Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Reverse (-)

7782956 .. 7786417

Gene Structure 3462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G097500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGATTCACATTTCAGTCCAAGTCCTTCTGAGGCACATCCTGAGACAATGGATTTTCTTTCCCTTGCATGGTGCAACTTTGCAGTTCAAGCTTTCCAACCAGAGCAACAAGACCAATCTGTGGTTCTACTAGACGATCCGATTGTGAAGTTTGAGAGTCACAAGGAGGCTCCTTACATGCTTTCCAACTTTGCACAGATGGATGATGCAGATCTCAAGCCTCCACCACCTTGGAAATCCAATGATGTGAAGTCATTTATATGGATGCAACAAGCCATGCATCCAGAGTTGAACTACAACAGTTTTTTCCGGAAGAAATGGATGTCTTGGAAGATAGTCCCATTCAAGAATATGTCAATCAAGAAATGGCTAAAAGATATTAAGGAAAGGCGAAAAGAGGAACACAGGTTGCAAAGAGCTGAAGTCCATGCAGCAATATCTATGGCAGGTGTTGCAGCTGCTCTTGCAGCCATTGCAGCTGAAGGCTCAGACAACAATGGCTCAAGCACTGCCAAGGAGGCCGCAGTGGCTTCTGCAGCCGCGCTAGTGGCGGCGCAGTGTGCGAAAGTTGCAGGAGCAATGGGGGCAAAGAAGGAGCAGCTCAGCAGTGTGATAGGTTCAGCCATGACTAGTACAAGTGCAAGTGACATCTTAACTCTAACAGCTGCAGCTACGACATCATTGAAGGGAGCAGCTACATTAAAAGAAAGATCAGGATGCAAGAACAGACTAAATGGGGCTGCACCAGTGATGCCCATCGAGGACAACCCGGAGGTTGACTTCGACTTTGAGAAGTATAGATCAATGCTTGCAATAGGTGCCCAGCTCAGCATTGAAACACCAGATGGGAAGTACGTGGTTAGATCAGTGTCTGTCATCCTGAACAGTGAAGCCAAGGTTGTTCTTAAAATGAGGAAGCTCAGTCTGTTGAAAAGCAAAAAGGAAAGTATCATACTGGACATGTATGCGGAGCTGTATAAAGATTCAGAGGCAGCAGATGAGAATGGCACGGGTTATCTTATCGTGTTAACAACGAGTAGGGGTACATTCAAGCTAGACATGGAAGACGACTATCAACGTTACAAGACATGGGCCACAACCATTAACCATATGCTCATGGTTTCTACTTCATTTACGAAATATCATCTTCAATTCTACAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

389

Amino Acids

43.08

Weight (kDa)

