Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Reverse (-)

21710269 .. 21714069

Gene Structure 3801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAATATAATGATGCAGCTTTTAGATCCCAGGTTCATGGATTCGAATTTCAGCCCAAGCCCTACGGAGGCACATCCTGATACGACGGATTTTCTTTCTCTTGCATGGTGCAATTTTGCAGTACAAGCTTTGCAACCAGTGCAACAAGACCACCAATCTCTAGTTTCGTTAGATGATCCAATTATCAAGTTTGAGAGCCAAAACATGACTCAAATCACGAAGCTGGACAAGAATGCAAAGATGGATGGTGCAGATGCCAAGCCTTTACCACCATGGAAATCTAATGATGTAAAGTCATGGATATGGATGCAACAAGCCATGCATCCAGAATTGAACTACAACAGCTATTTCCGAAAGAAATGGCAGCTGTCATGGAAGATAGTGCCATTCAAGAACATGTCGATCAAGAAGTGGCTGAAGGAGATTAAAGAAAGGCGGAAAGAGGAACATAGGTTGCAAAGAGCTGAAGTCCATGCAGCCATATCAATGGCAGGTGTGGCAGCAGCGCTTGCGACCATTGCGGCTGAAAGCTCTGGAAAGAATGAGAGCACTGCCAAGGAAGCAGCTGTGGCTTCTGCAGCTGCTCTGGTGGCAGCCCAGTGTGCAAAAGTTGCAGAAGCAATGGGAGCAAAGAAGGAACAGATCAGCAGTGTAATAGGTTCAGCCATGAGTAGTACAAGTGCAAGTGATATCTTAACCCTCACAGCTGCAGCTGCAACATCATTAAAAGGAGCAGCTACACTTAAAGCAAGATCAGGATGCAAGAATATGCTACATGGGGGTGCACCCGTGCTGCCCATCGAGGAGAGCCATGAGGTTGACTTCGACTTTGAAAAGTGTAGGTCAATGCTCGGAATGGGTGCGCACCTCAGCATCGAAACACCAGATGGGAAGTACATGGTCAGATCAGTGTCCGTCATCCTAAACAGTGAAGCCAAGGTTGTTCTTAAAATAAGGAAGCTCAGTCTGTTGAAAAGCAAGCAGGAAAGTATCATACTGGACATGCATGCAGAGCTGTATAAAGATTCAGAAGCAGAGACTGGTACAGGTTATCTTATCGTCTTGACAACGAGTAAGGGAACATTCAAACTTGACATGGAAGATGACTATCAACGTTACACAACATGGGCCACAACCATTAATCATATGCTGATGCTCTCTACTTCATTATCAAAATATCATCTTCAGTTCTACAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

400

Amino Acids

44.39

Weight (kDa)

