Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Forward (+)

42094141 .. 42096638

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008893

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCAGCTTTTAGATCCCAGGTTCATGGATTCGAATTTCAGCCCAAGCCCTACGGAGGCACATCCTGATACGATGGATTTTCTGTCTCTTGCATGGTGCAATTTTGCAGTACAAGCTTTGCAACCAGTGCAACAAGACCACCAATCTCTAGTTTCGTTAGATGATCCAATTATCAAGTTTGAGAGCCAGAACATGACTCAAATCACGAAGTTGGACAAGAATGCAAAGATGGATGGCGCAGATGCCAAGCCTTTACCACCATGGAAATCTAATGATGTAAAGTCTTGGATATGGATGCAACAAGCCATGCATCCAGAATTGAACTACAGCAGCTATTTCCGAAAGAAATGGCTGTCATGGAAGATAGTGCCATTCAAGAACATGTCGATCAAGAAGTGGCTGAAGGAGATTAAAGAAAGGCGGAAAGAGGAACACAGGTTGCAAAGAGCTGAAGTCCATGCAGCTATATCTATGGCAGGTGTGGCAGCAGCGCTTGCTACCATTGCGGCTGAAAGCTCTGGAAAGAATGAGAGCACTGCCAAGGAAGCAGCTGTGGCTTCTGCAGCTGCTCTGGTGGCAGCCCAGTGTGCAAAAGTTGCAGAAGCAATGGGAGCAAAGAAGGAACAGATCAGCAGTGTAATAGGTTCAGCCATGAGTAGTACAAGTGCAAGTGATATCTTAACCCTCACAGCTGCAGCTGCAACATCATTAAAAGGAGCAGCCACACTTAAAGCAAGATCAGGATGCAAGATTATGCTACATGGGGGTGCACCCGTGCTGCCCATCGAGGAAAGCCATGAGGTTGACTTCGACTTTGAAAAGTGTAGGTCAATGCTTGGAATGGGTGTGCACCTCAGCATCGAAACACCAGATGGGAAGTACATGGTCAGATCAGTCTCCGTCATTCTAAGCAGTGAAGCCAAGGTTGTTCTTAAAATAAGGAAGCTCAGTCTGTTGAAAAGCAAGCAGGAAAGTATCATACTGGACATGCATGCAGAGCTGTATAAAGATTCAGAGGCAGAGACTGGTACAGGTTATCTTATCGTCTTGACAACGAGCAAAGGGACATTCAAACTTGACATGGAAGATGACTATCAACGTTACACAACATGGGCCACAACCATTAATCATATGCTGATGCTCTCTACTTCATTATCAAAATATCATCTTCAGTTCTACAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

396

Amino Acids

43.77

Weight (kDa)