7.67

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	437
AccB1I	GGYRCC	1 cut(s)	818
AccB7I	CCANNNNNTGG	1 cut(s)	121
AccII	CGCG	1 cut(s)	542
AccIII	TCCGGA	1 cut(s)	309
AciI	CCGC	4 cut(s)	522, 540, 551, 968
AclI	AACGTT	1 cut(s)	1078
AclWI	GGATC	1 cut(s)	131
AcuI	CTGAAG	2 cut(s)	441, 501
AfaI	GTAC	3 cut(s)	634, 854, 1045
AfiI	CCNNNNNNNGG	2 cut(s)	69, 121
AflIII	ACRYGT	1 cut(s)	960
AgsI	TTSAA	8 cut(s)	89, 292, 346, 685, 836, 931, 1051, 1151
AhlI	ACTAGT	1 cut(s)	629
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	872
Aor13HI	TCCGGA	1 cut(s)	309
AoxI	GGCC	2 cut(s)	519, 1092
ArsI	GACNNNNNNTTYG	2 cut(s)	770, 802
AspLEI	GCGC	2 cut(s)	544, 556
AspS9I	GGNCC	1 cut(s)	1092
AsuC2I	CCSGG	1 cut(s)	770
BaeGI	GKGCMC	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	818
BbsI	GAAGAC	1 cut(s)	1071
BccI	CCATC	3 cut(s)	193, 764, 839
BcnI	CCSGG	1 cut(s)	770
BcoDI	GTCTC	1 cut(s)	38
BcuI	ACTAGT	1 cut(s)	629
BfaI	CTAG	4 cut(s)	131, 545, 630, 1055
BfmI	CTRYAG	2 cut(s)	534, 666
BfuAI	ACCTGC	1 cut(s)	437
BglI	GCCNNNNNGGC	2 cut(s)	518, 527
BglII	AGATCT	1 cut(s)	211
BlpI	GCTNAGC	2 cut(s)	602, 827
Bme1390I	CCNGG	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	1092
BmiI	GGNNCC	2 cut(s)	171, 820
BmrFI	CCNGG	1 cut(s)	770
BmsI	GCATC	5 cut(s)	196, 255, 289, 707, 741
BpiI	GAAGAC	1 cut(s)	1071
Bpu1102I	GCTNAGC	2 cut(s)	602, 827
BpuEI	CTTGAG	2 cut(s)	200, 487
BpuMI	CCSGG	1 cut(s)	770
BsaAI	YACGTR	1 cut(s)	856
BsaBI	GATNNNNATC	2 cut(s)	210, 755
BsaJI	CCNNGG	3 cut(s)	230, 513, 894
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 121
Bse1I	ACTGG	2 cut(s)	746, 960
Bse3DI	GCAATG	2 cut(s)	471, 585
Bse8I	GATNNNNATC	2 cut(s)	210, 755
BseAI	TCCGGA	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	230, 513, 894
BseGI	GGATG	7 cut(s)	37, 208, 270, 280, 327, 722, 876
BseJI	GATNNNNATC	2 cut(s)	210, 755
BseLI	CCNNNNNNNGG	2 cut(s)	69, 121
BseMI	GCAATG	2 cut(s)	471, 585
BseMII	CTCAG	6 cut(s)	21, 33, 501, 616, 841, 934
BseNI	ACTGG	2 cut(s)	746, 960
BseSI	GKGCMC	1 cut(s)	823
BseYI	CCCAGC	1 cut(s)	822
BsgI	GTGCAG	1 cut(s)	726
Bsh1236I	CGCG	1 cut(s)	542
BshFI	GGCC	2 cut(s)	521, 1094
BshNI	GGYRCC	1 cut(s)	818
BsiSI	CCGG	2 cut(s)	310, 770
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	69, 121
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	2 cut(s)	521, 1094
Bsp1286I	GDGCHC	1 cut(s)	823
Bsp13I	TCCGGA	1 cut(s)	309
Bsp143I	GATC	5 cut(s)	136, 211, 710, 800, 863
Bsp1720I	GCTNAGC	2 cut(s)	602, 827
BspACI	CCGC	4 cut(s)	522, 540, 551, 968
BspANI	GGCC	2 cut(s)	521, 1094
BspCNI	CTCAG	6 cut(s)	22, 34, 500, 615, 840, 933
BspEI	TCCGGA	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	542
BspLI	GGNNCC	2 cut(s)	171, 820
BspMAI	CTGCAG	2 cut(s)	538, 670
BspMI	ACCTGC	1 cut(s)	437
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	818
BsrDI	GCAATG	2 cut(s)	471, 585
BsrI	ACTGG	2 cut(s)	746, 960
