Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Forward (+)

23734751 .. 23737250

Gene Structure 2500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g23130.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCCAATCATATCAACGAGGACAGGGAACAAGATGTTCTCAGTGAAAAGACTAGGCACATCAGAAGTTACGTGGCTATATATGATGGTGATTTTTGCATGTCTATTTATATGTCCCAGTTGCTGCTGAGTTGCATGGATTCAAATTTCACTACTTCAACTCCGGAGTCACATCCTGAGGCAACGGATTTTCTGTCGCTTGCATGGTGCAACTTTGCAGTGCAAGCTTTCCAACCAGACCAGCAAGATCGATCAGTGGTTCTACTCGATGATCCGATTGACAAGTTTAAGAGCCACAACAAGACCATGCATCCAGAATTGAACTACACCGGCTTTCTTCGGAAAAAATGGATGTCATGGAAGATAGTGCCATTTGAGAACATGTCGATCAAGAAATGGCTTAAAGACATTAAGCAAAGGCGGAAAGAGGAGCAGAGGCTGCAAAGAGCTGAAGTCCATGTAGCGGCTGCACTTGTTGCTATTGCAGCTGAAAAATCAGAAAATGATGGGTCAAGGAAGCTGCCATCGCTTCTGCAGCCATGCTGGTGGCGGCCCAGTAAGCACAACATAATTTTTTTTCATTGGTGTGGTTTGAAACATATAGCATTGAAGGGAGCAGCTACATTGAAAGAAAGATCAGGATGCCGCAAGAAGAGACTAAATGGGACTGCACCTGTGATGCCTATCGAGGACAACCCTGACGCTGAGGAGGTCGATTTCGACTTTGACAAGCATAGATCAATGCTTGCAATAGGTTCCCAGCTCACCACTGAAACACCTGACGGTATCATACTGGACATGTACGCAGAGCTGTATAAAGATTCAGAAGCGGGTGAGAATGGTATGGGTTATCTCATCGTGTTAACGACAAGTAAGGGGGCGTTCAAGCTAGACATGGAAGCCGACTATCAACGGTATAAGACAAGGGCGACAACCATTAACCATATGCTCATGGTCTCTACTTCATTTATGAAATATCATCTTCAATACTACAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

334

Amino Acids

38.55

Weight (kDa)

