Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Reverse (-)

23400864 .. 23403150

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAACTATCATTAGCATTAACATCAACAGACCATAATCCATCGCCTTCAGAGGCACATCCAGATACTATGGACTTTCTGTCTCGAGAATGGTGTAATTTCGCTGTTCAATCACTTCATCCAGACCCTATCCTCTACGATCGTTCCATTGTTCCCGTCGAGACATCGATCGCCAAGTTTCAAGGCGACTCAAGTCCTGTTTCTTGTGCTATGATGGATACGAGCATGAAGATGGACGATCCAGATTTTAAGCCCTCGATGCCTTCATGGAAAACCAATGATGTGAAGTCATGGATATGGATGCAACAAGCAATGCACCCGGAATTGAGCTACGAAGGCTTTTTCCGCAAGAAACTTAAACTTCCATGGAAAATTACGCCGTCGATAAAGAAATGGTGGAAAGAGATAAAGGCGAAACGAAAGGAAGAAGTGAGGCTACAGAGAGCTGAAGTCCACGCCGCCGTGTCATTGGCTGGTCTTGCCGCTGCTCTCGCCGCCGTGGCTTCAGAGAACGCTGGAAAAGATGGTGGAAACGGTCGACCTAGCACGAGGGAGACTGCTGTGGCTTCTGCTGCGGCTGTGGTGGCGGCACAATGTGCGCAAATGGCAGAGACAATGGGAGCAAACAGAGACCAGCTCAGCACGATGATTGGTTCAGCCATGACCGGGACAAGTGTTAGTGAGATACTCACTCTCACTGCCTCAGCTACAACTTCGTTGAGAGGTGCCGCGACGCTGAAAGCAAGAAGAGGTTGCAAGATTAATAGATTGAATGGCTCTGCACCTGTGTTGCCTATTGAAGACTCTTCTTATTTGCCTCCTGAATTCGATAAGAACACATCTGTTCTTGCTAAGGGAACAGATCTCTTCGTCGAGACACCAGATGGGGATTTCAAGGCTAGGACGGTTTCTATGGTCTTAAACAAAGATGGAAAGGTGATTCTTAAAATGAAGAAACATAATCTACTCAGGACTAAGAAAGAAAGTATTGTGACGAATGTTCATGTGGAACTTTACAAAGATTCAGATAGCGAAGACAACAACATAGAGGACACTTGTTATCTCATTGTCCTGAGGACGAACAGAGGAGCTATCAAGTTAGACATGGCCGACGATTACAATCGTTACAAGACATGGGTCACAACGATCCAACACATGCTCACTCTCTCTTCTTCCTCCTTAAGTACAAATTACGCTCTCACTTTCTACAACAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

406

Amino Acids

44.87

Weight (kDa)