BssECI	CCNNGG	3 cut(s)	230, 513, 894
BssMI	GATC	5 cut(s)	136, 211, 710, 800, 863
BssT1I	CCWWGG	3 cut(s)	230, 513, 894
Bst4CI	ACNGT	2 cut(s)	302, 887
BstAPI	GCANNNNNTGC	3 cut(s)	452, 473, 818
BstBAI	YACGTR	1 cut(s)	856
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	6 cut(s)	30, 42, 487, 602, 827, 920
BstF5I	GGATG	7 cut(s)	37, 208, 270, 280, 327, 722, 876
BstFNI	CGCG	1 cut(s)	542
BstHHI	GCGC	2 cut(s)	544, 556
BstKTI	GATC	5 cut(s)	139, 214, 713, 803, 866
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	5 cut(s)	136, 211, 710, 800, 863
BstNSI	RCATGY	2 cut(s)	181, 964
BstSCI	CCNGG	1 cut(s)	768
BstSFI	CTRYAG	2 cut(s)	534, 666
BstSLI	GKGCMC	1 cut(s)	823
BstUI	CGCG	1 cut(s)	542
BstV2I	GAAGAC	1 cut(s)	1071
BstX2I	RGATCY	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	521, 1094
BtsCI	GGATG	7 cut(s)	37, 208, 270, 280, 327, 722, 876
BtsI	GCAGTG	4 cut(s)	507, 531, 563, 613
BtsIMutI	CAGTG	7 cut(s)	507, 531, 563, 613, 753, 873, 892
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	1 cut(s)	810
CaiI	CAGNNNCTG	1 cut(s)	872
CfoI	GCGC	2 cut(s)	544, 556
Cfr13I	GGNCC	1 cut(s)	1092
Csp6I	GTAC	3 cut(s)	633, 853, 1044
CviAII	CATG	9 cut(s)	69, 178, 277, 428, 625, 961, 1060, 1089, 1117
CviQI	GTAC	3 cut(s)	633, 853, 1044
DdeI	CTNAG	6 cut(s)	30, 42, 487, 602, 827, 920
DpnI	GATC	5 cut(s)	138, 213, 712, 802, 865
DpnII	GATC	5 cut(s)	136, 211, 710, 800, 863
Eco130I	CCWWGG	3 cut(s)	230, 513, 894
Eco57I	CTGAAG	2 cut(s)	441, 501
EcoT14I	CCWWGG	3 cut(s)	230, 513, 894
EcoT22I	ATGCAT	1 cut(s)	282
ErhI	CCWWGG	3 cut(s)	230, 513, 894
FaeI	CATG	9 cut(s)	72, 181, 280, 431, 628, 964, 1063, 1092, 1120
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	9 cut(s)	68, 177, 276, 427, 624, 960, 1059, 1088, 1116
FauNDI	CATATG	1 cut(s)	1110
FokI	GGATG	7 cut(s)	24, 215, 267, 277, 334, 729, 863
FspBI	CTAG	4 cut(s)	131, 545, 630, 1055
GlaI	GCGC	2 cut(s)	543, 555
GsaI	CCCAGC	1 cut(s)	826
HaeIII	GGCC	2 cut(s)	521, 1094
HapII	CCGG	2 cut(s)	310, 770
HhaI	GCGC	2 cut(s)	544, 556
Hin1II	CATG	9 cut(s)	72, 181, 280, 431, 628, 964, 1063, 1092, 1120
Hin6I	GCGC	2 cut(s)	542, 554
HinP1I	GCGC	2 cut(s)	542, 554
HincII	GTYRAC	2 cut(s)	778, 1029
HindII	GTYRAC	2 cut(s)	778, 1029
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	3 cut(s)	5, 157, 983
HpaI	GTTAAC	1 cut(s)	1029
HpaII	CCGG	2 cut(s)	310, 770
Hpy166II	GTNNAC	2 cut(s)	778, 1029
Hpy188I	TCNGA	4 cut(s)	31, 141, 490, 988
Hpy188III	TCNNGA	7 cut(s)	41, 284, 310, 346, 361, 714, 880
Hpy8I	GTNNAC	2 cut(s)	778, 1029
HpyAV	CCTTC	4 cut(s)	36, 476, 586, 679
HpyCH4III	ACNGT	2 cut(s)	302, 887
HpyCH4IV	ACGT	2 cut(s)	855, 1078
HpyF3I	CTNAG	6 cut(s)	30, 42, 487, 602, 827, 920
HpySE526I	ACGT	2 cut(s)	855, 1078
Hsp92II	CATG	9 cut(s)	72, 181, 280, 431, 628, 964, 1063, 1092, 1120
HspAI	GCGC	2 cut(s)	542, 554
Kpn2I	TCCGGA	1 cut(s)	309
KspAI	GTTAAC	1 cut(s)	1029
