Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Reverse (-)

24865856 .. 24868537

Gene Structure 2682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGATTCGAATTTCAGCCCAAGCCCTACGGAGGCACATCCTGATACGATGGATTTTCTGTCTCTTGCATGGTGCAATTTTGCAGTACAAGCTTTGCAACCAGAGCAACAAGACCACCAATCTCTAGTTTCGTTAAGTGATCCAATTATCAAGTTTGAGAGCCAAAACATGACTCAAATCACGTTGGACAAGAATGCAAAGATGGATGGTGCAGATGCCAAGCCTATACCACCATGGAAATCTAATGATGTAAAGTCATGGATATGGATGCAACAAGCCATGCATCCAGAATTGAACTACAACAGCTATTTCCGAAAGAAATGGCTGTCATGGAAGATAGTGCCATTCAAGAACATGTCGATCAAGAAGTGGCTGAAGGAGATTAAAGAAAGGCGGAAAGAGGAACACAGGTTGCAAAGAGCTGAAGTCCATGCAGCTATATCTATGGCAGGTGTGGCAGCAGCGCTTGCTGCCATTGCGGCTGAAAGCTCTGGAAAGAATGAGAGCACTGCTAAGGAAGGAGCTGTGGCTTCTGCAGCTGCTCTGGTGGCAGCCCAGTGTGCAAAAGTTGCAGAAGCAATGGGAGCAAAGAAGGAACAGATCAGCAGTGTAATAGGTTCAGCCATGAGTAGCACAAGTGCAAGTGATATCTTAACCCTCACAGCTGCAGCTGCAACATCATTAAAAGGAGCAGCTACACTTAAAGCAAGATCAGGATGCAAGAATATGCTACATGGGGGTGCACCCGTGCTGCCCATCGAGGAGAGCCATGAGGTTGACTTCGACTTTGAAAAGTGTAGGTCAATGCTTGGAATGGGTGCGCACCTCAGCATCGAAACACCAGATGGGAAGTACACGGTCAGATCAGTGTCCGTCATCCTAAGCAGTGAAGCCAAGGTTGTTCTTAAAATAAGGAAGCTCAGTCTATTGAAAAGCAAGCAGGAAAGTATCATACTGGACATGCATGCAGAGCTGTATAAAGATTCAGAGGCAGAGACTGGTACAGGTTATCTTATCGTCTTGACAACGAGTAAGGGGACATTCAAACTTGACATGGAAGATGACTATCAACGTTACACAACATGGGCCACAACCATTAATCATATGCTGATGCTCTCTACTTCATTATCAAAATATCATCTTCAGTTCTACAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

386

Amino Acids

42.57

Weight (kDa)