8.41

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	20 - 268	2e-71	Auxin canalisation
PH_2	PF08458	288 - 329	3.4e-09	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	600
AccB1I	GGYRCC	1 cut(s)	725
AccI	GTMKAC	1 cut(s)	538
AccII	CGCG	1 cut(s)	731
AciI	CCGC	7 cut(s)	346, 459, 483, 495, 575, 587, 729
AclWI	GGATC	2 cut(s)	233, 1141
AcoI	YGGCCR	1 cut(s)	1107
AcsI	RAATTY	1 cut(s)	824
AcuI	CTGAAG	3 cut(s)	33, 468, 489
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	1 cut(s)	1186
AfiI	CCNNNNNNNGG	1 cut(s)	666
AflII	CTTAAG	1 cut(s)	1180
AgsI	TTSAA	5 cut(s)	110, 182, 772, 800, 895
AhdI	GACNNNNNGTC	1 cut(s)	79
AluBI	AGCT	5 cut(s)	330, 446, 637, 707, 1091
AluI	AGCT	5 cut(s)	330, 446, 637, 707, 1091
Alw26I	GTCTC	6 cut(s)	87, 155, 548, 605, 624, 869
AlwI	GGATC	2 cut(s)	233, 1141
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	1 cut(s)	1107
ApeKI	GCWGC	2 cut(s)	485, 572
ApoI	RAATTY	1 cut(s)	824
AseI	ATTAAT	1 cut(s)	762
AspLEI	GCGC	1 cut(s)	601
AsuC2I	CCSGG	2 cut(s)	320, 667
AsuHPI	GGTGA	1 cut(s)	949
AvaI	CYCGRG	1 cut(s)	84
AxyI	CCTNAGG	1 cut(s)	1073
BanI	GGYRCC	1 cut(s)	725
BarI	GAAGNNNNNNTAC	2 cut(s)	420, 452
BauI	CACGAG	1 cut(s)	547
BbsI	GAAGAC	2 cut(s)	807, 1041
BbvCI	CCTCAGC	1 cut(s)	703
BbvI	GCAGC	2 cut(s)	472, 559
BccI	CCATC	6 cut(s)	49, 208, 226, 518, 878, 923
BceAI	ACGGC	3 cut(s)	364, 446, 482
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	2 cut(s)	320, 667
BcoDI	GTCTC	6 cut(s)	87, 155, 548, 605, 624, 869
BfaI	CTAG	2 cut(s)	543, 900
BfmI	CTRYAG	1 cut(s)	437
BfrI	CTTAAG	1 cut(s)	1180
BfuI	GTATCC	1 cut(s)	211
BglI	GCCNNNNNGGC	1 cut(s)	500
BglII	AGATCT	1 cut(s)	862
BisI	GCNGC	8 cut(s)	459, 483, 486, 495, 573, 576, 588, 729
BlpI	GCTNAGC	1 cut(s)	638
BlsI	GCNGC	8 cut(s)	460, 484, 487, 496, 574, 577, 589, 730
Bme1390I	CCNGG	2 cut(s)	320, 667
BmeRI	GACNNNNNGTC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	727
BmrFI	CCNGG	2 cut(s)	320, 667
BmsI	GCATC	2 cut(s)	249, 291
BoxI	GACNNNNGTC	2 cut(s)	192, 1136
BpiI	GAAGAC	2 cut(s)	807, 1041
BplI	GAGNNNNNCTC	2 cut(s)	621, 653
Bpu10I	CCTNAGC	2 cut(s)	703, 852
Bpu1102I	GCTNAGC	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	175
BpuMI	CCSGG	2 cut(s)	320, 667
Bsa29I	ATCGAT	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	1119
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	365, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
Bse21I	CCTNAGG	1 cut(s)	1073
Bse3DI	GCAATG	1 cut(s)	318
Bse8I	GATNNNNATC	1 cut(s)	1119
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	365, 498
BseGI	GGATG	3 cut(s)	58, 118, 306
BseJI	GATNNNNATC	1 cut(s)	1119
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	4 cut(s)	652, 717, 982, 1064
BseRI	GAGGAG	1 cut(s)	1101
BseXI	GCAGC	2 cut(s)	472, 559
BsgI	GTGCAG	1 cut(s)	765
Bsh1236I	CGCG	1 cut(s)	731
Bsh1285I	CGRYCG	3 cut(s)	142, 171, 538
BshFI	GGCC	1 cut(s)	1109
BshNI	GGYRCC	1 cut(s)	725
BshVI	ATCGAT	1 cut(s)	167
BsiEI	CGRYCG	3 cut(s)	142, 171, 538
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	320, 666
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	1 cut(s)	666
BsmAI	GTCTC	6 cut(s)	87, 155, 548, 605, 624, 869
BsmFI	GGGAC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	1109
Bso31I	GGTCTC	1 cut(s)	624
BsoBI	CYCGRG	1 cut(s)	84
Bsp143I	GATC	5 cut(s)	139, 168, 238, 862, 1146
Bsp1720I	GCTNAGC	1 cut(s)	638