Kzo9I	GATC	5 cut(s)	136, 211, 710, 800, 863
LmnI	GCTCC	5 cut(s)	175, 575, 595, 689, 970
LweI	GCATC	5 cut(s)	196, 255, 289, 707, 741
MaeI	CTAG	4 cut(s)	131, 545, 630, 1055
MaeII	ACGT	2 cut(s)	855, 1078
MaeIII	GTNAC	3 cut(s)	158, 644, 1079
MalI	GATC	5 cut(s)	138, 213, 712, 802, 865
MboI	GATC	5 cut(s)	136, 211, 710, 800, 863
MboII	GAAGA	4 cut(s)	325, 343, 1076, 1139
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	823
MluCI	AATT	1 cut(s)	1151
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	2 cut(s)	121, 210
MnlI	CCTC	9 cut(s)	25, 160, 231, 391, 511, 754, 766, 906, 982
Mph1103I	ATGCAT	1 cut(s)	282
MroI	TCCGGA	1 cut(s)	309
MseI	TTAA	6 cut(s)	381, 653, 701, 906, 1028, 1104
MslI	CAYNNNNRTG	1 cut(s)	259
MspA1I	CMGCKG	3 cut(s)	458, 479, 665
MspI	CCGG	2 cut(s)	310, 770
MspR9I	CCNGG	1 cut(s)	770
MvnI	CGCG	1 cut(s)	542
NciI	CCSGG	1 cut(s)	770
NdeI	CATATG	1 cut(s)	1110
NdeII	GATC	5 cut(s)	136, 211, 710, 800, 863
NlaIII	CATG	9 cut(s)	72, 181, 280, 431, 628, 964, 1063, 1092, 1120
NlaIV	GGNNCC	2 cut(s)	171, 820
NmuCI	GTSAC	2 cut(s)	158, 644
NsiI	ATGCAT	1 cut(s)	282
NspI	RCATGY	2 cut(s)	181, 964
PaqCI	CACCTGC	1 cut(s)	437
PciI	ACATGT	1 cut(s)	960
PfeI	GAWTC	2 cut(s)	5, 983
PflMI	CCANNNNNTGG	1 cut(s)	121
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	856
PscI	ACATGT	1 cut(s)	960
Psp1406I	AACGTT	1 cut(s)	1078
PspFI	CCCAGC	1 cut(s)	822
PspN4I	GGNNCC	2 cut(s)	171, 820
PspPI	GGNCC	1 cut(s)	1092
PstI	CTGCAG	2 cut(s)	538, 670
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	3 cut(s)	458, 479, 665
RsaI	GTAC	3 cut(s)	634, 854, 1045
RsaNI	GTAC	3 cut(s)	633, 853, 1044
RseI	CAYNNNNRTG	1 cut(s)	259
SaqAI	TTAA	6 cut(s)	381, 653, 701, 906, 1028, 1104
Sau3AI	GATC	5 cut(s)	136, 211, 710, 800, 863
Sau96I	GGNCC	1 cut(s)	1092
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	770
SduI	GDGCHC	1 cut(s)	823
SfaNI	GCATC	5 cut(s)	196, 255, 289, 707, 741
SfcI	CTRYAG	2 cut(s)	534, 666
SmiMI	CAYNNNNRTG	1 cut(s)	259
SmlI	CTYRAG	2 cut(s)	215, 502
SmoI	CTYRAG	2 cut(s)	215, 502
SpeI	ACTAGT	1 cut(s)	629
Sse9I	AATT	1 cut(s)	1151
SsiI	CCGC	4 cut(s)	522, 540, 551, 968
SspMI	CTAG	4 cut(s)	131, 545, 630, 1055
StyD4I	CCNGG	1 cut(s)	768
StyI	CCWWGG	3 cut(s)	230, 513, 894
TaaI	ACNGT	2 cut(s)	302, 887
TaiI	ACGT	2 cut(s)	858, 1081
TaqI	TCGA	2 cut(s)	759, 783
TasI	AATT	1 cut(s)	1151
TatI	WGTACW	1 cut(s)	632
TauI	GCSGC	3 cut(s)	524, 542, 554
TfiI	GAWTC	2 cut(s)	5, 983
Tru1I	TTAA	6 cut(s)	381, 653, 701, 906, 1028, 1104
Tru9I	TTAA	6 cut(s)	381, 653, 701, 906, 1028, 1104
TscAI	CASTG	7 cut(s)	514, 531, 563, 613, 753, 873, 892
TseFI	GTSAC	2 cut(s)	158, 644
Tsp45I	GTSAC	2 cut(s)	158, 644
TspDTI	ATGAA	1 cut(s)	1119
TspRI	CASTG	7 cut(s)	514, 531, 563, 613, 753, 873, 892
Van91I	CCANNNNNTGG	1 cut(s)	121
XceI	RCATGY	2 cut(s)	181, 964
XspI	CTAG	4 cut(s)	131, 545, 630, 1055
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.