Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Reverse (-)

26516959 .. 26519791

Gene Structure 2833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG134400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAATATAATGATGCAGCTTTTAGATCCCAGGTTCATGGATTCGAATTTCAGCCCAAGCCCTACGGAGGCACATCCTGATACGATGGATTTTCTGTCTCTTGCATGGTGCAATTTTGCAGTACAAGCTTTGCAACCAGAGCAACAAGACCACCAATCTCTAGTTTCGTTAAGTGATCCAATTATCAAGTTTGAGAGCCAAAACATGACTCAAATCACGAAGTTGGACAAGAATGCAAAGATGGATGGTGCAGATGCCAAGCCTTTACCACCATGGAAATCTAATGATGTAAAGTCATGGATATGGATGCAACAAGCCATGCATCCAGAATTGAACTACAACAGCTATTTCCGAAAGAAATGGCTGTCATGGAAGATAGTGCCATTCAAGAACATGTCGATCAAGAAGTGGCTGAAGGAGATTAAAGAAAGGCGGAAAGAGGAACACAGGTTGCAAAGAGCTGAAGTCCATGCAGCTATATCTATGGCAGGTGTGGCGGCAGCGCTTGCTACCATTGCGGCTGAAAGCTCTGGAAAGAATGAGAGCACTGCCAAGGAAGCAGCTGTGGCTTCTGCAGCTGCTCTGGTGGCAGCCCAGTGTGCAAAAGTTGCAGAAGCAATGGGAGCAAAGAAGGAACAGATCAGCAGTGTAATAGGTTCAGCCATGAGTAGTACAAGTGCAAGCGATATCTTAACCCTCACAGCTGCAGCTGCAACATCATTAAAAGGAGCAGCTACCCTTAAAGCAAGATCAGGATGCAAGAATATGCTACATGGGGGTGCACCCGTGCTGCCCATCGAGGAGAGCCATGAGGTTGACTTCGACTTTGAAAAGTGTAGGTCAATGCTCGGAATGGGTGCGCACCTCAGCATCGAAACACCAGATGGGAAGTACATGGTCAGATCAGTGTCCGTCATCCTAAGCAGTGAAGCCAAGGTTGTTCTTAAAATAAGGAAGCTCAGTCTGTTAAAAAGCAAGCAGGAAAGTATCATTCTGGACATGCATGCAGAGCTGTATAAAGATTCAGAGGCAGAGACTGGTACAGGTTATCTTATCGTCTTGACAACAAGTAAGGGGACATTCAAACTTGACATGGAAGATGACTATCAACGTTACACAACATGGGCCACAACCATTAATCATATGCTGATGCTCTCTACTTCATTATCAAAATATCATCTTCAGTTCTACAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

399

Amino Acids

44.27

Weight (kDa)