8.44

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	21 - 264	4.8e-71	Auxin canalisation
PH_2	PF08458	285 - 382	5.4e-19	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	467
AciI	CCGC	2 cut(s)	421, 506
AclI	AACGTT	1 cut(s)	1099
AclWI	GGATC	2 cut(s)	8, 158
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	3 cut(s)	422, 471, 1154
AfaI	GTAC	4 cut(s)	111, 661, 881, 1030
AfeI	AGCGCT	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	5 cut(s)	322, 376, 818, 958, 1072
AjnI	CCWGG	1 cut(s)	17
Alw21I	GWGCWC	3 cut(s)	536, 772, 852
Alw26I	GTCTC	3 cut(s)	90, 901, 1016
Alw44I	GTGCAC	2 cut(s)	768, 848
AlwI	GGATC	2 cut(s)	8, 158
AlwNI	CAGNNNCTG	1 cut(s)	1025
Aor51HI	AGCGCT	1 cut(s)	492
AoxI	GGCC	1 cut(s)	1113
ApaLI	GTGCAC	2 cut(s)	768, 848
ApoI	RAATTY	1 cut(s)	34
ArsI	GACNNNNNNTTYG	2 cut(s)	797, 829
AseI	ATTAAT	1 cut(s)	1125
AspLEI	GCGC	2 cut(s)	239, 493
AspS9I	GGNCC	1 cut(s)	1113
AsuII	TTCGAA	1 cut(s)	32
BaeGI	GKGCMC	2 cut(s)	772, 852
Bbv12I	GWGCWC	3 cut(s)	536, 772, 852
BbvCI	CCTCAGC	1 cut(s)	854
BccI	CCATC	5 cut(s)	67, 223, 227, 791, 866
BciT130I	CCWGG	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	90, 901, 1016
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	3 cut(s)	325, 561, 693
BfoI	RGCGCY	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	467
Bme1390I	CCNGG	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	1113
BmrFI	CCNGG	1 cut(s)	19
BmrI	ACTGGG	1 cut(s)	577
BmsI	GCATC	6 cut(s)	232, 285, 319, 734, 867, 1128
BmuI	ACTGGG	1 cut(s)	577
Bpu10I	CCTNAGC	1 cut(s)	854
Bpu14I	TTCGAA	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	1092
BsaJI	CCNNGG	4 cut(s)	17, 260, 540, 921
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	4 cut(s)	125, 583, 987, 1030
Bse3DI	GCAATG	2 cut(s)	501, 612
Bse8I	GATNNNNATC	1 cut(s)	1092
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	4 cut(s)	17, 260, 540, 921
BseGI	GGATG	5 cut(s)	61, 238, 300, 310, 749
BseJI	GATNNNNATC	1 cut(s)	1092
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	2 cut(s)	501, 612
BseMII	CTCAG	2 cut(s)	868, 961
BseNI	ACTGG	4 cut(s)	125, 583, 987, 1030
BseSI	GKGCMC	2 cut(s)	772, 852
BshFI	GGCC	1 cut(s)	1115
BsiHKAI	GWGCWC	3 cut(s)	536, 772, 852
BslFI	GGGAC	1 cut(s)	1078
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	3 cut(s)	90, 901, 1016
BsmFI	GGGAC	1 cut(s)	1078
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	1115
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	3 cut(s)	536, 772, 852
Bsp143I	GATC	6 cut(s)	13, 163, 387, 627, 737, 890
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	2 cut(s)	421, 506
BspANI	GGCC	1 cut(s)	1115
BspCNI	CTCAG	2 cut(s)	867, 960
BspMAI	CTGCAG	2 cut(s)	565, 697
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	2 cut(s)	8, 158
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	501, 612
BsrI	ACTGG	4 cut(s)	125, 583, 987, 1030
BssECI	CCNNGG	4 cut(s)	17, 260, 540, 921
BssMI	GATC	6 cut(s)	13, 163, 387, 627, 737, 890
BssT1I	CCWWGG	3 cut(s)	260, 540, 921
Bst2UI	CCWGG	1 cut(s)	19
BstAPI	GCANNNNNTGC	3 cut(s)	127, 494, 596
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	495, 965, 993
BstDEI	CTNAG	3 cut(s)	854, 908, 947
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	5 cut(s)	61, 238, 300, 310, 749
BstH2I	RGCGCY	1 cut(s)	494
BstHHI	GCGC	2 cut(s)	239, 493
BstKTI	GATC	6 cut(s)	16, 166, 390, 630, 740, 893
BstMAI	GTCTC	3 cut(s)	90, 901, 1016
BstMBI	GATC	6 cut(s)	13, 163, 387, 627, 737, 890
BstNI	CCWGG	1 cut(s)	19
BstNSI	RCATGY	3 cut(s)	385, 991, 995
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	3 cut(s)	325, 561, 693
BstSLI	GKGCMC	2 cut(s)	772, 852
BstX2I	RGATCY	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	1115
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	5 cut(s)	61, 238, 300, 310, 749
BtsI	GCAGTG	3 cut(s)	534, 640, 919
BtsIMutI	CAGTG	5 cut(s)	132, 534, 590, 640, 919
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	3 cut(s)	495, 965, 993
CaiI	CAGNNNCTG	1 cut(s)	1025
CfoI	GCGC	2 cut(s)	239, 493
Cfr13I	GGNCC	1 cut(s)	1113
Csp6I	GTAC	4 cut(s)	110, 660, 880, 1029
