pycom12494g00080

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012494
OG0006859
Physical Location & Seq
Reverse (-)
236729 .. 237618
890 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12494g00080.4

Sequence Viewer

Length: 417 bp
ATGCCTATCGAGGATAACCCTGAGGAGGTTGATTTCGACTTTGAGAAGTACAGATCAATGCTTGCAACAGGTGCCCAGCTCACCACTGAAACACCAGACGGGAAGTACACAGTTAGATCGGTGTCTGTCATCCTCAACAATGAAGCCAAGGTTCTTGTTCAAATGAGGAAGCTCGGTCTGTTGAAAAGCAAGAAGGAATGTATCATACTGGACATGCATGCGGAGCTGTATAAAGATTCAGAAGCCGGTGAGAATGGTACAGGTTATCTCATCGTGTTAACGACGAGTAAGGGGATGTTCAAGCTGGACATGGAAGCCGACTATCAGCGGTACAAGGCATGGGCGACGACCATTAACCATATGCTCTTGGTCTCTACTTCGTTTACGAAATATCATCTTCAATACTACAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

139

Amino Acids

15.86

Weight (kDa)

5.92

Isoelectric Point (pI)

28.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AciI CCGC 2 cut(s) 221, 328
AfaI GTAC 4 cut(s) 50, 107, 259, 332
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 4 cut(s) 161, 184, 301, 401
AluBI AGCT 4 cut(s) 79, 172, 226, 304
AluI AGCT 4 cut(s) 79, 172, 226, 304
Alw26I GTCTC 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 73, 260
AxyI CCTNAGG 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 129, 300
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 76
BseYI CCCAGC 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 376
Bso31I GGTCTC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 2 cut(s) 53, 116
BspACI CCGC 2 cut(s) 221, 328
BspCNI CTCAG 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 2 cut(s) 53, 116
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 63, 219
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 2 cut(s) 129, 300
BstKTI GATC 2 cut(s) 56, 119
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 2 cut(s) 53, 116
BstMWI GCNNNNNNNGC 2 cut(s) 71, 223
BstNSI RCATGY 2 cut(s) 217, 221
BstSLI GKGCMC 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 129, 300
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 63, 219
Cfr10I RCCGGY 1 cut(s) 245
Csp6I GTAC 4 cut(s) 49, 106, 258, 331
CviAII CATG 4 cut(s) 214, 218, 310, 339
CviJI RGCY 7 cut(s) 79, 146, 172, 226, 245, 304, 317
CviKI_1 RGCY 7 cut(s) 79, 146, 172, 226, 245, 304, 317
CviQI GTAC 4 cut(s) 49, 106, 258, 331
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 55, 118
DpnII GATC 2 cut(s) 53, 116
Eco130I CCWWGG 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 376
Eco81I CCTNAGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 4 cut(s) 217, 221, 313, 342
FaiI YATR 8 cut(s) 206, 215, 219, 231, 311, 340, 360, 362
FatI CATG 4 cut(s) 213, 217, 309, 338
FauNDI CATATG 1 cut(s) 360
FokI GGATG 2 cut(s) 116, 307
FspBI CTAG 1 cut(s) 415
GsaI CCCAGC 1 cut(s) 79
HapII CCGG 1 cut(s) 246
Hin1II CATG 4 cut(s) 217, 221, 313, 342
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HinfI GANTC 1 cut(s) 236
HpaI GTTAAC 1 cut(s) 279
HpaII CCGG 1 cut(s) 246
HphI GGTGA 2 cut(s) 73, 260
Hpy166II GTNNAC 3 cut(s) 108, 279, 384
Hpy188I TCNGA 1 cut(s) 241
Hpy8I GTNNAC 3 cut(s) 108, 279, 384
Hpy99I CGWCG 2 cut(s) 286, 349
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 65, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 223
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 4 cut(s) 217, 221, 313, 342
KspAI GTTAAC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 53, 116
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 8 cut(s) 33, 54, 89, 108, 194, 246, 259, 290
MaeI CTAG 1 cut(s) 415
MalI GATC 2 cut(s) 55, 118
MboI GATC 2 cut(s) 53, 116
MboII GAAGA 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 76
MnlI CCTC 5 cut(s) 4, 16, 19, 143, 159
Mph1103I ATGCAT 1 cut(s) 219
MseI TTAA 2 cut(s) 278, 354
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 71, 223
NdeI CATATG 1 cut(s) 360
NdeII GATC 2 cut(s) 53, 116
NlaIII CATG 4 cut(s) 217, 221, 313, 342
NlaIV GGNNCC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 219
NspI RCATGY 2 cut(s) 217, 221
PaeI GCATGC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 73
RsaI GTAC 4 cut(s) 50, 107, 259, 332
RsaNI GTAC 4 cut(s) 49, 106, 258, 331
SaqAI TTAA 2 cut(s) 278, 354
Sau3AI GATC 2 cut(s) 53, 116
SduI GDGCHC 1 cut(s) 76
SetI ASST 8 cut(s) 30, 73, 81, 153, 174, 228, 265, 306
SphI GCATGC 1 cut(s) 221
SsiI CCGC 2 cut(s) 221, 328
SspMI CTAG 1 cut(s) 415
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 9, 36
TaqII GACCGA 1 cut(s) 164
TatI WGTACW 2 cut(s) 48, 105
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 278, 354
Tru9I TTAA 2 cut(s) 278, 354
TscAI CASTG 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 1 cut(s) 91
XceI RCATGY 2 cut(s) 217, 221
XspI CTAG 1 cut(s) 415
Zsp2I ATGCAT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.