8.44

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	25 - 268	4.1e-72	Auxin canalisation
PH_2	PF08458	289 - 386	5.5e-19	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
Acc16I	TGCGCA	1 cut(s)	861
Acc36I	ACCTGC	1 cut(s)	479
AciI	CCGC	3 cut(s)	433, 497, 518
AclI	AACGTT	1 cut(s)	1111
AclWI	GGATC	2 cut(s)	20, 170
AcsI	RAATTY	1 cut(s)	46
AcuI	CTGAAG	3 cut(s)	434, 483, 1166
AfaI	GTAC	4 cut(s)	123, 673, 893, 1042
AfeI	AGCGCT	1 cut(s)	504
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	4 cut(s)	334, 388, 830, 1084
AjnI	CCWGG	1 cut(s)	29
Alw21I	GWGCWC	2 cut(s)	548, 784
Alw26I	GTCTC	2 cut(s)	102, 1028
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	2 cut(s)	20, 170
AlwNI	CAGNNNCTG	1 cut(s)	1037
Aor51HI	AGCGCT	1 cut(s)	504
AoxI	GGCC	1 cut(s)	1125
ApaLI	GTGCAC	1 cut(s)	780
ApoI	RAATTY	1 cut(s)	46
ArsI	GACNNNNNNTTYG	2 cut(s)	809, 841
AseI	ATTAAT	1 cut(s)	1137
AspLEI	GCGC	2 cut(s)	505, 862
AspS9I	GGNCC	1 cut(s)	1125
AsuII	TTCGAA	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	784
Bbv12I	GWGCWC	2 cut(s)	548, 784
BbvCI	CCTCAGC	1 cut(s)	866
BccI	CCATC	5 cut(s)	79, 235, 239, 803, 878
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	102, 1028
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	2 cut(s)	573, 705
BfoI	RGCGCY	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	479
Bme1390I	CCNGG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	1125
BmrFI	CCNGG	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	7 cut(s)	3, 244, 297, 331, 746, 879, 1140
BmuI	ACTGGG	1 cut(s)	589
Bpu10I	CCTNAGC	2 cut(s)	866, 920
Bpu14I	TTCGAA	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	1104
BsaJI	CCNNGG	4 cut(s)	29, 272, 552, 933
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	595, 1042
Bse3DI	GCAATG	2 cut(s)	513, 624
Bse8I	GATNNNNATC	1 cut(s)	1104
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	4 cut(s)	29, 272, 552, 933
BseGI	GGATG	6 cut(s)	73, 250, 312, 322, 761, 915
BseJI	GATNNNNATC	1 cut(s)	1104
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	513, 624
BseMII	CTCAG	2 cut(s)	880, 973
BseNI	ACTGG	2 cut(s)	595, 1042
BseRI	GAGGAG	1 cut(s)	815
BseSI	GKGCMC	1 cut(s)	784
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	1127
BsiHKAI	GWGCWC	2 cut(s)	548, 784
BslFI	GGGAC	1 cut(s)	1090
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	102, 1028
BsmFI	GGGAC	1 cut(s)	1090
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	1127
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	548, 784
Bsp143I	GATC	6 cut(s)	25, 175, 399, 639, 749, 902
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	3 cut(s)	433, 497, 518
BspANI	GGCC	1 cut(s)	1127
BspCNI	CTCAG	2 cut(s)	879, 972
BspMAI	CTGCAG	2 cut(s)	577, 709
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	2 cut(s)	20, 170
BspT104I	TTCGAA	1 cut(s)	44
BsrDI	GCAATG	2 cut(s)	513, 624
BsrI	ACTGG	2 cut(s)	595, 1042
BssECI	CCNNGG	4 cut(s)	29, 272, 552, 933
BssMI	GATC	6 cut(s)	25, 175, 399, 639, 749, 902
BssT1I	CCWWGG	3 cut(s)	272, 552, 933
Bst2UI	CCWGG	1 cut(s)	31
BstAPI	GCANNNNNTGC	2 cut(s)	506, 608
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	4 cut(s)	507, 682, 977, 1005
BstDEI	CTNAG	3 cut(s)	866, 920, 959
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	6 cut(s)	73, 250, 312, 322, 761, 915
BstH2I	RGCGCY	1 cut(s)	506
BstHHI	GCGC	2 cut(s)	505, 862
BstKTI	GATC	6 cut(s)	28, 178, 402, 642, 752, 905
BstMAI	GTCTC	2 cut(s)	102, 1028
BstMBI	GATC	6 cut(s)	25, 175, 399, 639, 749, 902
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	3 cut(s)	397, 1003, 1007
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	2 cut(s)	573, 705
BstSLI	GKGCMC	1 cut(s)	784
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	1127
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	6 cut(s)	73, 250, 312, 322, 761, 915
BtsI	GCAGTG	3 cut(s)	546, 652, 931
BtsIMutI	CAGTG	5 cut(s)	546, 602, 652, 912, 931
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	4 cut(s)	507, 682, 977, 1005
CaiI	CAGNNNCTG	1 cut(s)	1037
CfoI	GCGC	2 cut(s)	505, 862
Cfr13I	GGNCC	1 cut(s)	1125
Csp6I	GTAC	4 cut(s)	122, 672, 892, 1041
