Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8375197.1

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 867

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8375197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 418 bp

atgctacatgggggtgcacccgtgctgcccatcgaggagagccatgaggttgacttcgactttgaaaagtgtaggtcaatgctcggaatgggtgcgaacctcagcatcgaaacaccagatgggaagtacatggtcagatcagtgtccgtcatcctaagcagtgaagccaaggttgttcttaaaataaggaagctcagtctgttgaaaagcaagcaggaaagtatcatactggacatgcatgcagagctgtataaagattcagaggcagagactggtacaggttatcttatcgtcttgacaacaagtaaggggacattcaaacttgacatggaagatgactatcaacgttacacaacatgggccacaaccattaatcatatgctgatgctctctacttcattatcaaaatatcatcttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

139

Amino Acids

15.65

Weight (kDa)

5.7

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	346
AfaI	GTAC	2 cut(s)	128, 277
AgsI	TTSAA	3 cut(s)	65, 205, 319
AluBI	AGCT	2 cut(s)	193, 247
AluI	AGCT	2 cut(s)	193, 247
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	263
Alw44I	GTGCAC	1 cut(s)	15
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	360
ApaLI	GTGCAC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AseI	ATTAAT	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	2 cut(s)	38, 113
BcoDI	GTCTC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	360
BmsI	GCATC	2 cut(s)	114, 375
Bpu10I	CCTNAGC	2 cut(s)	101, 155
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	234, 277
Bse8I	GATNNNNATC	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	115, 208
BseNI	ACTGG	2 cut(s)	234, 277
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	12
BshFI	GGCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	2 cut(s)	114, 207
BsrI	ACTGG	2 cut(s)	234, 277
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	212, 240
BstDEI	CTNAG	3 cut(s)	101, 155, 194
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	140
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNSI	RCATGY	2 cut(s)	238, 242
BstSLI	GKGCMC	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	147, 166
Cac8I	GCNNGC	2 cut(s)	212, 240
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	127, 276
CviAII	CATG	7 cut(s)	8, 44, 130, 235, 239, 328, 357
CviJI	RGCY	5 cut(s)	42, 167, 193, 247, 362
CviKI_1	RGCY	5 cut(s)	42, 167, 193, 247, 362
CviQI	GTAC	2 cut(s)	127, 276
DdeI	CTNAG	3 cut(s)	101, 155, 194
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	7 cut(s)	11, 47, 133, 238, 242, 331, 360
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	7 cut(s)	7, 43, 129, 234, 238, 327, 356
FauNDI	CATATG	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	362
Hin1II	CATG	7 cut(s)	11, 47, 133, 238, 242, 331, 360
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	17, 52
Hpy188I	TCNGA	3 cut(s)	86, 137, 262
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	2 cut(s)	17, 52
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	3 cut(s)	17, 238, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	3 cut(s)	101, 155, 194
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	7 cut(s)	11, 47, 133, 238, 242, 331, 360
Kzo9I	GATC	1 cut(s)	137
LpnPI	CCDG	5 cut(s)	129, 200, 215, 258, 264
Lsp1109I	GCAGC	1 cut(s)	12
LweI	GCATC	2 cut(s)	114, 375
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	2 cut(s)	344, 407
MhlI	GDGCHC	1 cut(s)	19
MnlI	CCTC	4 cut(s)	28, 40, 110, 256
Mph1103I	ATGCAT	1 cut(s)	240
MseI	TTAA	2 cut(s)	180, 372
MslI	CAYNNNNRTG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeI	CATATG	1 cut(s)	378
NdeII	GATC	1 cut(s)	137
NlaIII	CATG	7 cut(s)	11, 47, 133, 238, 242, 331, 360
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	2 cut(s)	238, 242
PaeI	GCATGC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	372
Psp1406I	AACGTT	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	128, 277
RsaNI	GTAC	2 cut(s)	127, 276
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	180, 372
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	8 cut(s)	51, 77, 102, 174, 195, 249, 283, 349
SfaNI	GCATC	2 cut(s)	114, 375
SmiMI	CAYNNNNRTG	1 cut(s)	12
SphI	GCATGC	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	3 cut(s)	33, 57, 108
TatI	WGTACW	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	180, 372
Tru9I	TTAA	2 cut(s)	180, 372
TscAI	CASTG	2 cut(s)	147, 166
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	2 cut(s)	147, 166
VneI	GTGCAC	1 cut(s)	15
VspI	ATTAAT	1 cut(s)	372
XceI	RCATGY	2 cut(s)	238, 242
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.