Bsp19I	CCATGG	1 cut(s)	365
BspACI	CCGC	7 cut(s)	346, 459, 483, 495, 575, 587, 729
BspANI	GGCC	1 cut(s)	1109
BspCNI	CTCAG	4 cut(s)	651, 716, 981, 1065
BspDI	ATCGAT	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	731
BspLI	GGNNCC	1 cut(s)	727
BspPI	GGATC	2 cut(s)	233, 1141
BspT107I	GGYRCC	1 cut(s)	725
BspTI	CTTAAG	1 cut(s)	1180
BspTNI	GGTCTC	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	365, 498
BssMI	GATC	5 cut(s)	139, 168, 238, 862, 1146
BssSI	CACGAG	1 cut(s)	547
BssT1I	CCWWGG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	547
Bst4CI	ACNGT	2 cut(s)	536, 907
Bst6I	CTCTTC	4 cut(s)	742, 811, 872, 1174
BstAFI	CTTAAG	1 cut(s)	1180
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstDEI	CTNAG	6 cut(s)	638, 703, 852, 968, 975, 1073
BstDSI	CCRYGG	2 cut(s)	365, 498
BstF5I	GGATG	3 cut(s)	58, 118, 306
BstFNI	CGCG	1 cut(s)	731
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	5 cut(s)	142, 171, 241, 865, 1149
BstMAI	GTCTC	6 cut(s)	87, 155, 548, 605, 624, 869
BstMBI	GATC	5 cut(s)	139, 168, 238, 862, 1146
BstMCI	CGRYCG	3 cut(s)	142, 171, 538
BstNSI	RCATGY	1 cut(s)	1159
BstPAI	GACNNNNGTC	2 cut(s)	192, 1136
BstSCI	CCNGG	2 cut(s)	318, 665
BstSFI	CTRYAG	1 cut(s)	437
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	2 cut(s)	472, 559
BstV2I	GAAGAC	2 cut(s)	807, 1041
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
Bsu15I	ATCGAT	1 cut(s)	167
Bsu36I	CCTNAGG	1 cut(s)	1073
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	1109
BsuTUI	ATCGAT	1 cut(s)	167
BtgI	CCRYGG	2 cut(s)	365, 498
BtgZI	GCGATG	1 cut(s)	27
BtsCI	GGATG	3 cut(s)	58, 118, 306
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	1 cut(s)	696
CfoI	GCGC	1 cut(s)	601
ClaI	ATCGAT	1 cut(s)	167
CseI	GACGC	1 cut(s)	742
Csp6I	GTAC	1 cut(s)	1185
CviAII	CATG	9 cut(s)	226, 267, 291, 366, 661, 1004, 1105, 1134, 1156
CviQI	GTAC	1 cut(s)	1185
DdeI	CTNAG	6 cut(s)	638, 703, 852, 968, 975, 1073
DpnI	GATC	5 cut(s)	141, 170, 240, 864, 1148
DpnII	GATC	5 cut(s)	139, 168, 238, 862, 1146
DraIII	CACNNNGTG	1 cut(s)	596
DriI	GACNNNNNGTC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	1107
Eam1104I	CTCTTC	4 cut(s)	742, 811, 872, 1174
Eam1105I	GACNNNNNGTC	1 cut(s)	79
EarI	CTCTTC	4 cut(s)	742, 811, 872, 1174
Eco130I	CCWWGG	1 cut(s)	365
Eco31I	GGTCTC	1 cut(s)	624
Eco57I	CTGAAG	3 cut(s)	33, 468, 489
Eco81I	CCTNAGG	1 cut(s)	1073
Eco88I	CYCGRG	1 cut(s)	84
EcoRI	GAATTC	1 cut(s)	824
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	9 cut(s)	229, 270, 294, 369, 664, 1007, 1108, 1137, 1159
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	9 cut(s)	225, 266, 290, 365, 660, 1003, 1104, 1133, 1155
FblI	GTMKAC	1 cut(s)	538
Fnu4HI	GCNGC	8 cut(s)	459, 483, 486, 495, 573, 576, 588, 729
FokI	GGATG	3 cut(s)	45, 105, 313
Fsp4HI	GCNGC	8 cut(s)	459, 483, 486, 495, 573, 576, 588, 729
FspBI	CTAG	2 cut(s)	543, 900
FspI	TGCGCA	1 cut(s)	600
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	8 cut(s)	459, 483, 486, 495, 573, 576, 588, 729
HaeIII	GGCC	1 cut(s)	1109
HapII	CCGG	2 cut(s)	320, 666
HgaI	GACGC	1 cut(s)	742
HhaI	GCGC	1 cut(s)	601
Hin1II	CATG	9 cut(s)	229, 270, 294, 369, 664, 1007, 1108, 1137, 1159
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HincII	GTYRAC	1 cut(s)	539
HindII	GTYRAC	1 cut(s)	539
HinfI	GANTC	4 cut(s)	188, 803, 940, 1022
HpaII	CCGG	2 cut(s)	320, 666