CviQI	GTAC	4 cut(s)	122, 672, 892, 1041
DdeI	CTNAG	3 cut(s)	866, 920, 959
DpnI	GATC	6 cut(s)	27, 177, 401, 641, 751, 904
DpnII	GATC	6 cut(s)	25, 175, 399, 639, 749, 902
EciI	GGCGGA	1 cut(s)	448
Eco130I	CCWWGG	3 cut(s)	272, 552, 933
Eco32I	GATATC	1 cut(s)	688
Eco47III	AGCGCT	1 cut(s)	504
Eco57I	CTGAAG	3 cut(s)	434, 483, 1166
EcoRII	CCWGG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	688
EcoT14I	CCWWGG	3 cut(s)	272, 552, 933
EcoT22I	ATGCAT	2 cut(s)	324, 1005
ErhI	CCWWGG	3 cut(s)	272, 552, 933
FaqI	GGGAC	1 cut(s)	1090
FauNDI	CATATG	1 cut(s)	1143
FokI	GGATG	6 cut(s)	60, 257, 309, 319, 768, 902
FspAI	RTGCGCAY	1 cut(s)	861
FspBI	CTAG	1 cut(s)	161
FspI	TGCGCA	1 cut(s)	861
GlaI	GCGC	2 cut(s)	504, 861
HaeII	RGCGCY	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	1127
HhaI	GCGC	2 cut(s)	505, 862
Hin6I	GCGC	2 cut(s)	503, 860
HinP1I	GCGC	2 cut(s)	503, 860
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	3 cut(s)	41, 208, 1022
Hpy166II	GTNNAC	2 cut(s)	782, 817
Hpy188I	TCNGA	4 cut(s)	353, 851, 902, 1027
Hpy188III	TCNNGA	9 cut(s)	77, 217, 326, 388, 403, 531, 753, 995, 1060
Hpy8I	GTNNAC	2 cut(s)	782, 817
HpyAV	CCTTC	2 cut(s)	409, 625
HpyCH4IV	ACGT	1 cut(s)	1111
HpyF3I	CTNAG	3 cut(s)	866, 920, 959
HpySE526I	ACGT	1 cut(s)	1111
HspAI	GCGC	2 cut(s)	503, 860
Kzo9I	GATC	6 cut(s)	25, 175, 399, 639, 749, 902
LmnI	GCTCC	2 cut(s)	623, 728
LweI	GCATC	7 cut(s)	3, 244, 297, 331, 746, 879, 1140
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	1111
MaeIII	GTNAC	1 cut(s)	1112
MalI	GATC	6 cut(s)	27, 177, 401, 641, 751, 904
MboI	GATC	6 cut(s)	25, 175, 399, 639, 749, 902
MboII	GAAGA	3 cut(s)	385, 1109, 1172
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	548, 784
MluCI	AATT	4 cut(s)	46, 112, 180, 329
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	7 cut(s)	61, 433, 707, 793, 805, 875, 1021
Mph1103I	ATGCAT	2 cut(s)	324, 1005
MseI	TTAA	8 cut(s)	170, 423, 692, 722, 741, 945, 968, 1137
MslI	CAYNNNNRTG	2 cut(s)	301, 777
MspA1I	CMGCKG	4 cut(s)	563, 578, 704, 710
MspR9I	CCNGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	272
NdeI	CATATG	1 cut(s)	1143
NdeII	GATC	6 cut(s)	25, 175, 399, 639, 749, 902
NsbI	TGCGCA	1 cut(s)	861
NsiI	ATGCAT	2 cut(s)	324, 1005
NspI	RCATGY	3 cut(s)	397, 1003, 1007
NspV	TTCGAA	1 cut(s)	44
PaeI	GCATGC	1 cut(s)	1007
PaqCI	CACCTGC	1 cut(s)	479
PciI	ACATGT	1 cut(s)	393
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	41, 1022
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PscI	ACATGT	1 cut(s)	393
PshBI	ATTAAT	1 cut(s)	1137
Psp1406I	AACGTT	1 cut(s)	1111
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	1125
PstI	CTGCAG	2 cut(s)	577, 709
PstNI	CAGNNNCTG	1 cut(s)	1037
PsuI	RGATCY	1 cut(s)	25
PvuII	CAGCTG	4 cut(s)	563, 578, 704, 710
RsaI	GTAC	4 cut(s)	123, 673, 893, 1042
RsaNI	GTAC	4 cut(s)	122, 672, 892, 1041
RseI	CAYNNNNRTG	2 cut(s)	301, 777
SaqAI	TTAA	8 cut(s)	170, 423, 692, 722, 741, 945, 968, 1137
Sau3AI	GATC	6 cut(s)	25, 175, 399, 639, 749, 902
Sau96I	GGNCC	1 cut(s)	1125
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	548, 784
SfaNI	GCATC	7 cut(s)	3, 244, 297, 331, 746, 879, 1140
SfcI	CTRYAG	2 cut(s)	573, 705
SfuI	TTCGAA	1 cut(s)	44
SmiMI	CAYNNNNRTG	2 cut(s)	301, 777
SphI	GCATGC	1 cut(s)	1007
Sse9I	AATT	4 cut(s)	46, 112, 180, 329
SsiI	CCGC	3 cut(s)	433, 497, 518
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	3 cut(s)	272, 552, 933
TaiI	ACGT	1 cut(s)	1114
TaqI	TCGA	5 cut(s)	44, 398, 798, 822, 873
TasI	AATT	4 cut(s)	46, 112, 180, 329
TatI	WGTACW	3 cut(s)	121, 671, 891
TauI	GCSGC	2 cut(s)	500, 521
TfiI	GAWTC	2 cut(s)	41, 1022
Tru1I	TTAA	8 cut(s)	170, 423, 692, 722, 741, 945, 968, 1137
Tru9I	TTAA	8 cut(s)	170, 423, 692, 722, 741, 945, 968, 1137
TscAI	CASTG	5 cut(s)	553, 602, 652, 912, 931
TspDTI	ATGAA	3 cut(s)	17, 25, 1152
TspGWI	ACGGA	2 cut(s)	80, 901
TspRI	CASTG	5 cut(s)	553, 602, 652, 912, 931
VneI	GTGCAC	1 cut(s)	780
VspI	ATTAAT	1 cut(s)	1137
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	3 cut(s)	397, 1003, 1007
XspI	CTAG	1 cut(s)	161
Zsp2I	ATGCAT	2 cut(s)	324, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.