CviQI	GTAC	4 cut(s)	110, 660, 880, 1029
DdeI	CTNAG	3 cut(s)	854, 908, 947
DpnI	GATC	6 cut(s)	15, 165, 389, 629, 739, 892
DpnII	GATC	6 cut(s)	13, 163, 387, 627, 737, 890
EciI	GGCGGA	1 cut(s)	436
Eco130I	CCWWGG	3 cut(s)	260, 540, 921
Eco32I	GATATC	1 cut(s)	676
Eco47III	AGCGCT	1 cut(s)	492
Eco57I	CTGAAG	3 cut(s)	422, 471, 1154
EcoRII	CCWGG	1 cut(s)	17
EcoRV	GATATC	1 cut(s)	676
EcoT14I	CCWWGG	3 cut(s)	260, 540, 921
EcoT22I	ATGCAT	2 cut(s)	312, 993
ErhI	CCWWGG	3 cut(s)	260, 540, 921
FaqI	GGGAC	1 cut(s)	1078
FauNDI	CATATG	1 cut(s)	1131
FokI	GGATG	5 cut(s)	48, 245, 297, 307, 756
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	2 cut(s)	238, 492
HaeII	RGCGCY	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	1115
HhaI	GCGC	2 cut(s)	239, 493
Hin6I	GCGC	2 cut(s)	237, 491
HinP1I	GCGC	2 cut(s)	237, 491
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	3 cut(s)	29, 196, 1010
Hpy166II	GTNNAC	3 cut(s)	770, 805, 850
Hpy188I	TCNGA	3 cut(s)	341, 890, 1015
Hpy188III	TCNNGA	8 cut(s)	65, 205, 314, 376, 391, 519, 741, 1048
Hpy8I	GTNNAC	3 cut(s)	770, 805, 850
HpyAV	CCTTC	2 cut(s)	397, 613
HpyCH4IV	ACGT	1 cut(s)	1099
HpyF3I	CTNAG	3 cut(s)	854, 908, 947
HpySE526I	ACGT	1 cut(s)	1099
HspAI	GCGC	2 cut(s)	237, 491
Kzo9I	GATC	6 cut(s)	13, 163, 387, 627, 737, 890
LmnI	GCTCC	2 cut(s)	611, 716
LweI	GCATC	6 cut(s)	232, 285, 319, 734, 867, 1128
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	1099
MaeIII	GTNAC	1 cut(s)	1100
MalI	GATC	6 cut(s)	15, 165, 389, 629, 739, 892
MboI	GATC	6 cut(s)	13, 163, 387, 627, 737, 890
MboII	GAAGA	3 cut(s)	373, 1097, 1160
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	3 cut(s)	536, 772, 852
MluCI	AATT	4 cut(s)	34, 100, 168, 317
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	7 cut(s)	49, 421, 695, 781, 793, 863, 1009
Mph1103I	ATGCAT	2 cut(s)	312, 993
MseI	TTAA	6 cut(s)	411, 680, 710, 729, 933, 1125
MslI	CAYNNNNRTG	1 cut(s)	765
MspA1I	CMGCKG	4 cut(s)	551, 566, 692, 698
MspR9I	CCNGG	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	1131
NdeII	GATC	6 cut(s)	13, 163, 387, 627, 737, 890
NsiI	ATGCAT	2 cut(s)	312, 993
NspI	RCATGY	3 cut(s)	385, 991, 995
NspV	TTCGAA	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	995
PaqCI	CACCTGC	1 cut(s)	467
PciI	ACATGT	1 cut(s)	381
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	29, 1010
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PscI	ACATGT	1 cut(s)	381
PshBI	ATTAAT	1 cut(s)	1125
Psp1406I	AACGTT	1 cut(s)	1099
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	1113
PstI	CTGCAG	2 cut(s)	565, 697
PstNI	CAGNNNCTG	1 cut(s)	1025
PsuI	RGATCY	1 cut(s)	13
PvuII	CAGCTG	4 cut(s)	551, 566, 692, 698
RsaI	GTAC	4 cut(s)	111, 661, 881, 1030
RsaNI	GTAC	4 cut(s)	110, 660, 880, 1029
RseI	CAYNNNNRTG	1 cut(s)	765
SaqAI	TTAA	6 cut(s)	411, 680, 710, 729, 933, 1125
Sau3AI	GATC	6 cut(s)	13, 163, 387, 627, 737, 890
Sau96I	GGNCC	1 cut(s)	1113
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	3 cut(s)	536, 772, 852
SfaNI	GCATC	6 cut(s)	232, 285, 319, 734, 867, 1128
SfcI	CTRYAG	3 cut(s)	325, 561, 693
SfuI	TTCGAA	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	765
SphI	GCATGC	1 cut(s)	995
Sse9I	AATT	4 cut(s)	34, 100, 168, 317
SsiI	CCGC	2 cut(s)	421, 506
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	3 cut(s)	260, 540, 921
TaiI	ACGT	1 cut(s)	1102
TaqI	TCGA	5 cut(s)	32, 386, 786, 810, 861
TasI	AATT	4 cut(s)	34, 100, 168, 317
TatI	WGTACW	3 cut(s)	109, 659, 879
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	2 cut(s)	29, 1010
Tru1I	TTAA	6 cut(s)	411, 680, 710, 729, 933, 1125
Tru9I	TTAA	6 cut(s)	411, 680, 710, 729, 933, 1125
TscAI	CASTG	5 cut(s)	132, 541, 590, 640, 919
TspDTI	ATGAA	2 cut(s)	13, 1140
TspGWI	ACGGA	2 cut(s)	68, 889
TspRI	CASTG	5 cut(s)	132, 541, 590, 640, 919
VneI	GTGCAC	2 cut(s)	768, 848
VspI	ATTAAT	1 cut(s)	1125
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	3 cut(s)	385, 991, 995
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	2 cut(s)	312, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.