Rorug04G0050100

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006859
Physical Location & Seq
Reverse (-)
7752004 .. 7753720
1717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0050100.1

Sequence Viewer

Length: 576 bp
ATGGAGACTTTTTCCGGGAAAAAGAGACCCTCAATCAGTCTTTCTCTATTCACTTCTTTCTCCGAGTCAATTTCCAGTGACAAGTCTTCCAATTCTATCAAATCCCCCAGAAATTTCCAGGATGGTGTGGTTGGGCTTGGCATAGTGGCTGCTATGACTGATTTGAGCAGCCCCAAAGAAATACCCATGTCTGCAAAGTCACCCAAATCGAGCCCAATTCCCATAGTCTCTGCAGCTAAGCCTGCTGCTAATTTCAGAGGTGGGCTTGTTGTGGAGAAACAGCTCCAAGGGGTTGTGGTGGATGAATTGTCTGAGAGCTATACTTGTGTGATTTCCCATTTTGGGAACAATTTGACAAAGAAACGTGTTTACTTTGATGATAAGCTCAGTGGAGTTTTTAATGATTGTAGTGATTGTGAGGTGAGAAGTGGGGTGTTCTCTGCTTCACCATTGAGTGTTGGTGAAGTGGGGAGAGAGTTTTGGTCTTCGGATTTTCTCAGTTCTTGTTATCTTTGCAAGAAGCAGCTTCAAGGACTGGACATTTTCATGTACAGGTATAGAGAATATCATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

191

Amino Acids

20.94

Weight (kDa)

8.23

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 161 - 187 2.7e-08 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 1 cut(s) 342
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 1 cut(s) 530
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 5 cut(s) 236, 283, 318, 385, 526
AluI AGCT 5 cut(s) 236, 283, 318, 385, 526
Alw26I GTCTC 2 cut(s) 19, 232
ApeKI GCWGC 5 cut(s) 149, 168, 233, 245, 523
ApoI RAATTY 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 4 cut(s) 192, 433, 438, 473
BanII GRGCYC 1 cut(s) 215
BbsI GAAGAC 2 cut(s) 78, 477
BbvI GCAGC 5 cut(s) 136, 180, 232, 245, 535
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 19, 232
BfmI CTRYAG 1 cut(s) 231
BisI GCNGC 5 cut(s) 150, 169, 234, 246, 524
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 5 cut(s) 151, 170, 235, 247, 525
Bme1390I CCNGG 2 cut(s) 16, 119
BmrFI CCNGG 2 cut(s) 16, 119
BpiI GAAGAC 2 cut(s) 78, 477
Bpu1102I GCTNAGC 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 2 cut(s) 75, 540
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 2 cut(s) 127, 307
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 3 cut(s) 303, 400, 511
BseNI ACTGG 2 cut(s) 75, 540
BseXI GCAGC 5 cut(s) 136, 180, 232, 245, 535
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 2 cut(s) 19, 232
Bso31I GGTCTC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 215
Bsp1407I TGTACA 1 cut(s) 549
Bsp1720I GCTNAGC 1 cut(s) 237
BspCNI CTCAG 3 cut(s) 304, 399, 510
BspMAI CTGCAG 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 2 cut(s) 75, 540
BssECI CCNNGG 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 119
BstAUI TGTACA 1 cut(s) 549
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 4 cut(s) 237, 312, 386, 497
BstF5I GGATG 2 cut(s) 127, 307
BstMAI GTCTC 2 cut(s) 19, 232
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 14, 117
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 5 cut(s) 136, 180, 232, 245, 535
BstV2I GAAGAC 2 cut(s) 78, 477
BtsCI GGATG 2 cut(s) 127, 307
BtsIMutI CAGTG 2 cut(s) 82, 394
Cac8I GCNNGC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 550
CviAII CATG 2 cut(s) 187, 547
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 4 cut(s) 237, 312, 386, 497
Eco130I CCWWGG 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 190, 550
FaiI YATR 8 cut(s) 143, 155, 188, 224, 321, 548, 558, 570
FatI CATG 2 cut(s) 186, 546
Fnu4HI GCNGC 5 cut(s) 150, 169, 234, 246, 524
FokI GGATG 2 cut(s) 134, 314
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 5 cut(s) 150, 169, 234, 246, 524
GluI GCNGC 5 cut(s) 150, 169, 234, 246, 524
HapII CCGG 1 cut(s) 15
Hin1II CATG 2 cut(s) 190, 550
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 15
HphI GGTGA 4 cut(s) 192, 433, 438, 473
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 4 cut(s) 64, 257, 313, 490
Hpy8I GTNNAC 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 194, 233, 516
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 4 cut(s) 237, 312, 386, 497
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 2 cut(s) 190, 550
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 8 cut(s) 28, 88, 104, 121, 131, 255, 521, 538
Lsp1109I GCAGC 5 cut(s) 136, 180, 232, 245, 535
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 2 cut(s) 77, 198
MboII GAAGA 2 cut(s) 78, 477
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 8 cut(s) 69, 91, 112, 216, 250, 305, 349, 571
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 3 cut(s) 40, 251, 412
MseI TTAA 2 cut(s) 399, 574
MslI CAYNNNNRTG 1 cut(s) 545
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 16, 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 1 cut(s) 16
NlaIII CATG 2 cut(s) 190, 550
NmuCI GTSAC 2 cut(s) 77, 198
PfoI TCCNGGA 2 cut(s) 14, 117
PkrI GCNGC 5 cut(s) 151, 170, 235, 247, 525
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PstI CTGCAG 1 cut(s) 235
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
RseI CAYNNNNRTG 1 cut(s) 545
SaqAI TTAA 2 cut(s) 399, 574
SatI GCNGC 5 cut(s) 150, 169, 234, 246, 524
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 16, 119
SduI GDGCHC 1 cut(s) 215
SetI ASST 9 cut(s) 238, 262, 285, 320, 367, 387, 423, 528, 557
SfcI CTRYAG 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 545
Sse9I AATT 8 cut(s) 69, 91, 112, 216, 250, 305, 349, 571
StyD4I CCNGG 2 cut(s) 14, 117
StyI CCWWGG 1 cut(s) 286
TaiI ACGT 1 cut(s) 367
TaqI TCGA 1 cut(s) 209
TasI AATT 8 cut(s) 69, 91, 112, 216, 250, 305, 349, 571
TatI WGTACW 1 cut(s) 549
Tru1I TTAA 2 cut(s) 399, 574
Tru9I TTAA 2 cut(s) 399, 574
TscAI CASTG 2 cut(s) 82, 394
TseFI GTSAC 2 cut(s) 77, 198
TseI GCWGC 5 cut(s) 149, 168, 233, 245, 523
Tsp45I GTSAC 2 cut(s) 77, 198
TspDTI ATGAA 2 cut(s) 318, 535
TspRI CASTG 2 cut(s) 82, 394
XapI RAATTY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.