7.19

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	5 cut(s)	421, 464, 550, 646, 830
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	803
AfiI	CCNNNNNNNGG	1 cut(s)	463
AflIII	ACRYGT	2 cut(s)	381, 798
AgsI	TTSAA	8 cut(s)	144, 159, 322, 595, 610, 628, 886, 986
AluBI	AGCT	8 cut(s)	227, 449, 488, 520, 620, 763, 811, 889
AluI	AGCT	8 cut(s)	227, 449, 488, 520, 620, 763, 811, 889
Alw26I	GTCTC	2 cut(s)	649, 961
AlwI	GGATC	1 cut(s)	266
AlwNI	CAGNNNCTG	2 cut(s)	124, 439
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	7 cut(s)	124, 439, 467, 485, 520, 535, 617
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	552
AsuHPI	GGTGA	3 cut(s)	101, 757, 845
AxyI	CCTNAGG	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	7 cut(s)	111, 426, 454, 497, 507, 547, 629
BccI	CCATC	3 cut(s)	80, 500, 532
BcoDI	GTCTC	2 cut(s)	649, 961
BfaI	CTAG	3 cut(s)	54, 890, 1000
BfmI	CTRYAG	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	1 cut(s)	757
BmrI	ACTGGG	2 cut(s)	112, 549
BmsI	GCATC	3 cut(s)	319, 632, 669
BmuI	ACTGGG	2 cut(s)	112, 549
Bpu10I	CCTNAGC	1 cut(s)	705
Bsa29I	ATCGAT	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	683
BsaI	GGTCTC	1 cut(s)	961
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	3 cut(s)	118, 555, 798
Bse21I	CCTNAGG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	683
BseAI	TCCGGA	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	250
BseGI	GGATG	4 cut(s)	172, 310, 357, 647
BseJI	GATNNNNATC	1 cut(s)	683
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMII	CTCAG	4 cut(s)	55, 119, 168, 696
BseNI	ACTGG	3 cut(s)	118, 555, 798
BseRI	GAGGAG	2 cut(s)	443, 722
BseXI	GCAGC	7 cut(s)	111, 426, 454, 497, 507, 547, 629
BseYI	CCCAGC	1 cut(s)	759
BsgI	GTGCAG	2 cut(s)	453, 654
BshFI	GGCC	1 cut(s)	553
BshVI	ATCGAT	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	164, 330
BslFI	GGGAC	2 cut(s)	100, 679
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	2 cut(s)	649, 961
BsmFI	GGGAC	2 cut(s)	100, 679
BsnI	GGCC	1 cut(s)	553
Bso31I	GGTCTC	1 cut(s)	961
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	6 cut(s)	247, 251, 271, 387, 635, 737
BspACI	CCGC	5 cut(s)	421, 464, 550, 646, 830
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	4 cut(s)	54, 120, 169, 697
BspDI	ATCGAT	1 cut(s)	250
BspEI	TCCGGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	757
BspMAI	CTGCAG	1 cut(s)	537
BspPI	GGATC	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	961
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	3 cut(s)	118, 555, 798
BssAI	RCCGGY	1 cut(s)	329
BssMI	GATC	6 cut(s)	247, 251, 271, 387, 635, 737
Bst4CI	ACNGT	2 cut(s)	785, 915
Bst6I	CTCTTC	1 cut(s)	647
BstAPI	GCANNNNNTGC	2 cut(s)	439, 476
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	3 cut(s)	201, 225, 747
BstDEI	CTNAG	4 cut(s)	41, 128, 177, 705
BstF5I	GGATG	4 cut(s)	172, 310, 357, 647
BstKTI	GATC	6 cut(s)	250, 254, 274, 390, 638, 740
BstMAI	GTCTC	2 cut(s)	649, 961
BstMBI	GATC	6 cut(s)	247, 251, 271, 387, 635, 737
BstMWI	GCNNNNNNNGC	7 cut(s)	224, 439, 476, 485, 526, 535, 559
BstNSI	RCATGY	3 cut(s)	103, 385, 802
BstSFI	CTRYAG	1 cut(s)	533
BstV1I	GCAGC	7 cut(s)	111, 426, 454, 497, 507, 547, 629
BstXI	CCANNNNNNTGG	1 cut(s)	546
Bsu15I	ATCGAT	1 cut(s)	250
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	553
BsuTUI	ATCGAT	1 cut(s)	250
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	4 cut(s)	172, 310, 357, 647
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	4 cut(s)	49, 225, 261, 768
Cac8I	GCNNGC	3 cut(s)	201, 225, 747
CaiI	CAGNNNCTG	2 cut(s)	124, 439
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	552
ClaI	ATCGAT	1 cut(s)	250
CseI	GACGC	1 cut(s)	710
Csp6I	GTAC	1 cut(s)	802
CviQI	GTAC	1 cut(s)	802
DdeI	CTNAG	4 cut(s)	41, 128, 177, 705