8.44

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	26 - 269	4.9e-70	Auxin canalisation
PH_2	PF08458	290 - 387	8.2e-20	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc16I	TGCGCA	1 cut(s)	864
Acc36I	ACCTGC	1 cut(s)	482
AciI	CCGC	2 cut(s)	436, 521
AclI	AACGTT	1 cut(s)	1114
AclWI	GGATC	2 cut(s)	20, 170
AcsI	RAATTY	1 cut(s)	46
AcuI	CTGAAG	3 cut(s)	437, 486, 1169
AfaI	GTAC	4 cut(s)	123, 676, 896, 1045
AfeI	AGCGCT	1 cut(s)	507
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	5 cut(s)	334, 391, 833, 973, 1087
AjnI	CCWGG	1 cut(s)	29
Alw21I	GWGCWC	2 cut(s)	551, 787
Alw26I	GTCTC	1 cut(s)	1031
Alw44I	GTGCAC	1 cut(s)	783
AlwI	GGATC	2 cut(s)	20, 170
AlwNI	CAGNNNCTG	1 cut(s)	1040
Aor51HI	AGCGCT	1 cut(s)	507
AoxI	GGCC	1 cut(s)	1128
ApaLI	GTGCAC	1 cut(s)	783
ApoI	RAATTY	1 cut(s)	46
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
AseI	ATTAAT	1 cut(s)	1140
AspLEI	GCGC	2 cut(s)	508, 865
AspS9I	GGNCC	1 cut(s)	1128
AsuII	TTCGAA	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	787
Bbv12I	GWGCWC	2 cut(s)	551, 787
BbvCI	CCTCAGC	1 cut(s)	869
BccI	CCATC	4 cut(s)	235, 239, 806, 881
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	1031
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	2 cut(s)	576, 708
BfoI	RGCGCY	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	482
Bme1390I	CCNGG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	1128
BmrFI	CCNGG	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	592
BmsI	GCATC	7 cut(s)	3, 244, 297, 331, 749, 882, 1143
BmuI	ACTGGG	1 cut(s)	592
Bpu10I	CCTNAGC	1 cut(s)	869
Bpu14I	TTCGAA	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	1107
BsaJI	CCNNGG	4 cut(s)	29, 272, 555, 936
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	4 cut(s)	137, 598, 1002, 1045
Bse3DI	GCAATG	2 cut(s)	516, 627
Bse8I	GATNNNNATC	1 cut(s)	1107
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	4 cut(s)	29, 272, 555, 936
BseGI	GGATG	6 cut(s)	73, 250, 312, 322, 764, 918
BseJI	GATNNNNATC	1 cut(s)	1107
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	516, 627
BseMII	CTCAG	2 cut(s)	883, 976
BseNI	ACTGG	4 cut(s)	137, 598, 1002, 1045
BseRI	GAGGAG	1 cut(s)	818
BseSI	GKGCMC	1 cut(s)	787
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	1130
BsiHKAI	GWGCWC	2 cut(s)	551, 787
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	1031
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	1130
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	551, 787
Bsp143I	GATC	6 cut(s)	25, 175, 402, 642, 752, 905
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	2 cut(s)	436, 521
BspANI	GGCC	1 cut(s)	1130
BspCNI	CTCAG	2 cut(s)	882, 975
BspMAI	CTGCAG	2 cut(s)	580, 712
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	2 cut(s)	20, 170
BspT104I	TTCGAA	1 cut(s)	44
BsrDI	GCAATG	2 cut(s)	516, 627
BsrI	ACTGG	4 cut(s)	137, 598, 1002, 1045
BssECI	CCNNGG	4 cut(s)	29, 272, 555, 936
BssMI	GATC	6 cut(s)	25, 175, 402, 642, 752, 905
BssT1I	CCWWGG	3 cut(s)	272, 555, 936
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	929
BstAPI	GCANNNNNTGC	3 cut(s)	139, 509, 611
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	510, 980, 1008
BstDEI	CTNAG	2 cut(s)	869, 962
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	6 cut(s)	73, 250, 312, 322, 764, 918
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	2 cut(s)	508, 865
BstKTI	GATC	6 cut(s)	28, 178, 405, 645, 755, 908
BstMAI	GTCTC	1 cut(s)	1031
BstMBI	GATC	6 cut(s)	25, 175, 402, 642, 752, 905
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	3 cut(s)	400, 1006, 1010
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	2 cut(s)	576, 708
BstSLI	GKGCMC	1 cut(s)	787
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	2 cut(s)	37, 487
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	1130
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	6 cut(s)	73, 250, 312, 322, 764, 918
BtsI	GCAGTG	2 cut(s)	549, 655
BtsIMutI	CAGTG	6 cut(s)	144, 549, 605, 655, 915, 934
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	3 cut(s)	510, 980, 1008
CaiI	CAGNNNCTG	1 cut(s)	1040
CfoI	GCGC	2 cut(s)	508, 865
Cfr13I	GGNCC	1 cut(s)	1128