HphI	GGTGA	1 cut(s)	949
Hpy166II	GTNNAC	2 cut(s)	454, 539
Hpy188I	TCNGA	3 cut(s)	52, 508, 1027
Hpy8I	GTNNAC	2 cut(s)	454, 539
Hpy99I	CGWCG	5 cut(s)	161, 385, 736, 875, 1115
HpyAV	CCTTC	3 cut(s)	57, 273, 329
HpyCH4III	ACNGT	2 cut(s)	536, 907
HpyCH4V	TGCA	4 cut(s)	304, 316, 756, 782
HpyF3I	CTNAG	6 cut(s)	638, 703, 852, 968, 975, 1073
Hsp92II	CATG	9 cut(s)	229, 270, 294, 369, 664, 1007, 1108, 1137, 1159
HspAI	GCGC	1 cut(s)	599
Kzo9I	GATC	5 cut(s)	139, 168, 238, 862, 1146
LmnI	GCTCC	2 cut(s)	620, 1088
Lsp1109I	GCAGC	2 cut(s)	472, 559
LweI	GCATC	2 cut(s)	249, 291
MaeI	CTAG	2 cut(s)	543, 900
MaeIII	GTNAC	3 cut(s)	991, 1124, 1138
MalI	GATC	5 cut(s)	141, 170, 240, 864, 1148
MboI	GATC	5 cut(s)	139, 168, 238, 862, 1146
MflI	RGATCY	1 cut(s)	862
MluCI	AATT	5 cut(s)	97, 323, 372, 824, 1189
MlyI	GAGTC	2 cut(s)	182, 797
MmeI	TCCRAC	1 cut(s)	1174
MseI	TTAA	7 cut(s)	20, 249, 357, 762, 920, 945, 1181
MslI	CAYNNNNRTG	2 cut(s)	230, 295
MspA1I	CMGCKG	1 cut(s)	485
MspCI	CTTAAG	1 cut(s)	1180
MspI	CCGG	2 cut(s)	320, 666
MspR9I	CCNGG	2 cut(s)	320, 667
MvnI	CGCG	1 cut(s)	731
NciI	CCSGG	2 cut(s)	320, 667
NcoI	CCATGG	1 cut(s)	365
NdeII	GATC	5 cut(s)	139, 168, 238, 862, 1146
NlaIII	CATG	9 cut(s)	229, 270, 294, 369, 664, 1007, 1108, 1137, 1159
NlaIV	GGNNCC	1 cut(s)	727
NmuCI	GTSAC	2 cut(s)	991, 1138
NsbI	TGCGCA	1 cut(s)	600
NspI	RCATGY	1 cut(s)	1159
PaeR7I	CTCGAG	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	940, 1022
PkrI	GCNGC	8 cut(s)	460, 484, 487, 496, 574, 577, 589, 730
Ple19I	CGATCG	2 cut(s)	142, 171
PleI	GAGTC	2 cut(s)	182, 797
PpsI	GAGTC	2 cut(s)	182, 797
PshAI	GACNNNNGTC	2 cut(s)	192, 1136
PshBI	ATTAAT	1 cut(s)	762
PspN4I	GGNNCC	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	862
PvuI	CGATCG	2 cut(s)	142, 171
RsaI	GTAC	1 cut(s)	1186
RsaNI	GTAC	1 cut(s)	1185
RseI	CAYNNNNRTG	2 cut(s)	230, 295
SalI	GTCGAC	1 cut(s)	537
SaqAI	TTAA	7 cut(s)	20, 249, 357, 762, 920, 945, 1181
SatI	GCNGC	8 cut(s)	459, 483, 486, 495, 573, 576, 588, 729
Sau3AI	GATC	5 cut(s)	139, 168, 238, 862, 1146
SchI	GAGTC	2 cut(s)	182, 797
ScrFI	CCNGG	2 cut(s)	320, 667
SfaNI	GCATC	2 cut(s)	249, 291
SfcI	CTRYAG	1 cut(s)	437
Sfr274I	CTCGAG	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	230, 295
SmlI	CTYRAG	3 cut(s)	84, 190, 1180
SmoI	CTYRAG	3 cut(s)	84, 190, 1180
Sse9I	AATT	5 cut(s)	97, 323, 372, 824, 1189
SsiI	CCGC	7 cut(s)	346, 459, 483, 495, 575, 587, 729
SspMI	CTAG	2 cut(s)	543, 900
StyD4I	CCNGG	2 cut(s)	318, 665
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	536, 907
TaqI	TCGA	8 cut(s)	85, 159, 167, 257, 383, 538, 828, 873
TasI	AATT	5 cut(s)	97, 323, 372, 824, 1189
TatI	WGTACW	1 cut(s)	1184
TauI	GCSGC	6 cut(s)	461, 485, 497, 578, 590, 731
TfiI	GAWTC	2 cut(s)	940, 1022
Tru1I	TTAA	7 cut(s)	20, 249, 357, 762, 920, 945, 1181
Tru9I	TTAA	7 cut(s)	20, 249, 357, 762, 920, 945, 1181
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	2 cut(s)	991, 1138
TseI	GCWGC	2 cut(s)	485, 572
Tsp45I	GTSAC	2 cut(s)	991, 1138
TspDTI	ATGAA	5 cut(s)	107, 242, 255, 965, 992
TspRI	CASTG	1 cut(s)	703
Vha464I	CTTAAG	1 cut(s)	1180
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	1 cut(s)	824
XceI	RCATGY	1 cut(s)	1159
XhoI	CTCGAG	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	538
XspI	CTAG	2 cut(s)	543, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.