DpnI	GATC	6 cut(s)	249, 253, 273, 389, 637, 739
DpnII	GATC	6 cut(s)	247, 251, 271, 387, 635, 737
Eam1104I	CTCTTC	1 cut(s)	647
EarI	CTCTTC	1 cut(s)	647
EciI	GGCGGA	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	961
Eco57I	CTGAAG	1 cut(s)	471
Eco81I	CCTNAGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	312
FaqI	GGGAC	2 cut(s)	100, 679
FauI	CCCGC	1 cut(s)	823
FauNDI	CATATG	1 cut(s)	945
FokI	GGATG	4 cut(s)	159, 297, 364, 654
FspBI	CTAG	3 cut(s)	54, 890, 1000
GsaI	CCCAGC	1 cut(s)	763
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	2 cut(s)	164, 330
HgaI	GACGC	1 cut(s)	710
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	3 cut(s)	140, 167, 821
HpaI	GTTAAC	1 cut(s)	864
HpaII	CCGG	2 cut(s)	164, 330
HphI	GGTGA	3 cut(s)	101, 757, 845
Hpy166II	GTNNAC	1 cut(s)	864
Hpy188I	TCNGA	5 cut(s)	65, 276, 342, 499, 826
Hpy188III	TCNNGA	5 cut(s)	164, 176, 314, 391, 639
Hpy8I	GTNNAC	1 cut(s)	864
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	2 cut(s)	785, 915
HpyCH4IV	ACGT	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	7 cut(s)	224, 439, 476, 485, 526, 535, 559
HpyF3I	CTNAG	4 cut(s)	41, 128, 177, 705
HpySE526I	ACGT	1 cut(s)	72
Kpn2I	TCCGGA	1 cut(s)	163
KspAI	GTTAAC	1 cut(s)	864
Kzo9I	GATC	6 cut(s)	247, 251, 271, 387, 635, 737
LmnI	GCTCC	2 cut(s)	430, 614
Lsp1109I	GCAGC	7 cut(s)	111, 426, 454, 497, 507, 547, 629
LweI	GCATC	3 cut(s)	319, 632, 669
MaeI	CTAG	3 cut(s)	54, 890, 1000
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	68, 168
MalI	GATC	6 cut(s)	249, 253, 273, 389, 637, 739
MboI	GATC	6 cut(s)	247, 251, 271, 387, 635, 737
MboII	GAAGA	4 cut(s)	329, 373, 664, 974
MluCI	AATT	3 cut(s)	145, 317, 570
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	7 cut(s)	13, 172, 421, 429, 682, 700, 703
Mph1103I	ATGCAT	1 cut(s)	312
MroI	TCCGGA	1 cut(s)	163
MseI	TTAA	5 cut(s)	288, 402, 411, 863, 939
MslI	CAYNNNNRTG	2 cut(s)	544, 585
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	2 cut(s)	164, 330
MwoI	GCNNNNNNNGC	7 cut(s)	224, 439, 476, 485, 526, 535, 559
NdeI	CATATG	1 cut(s)	945
NdeII	GATC	6 cut(s)	247, 251, 271, 387, 635, 737
NlaIV	GGNNCC	1 cut(s)	757
NmuCI	GTSAC	1 cut(s)	168
NsiI	ATGCAT	1 cut(s)	312
NspI	RCATGY	3 cut(s)	103, 385, 802
PciI	ACATGT	2 cut(s)	381, 798
PfeI	GAWTC	2 cut(s)	140, 821
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	73
PscI	ACATGT	2 cut(s)	381, 798
PspFI	CCCAGC	1 cut(s)	759
PspN4I	GGNNCC	1 cut(s)	757
PspPI	GGNCC	1 cut(s)	552
PstI	CTGCAG	1 cut(s)	537
PstNI	CAGNNNCTG	2 cut(s)	124, 439
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	803
RsaNI	GTAC	1 cut(s)	802
RseI	CAYNNNNRTG	2 cut(s)	544, 585
SaqAI	TTAA	5 cut(s)	288, 402, 411, 863, 939
Sau3AI	GATC	6 cut(s)	247, 251, 271, 387, 635, 737
Sau96I	GGNCC	1 cut(s)	552
SchI	GAGTC	1 cut(s)	176
SfaNI	GCATC	3 cut(s)	319, 632, 669
SfcI	CTRYAG	1 cut(s)	533
SmiMI	CAYNNNNRTG	2 cut(s)	544, 585
Sse9I	AATT	3 cut(s)	145, 317, 570
SsiI	CCGC	5 cut(s)	421, 464, 550, 646, 830
SspMI	CTAG	3 cut(s)	54, 890, 1000
TaaI	ACNGT	2 cut(s)	785, 915
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	6 cut(s)	250, 267, 386, 687, 714, 720
TasI	AATT	3 cut(s)	145, 317, 570
TauI	GCSGC	3 cut(s)	467, 553, 648
TfiI	GAWTC	2 cut(s)	140, 821
Tru1I	TTAA	5 cut(s)	288, 402, 411, 863, 939
Tru9I	TTAA	5 cut(s)	288, 402, 411, 863, 939
TscAI	CASTG	4 cut(s)	49, 225, 261, 775
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	7 cut(s)	124, 439, 467, 485, 520, 535, 617
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	3 cut(s)	569, 954, 986
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	4 cut(s)	49, 225, 261, 775
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	3 cut(s)	103, 385, 802
XspI	CTAG	3 cut(s)	54, 890, 1000
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.