Csp6I	GTAC	4 cut(s)	122, 675, 895, 1044
CviQI	GTAC	4 cut(s)	122, 675, 895, 1044
DdeI	CTNAG	2 cut(s)	869, 962
DpnI	GATC	6 cut(s)	27, 177, 404, 644, 754, 907
DpnII	GATC	6 cut(s)	25, 175, 402, 642, 752, 905
EciI	GGCGGA	1 cut(s)	451
Eco130I	CCWWGG	3 cut(s)	272, 555, 936
Eco32I	GATATC	1 cut(s)	691
Eco47III	AGCGCT	1 cut(s)	507
Eco57I	CTGAAG	3 cut(s)	437, 486, 1169
EcoRII	CCWGG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	3 cut(s)	272, 555, 936
EcoT22I	ATGCAT	2 cut(s)	324, 1008
ErhI	CCWWGG	3 cut(s)	272, 555, 936
FauNDI	CATATG	1 cut(s)	1146
FokI	GGATG	6 cut(s)	60, 257, 309, 319, 771, 905
FspAI	RTGCGCAY	1 cut(s)	864
FspBI	CTAG	1 cut(s)	161
FspI	TGCGCA	1 cut(s)	864
GlaI	GCGC	2 cut(s)	507, 864
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	1130
HhaI	GCGC	2 cut(s)	508, 865
Hin6I	GCGC	2 cut(s)	506, 863
HinP1I	GCGC	2 cut(s)	506, 863
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	3 cut(s)	41, 208, 1025
Hpy166II	GTNNAC	2 cut(s)	785, 820
Hpy188I	TCNGA	4 cut(s)	353, 854, 905, 1030
Hpy188III	TCNNGA	8 cut(s)	77, 217, 326, 391, 406, 534, 756, 1063
Hpy8I	GTNNAC	2 cut(s)	785, 820
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	412, 628
HpyCH4III	ACNGT	1 cut(s)	929
HpyCH4IV	ACGT	1 cut(s)	1114
HpyF3I	CTNAG	2 cut(s)	869, 962
HpySE526I	ACGT	1 cut(s)	1114
HspAI	GCGC	2 cut(s)	506, 863
Kzo9I	GATC	6 cut(s)	25, 175, 402, 642, 752, 905
LmnI	GCTCC	2 cut(s)	626, 731
LweI	GCATC	7 cut(s)	3, 244, 297, 331, 749, 882, 1143
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	1114
MaeIII	GTNAC	1 cut(s)	1115
MalI	GATC	6 cut(s)	27, 177, 404, 644, 754, 907
MboI	GATC	6 cut(s)	25, 175, 402, 642, 752, 905
MboII	GAAGA	3 cut(s)	388, 1112, 1175
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	551, 787
MluCI	AATT	4 cut(s)	46, 112, 180, 329
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	6 cut(s)	61, 436, 710, 796, 808, 878
Mph1103I	ATGCAT	2 cut(s)	324, 1008
MseI	TTAA	6 cut(s)	426, 695, 725, 744, 948, 1140
MslI	CAYNNNNRTG	3 cut(s)	301, 485, 780
MspA1I	CMGCKG	5 cut(s)	367, 566, 581, 707, 713
MspR9I	CCNGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	272
NdeI	CATATG	1 cut(s)	1146
NdeII	GATC	6 cut(s)	25, 175, 402, 642, 752, 905
NsbI	TGCGCA	1 cut(s)	864
NsiI	ATGCAT	2 cut(s)	324, 1008
NspI	RCATGY	3 cut(s)	400, 1006, 1010
NspV	TTCGAA	1 cut(s)	44
PaeI	GCATGC	1 cut(s)	1010
PaqCI	CACCTGC	1 cut(s)	482
PciI	ACATGT	1 cut(s)	396
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	41, 1025
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PscI	ACATGT	1 cut(s)	396
PshBI	ATTAAT	1 cut(s)	1140
Psp1406I	AACGTT	1 cut(s)	1114
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	1128
PstI	CTGCAG	2 cut(s)	580, 712
PstNI	CAGNNNCTG	1 cut(s)	1040
PsuI	RGATCY	1 cut(s)	25
PvuII	CAGCTG	5 cut(s)	367, 566, 581, 707, 713
RsaI	GTAC	4 cut(s)	123, 676, 896, 1045
RsaNI	GTAC	4 cut(s)	122, 675, 895, 1044
RseI	CAYNNNNRTG	3 cut(s)	301, 485, 780
SaqAI	TTAA	6 cut(s)	426, 695, 725, 744, 948, 1140
Sau3AI	GATC	6 cut(s)	25, 175, 402, 642, 752, 905
Sau96I	GGNCC	1 cut(s)	1128
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	551, 787
SfaNI	GCATC	7 cut(s)	3, 244, 297, 331, 749, 882, 1143
SfcI	CTRYAG	2 cut(s)	576, 708
SfuI	TTCGAA	1 cut(s)	44
SmiMI	CAYNNNNRTG	3 cut(s)	301, 485, 780
SphI	GCATGC	1 cut(s)	1010
Sse9I	AATT	4 cut(s)	46, 112, 180, 329
SsiI	CCGC	2 cut(s)	436, 521
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	3 cut(s)	272, 555, 936
TaaI	ACNGT	1 cut(s)	929
TaiI	ACGT	1 cut(s)	1117
TaqI	TCGA	5 cut(s)	44, 401, 801, 825, 876
TasI	AATT	4 cut(s)	46, 112, 180, 329
TatI	WGTACW	3 cut(s)	121, 674, 894
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	2 cut(s)	41, 1025
Tru1I	TTAA	6 cut(s)	426, 695, 725, 744, 948, 1140
Tru9I	TTAA	6 cut(s)	426, 695, 725, 744, 948, 1140
TscAI	CASTG	6 cut(s)	144, 556, 605, 655, 915, 934
TspDTI	ATGAA	3 cut(s)	17, 25, 1155
TspGWI	ACGGA	3 cut(s)	80, 101, 904
TspRI	CASTG	6 cut(s)	144, 556, 605, 655, 915, 934
VneI	GTGCAC	1 cut(s)	783
VspI	ATTAAT	1 cut(s)	1140
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	3 cut(s)	400, 1006, 1010
XspI	CTAG	1 cut(s)	161
Zsp2I	ATGCAT	2 cut(s)	324, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.