8.16

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	13 - 255	1.9e-72	Auxin canalisation
PH_2	PF08458	276 - 373	3.6e-19	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	440
Acc16I	TGCGCA	1 cut(s)	822
Acc36I	ACCTGC	1 cut(s)	440
AciI	CCGC	2 cut(s)	394, 479
AclI	AACGTT	1 cut(s)	1072
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	3 cut(s)	395, 444, 1127
AfaI	GTAC	3 cut(s)	87, 854, 1003
AfeI	AGCGCT	1 cut(s)	465
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	5 cut(s)	295, 349, 791, 931, 1045
Alw21I	GWGCWC	2 cut(s)	509, 745
Alw26I	GTCTC	2 cut(s)	66, 989
Alw44I	GTGCAC	1 cut(s)	741
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	998
Aor51HI	AGCGCT	1 cut(s)	465
AoxI	GGCC	1 cut(s)	1086
ApaLI	GTGCAC	1 cut(s)	741
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	770, 802
AseI	ATTAAT	1 cut(s)	1098
AspLEI	GCGC	2 cut(s)	466, 823
AspS9I	GGNCC	1 cut(s)	1086
AsuII	TTCGAA	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	745
Bbv12I	GWGCWC	2 cut(s)	509, 745
BbvCI	CCTCAGC	1 cut(s)	827
BccI	CCATC	5 cut(s)	43, 196, 200, 764, 839
BcoDI	GTCTC	2 cut(s)	66, 989
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	2 cut(s)	534, 666
BfoI	RGCGCY	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	440
BglI	GCCNNNNNGGC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	1086
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	6 cut(s)	205, 258, 292, 707, 840, 1101
BmuI	ACTGGG	1 cut(s)	550
Bpu10I	CCTNAGC	3 cut(s)	513, 827, 881
Bpu14I	TTCGAA	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaJI	CCNNGG	2 cut(s)	233, 894
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	556, 960, 1003
Bse3DI	GCAATG	2 cut(s)	474, 585
Bse8I	GATNNNNATC	1 cut(s)	1065
BseDI	CCNNGG	2 cut(s)	233, 894
BseGI	GGATG	6 cut(s)	37, 211, 273, 283, 722, 876
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	2 cut(s)	474, 585
BseMII	CTCAG	2 cut(s)	841, 934
BseNI	ACTGG	3 cut(s)	556, 960, 1003
BseRI	GAGGAG	1 cut(s)	776
BseSI	GKGCMC	1 cut(s)	745
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	1088
BsiHKAI	GWGCWC	2 cut(s)	509, 745
BslFI	GGGAC	1 cut(s)	1051
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	66, 989
BsmFI	GGGAC	1 cut(s)	1051
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	1088
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	509, 745
Bsp143I	GATC	5 cut(s)	139, 360, 600, 710, 863
Bsp19I	CCATGG	1 cut(s)	233
BspACI	CCGC	2 cut(s)	394, 479
BspANI	GGCC	1 cut(s)	1088
BspCNI	CTCAG	2 cut(s)	840, 933
BspMAI	CTGCAG	2 cut(s)	538, 670
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	474, 585
BsrI	ACTGG	3 cut(s)	556, 960, 1003
BssECI	CCNNGG	2 cut(s)	233, 894
BssMI	GATC	5 cut(s)	139, 360, 600, 710, 863
BssT1I	CCWWGG	2 cut(s)	233, 894
Bst4CI	ACNGT	1 cut(s)	859
BstAPI	GCANNNNNTGC	2 cut(s)	467, 569
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	468, 938, 966
BstDEI	CTNAG	4 cut(s)	513, 827, 881, 920
BstDSI	CCRYGG	1 cut(s)	233
BstF5I	GGATG	6 cut(s)	37, 211, 273, 283, 722, 876
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	2 cut(s)	466, 823
BstKTI	GATC	5 cut(s)	142, 363, 603, 713, 866
BstMAI	GTCTC	2 cut(s)	66, 989
BstMBI	GATC	5 cut(s)	139, 360, 600, 710, 863
BstNSI	RCATGY	3 cut(s)	358, 964, 968
BstSFI	CTRYAG	2 cut(s)	534, 666
BstSLI	GKGCMC	1 cut(s)	745
BsuRI	GGCC	1 cut(s)	1088
BtgI	CCRYGG	1 cut(s)	233
BtsCI	GGATG	6 cut(s)	37, 211, 273, 283, 722, 876
BtsI	GCAGTG	3 cut(s)	507, 613, 892
BtsIMutI	CAGTG	5 cut(s)	507, 563, 613, 873, 892
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	3 cut(s)	468, 938, 966
CaiI	CAGNNNCTG	1 cut(s)	998
CfoI	GCGC	2 cut(s)	466, 823
Cfr13I	GGNCC	1 cut(s)	1086
Csp6I	GTAC	3 cut(s)	86, 853, 1002
CviQI	GTAC	3 cut(s)	86, 853, 1002
DdeI	CTNAG	4 cut(s)	513, 827, 881, 920
DpnI	GATC	5 cut(s)	141, 362, 602, 712, 865
DpnII	GATC	5 cut(s)	139, 360, 600, 710, 863
EciI	GGCGGA	1 cut(s)	409
Eco130I	CCWWGG	2 cut(s)	233, 894
Eco32I	GATATC	1 cut(s)	649
Eco47III	AGCGCT	1 cut(s)	465
Eco57I	CTGAAG	3 cut(s)	395, 444, 1127
EcoRV	GATATC	1 cut(s)	649
EcoT14I	CCWWGG	2 cut(s)	233, 894
EcoT22I	ATGCAT	2 cut(s)	285, 966
ErhI	CCWWGG	2 cut(s)	233, 894
FaqI	GGGAC	1 cut(s)	1051
FauNDI	CATATG	1 cut(s)	1104
FokI	GGATG	6 cut(s)	24, 218, 270, 280, 729, 863
FspAI	RTGCGCAY	1 cut(s)	822
FspBI	CTAG	1 cut(s)	125
FspI	TGCGCA	1 cut(s)	822
GlaI	GCGC	2 cut(s)	465, 822
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	1 cut(s)	1088
HhaI	GCGC	2 cut(s)	466, 823
Hin6I	GCGC	2 cut(s)	464, 821
HinP1I	GCGC	2 cut(s)	464, 821
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	3 cut(s)	5, 172, 983
Hpy166II	GTNNAC	3 cut(s)	743, 778, 855
Hpy188I	TCNGA	3 cut(s)	314, 863, 988
Hpy188III	TCNNGA	7 cut(s)	41, 287, 349, 364, 492, 714, 1021
Hpy8I	GTNNAC	3 cut(s)	743, 778, 855
HpyAV	CCTTC	3 cut(s)	370, 512, 586
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	2 cut(s)	182, 1072
HpyF3I	CTNAG	4 cut(s)	513, 827, 881, 920
HpySE526I	ACGT	2 cut(s)	182, 1072
HspAI	GCGC	2 cut(s)	464, 821
Kzo9I	GATC	5 cut(s)	139, 360, 600, 710, 863
LmnI	GCTCC	3 cut(s)	521, 584, 689
LweI	GCATC	6 cut(s)	205, 258, 292, 707, 840, 1101
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	2 cut(s)	182, 1072
MaeIII	GTNAC	1 cut(s)	1073
MalI	GATC	5 cut(s)	141, 362, 602, 712, 865
MboI	GATC	5 cut(s)	139, 360, 600, 710, 863
MboII	GAAGA	3 cut(s)	346, 1070, 1133
MhlI	GDGCHC	2 cut(s)	509, 745
MluCI	AATT	4 cut(s)	10, 76, 144, 290
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	7 cut(s)	25, 394, 668, 754, 766, 836, 982
Mph1103I	ATGCAT	2 cut(s)	285, 966
MseI	TTAA	7 cut(s)	134, 384, 653, 683, 702, 906, 1098
MslI	CAYNNNNRTG	2 cut(s)	262, 738
MspA1I	CMGCKG	3 cut(s)	539, 665, 671
Mva1269I	GAATGC	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	233
NdeI	CATATG	1 cut(s)	1104
NdeII	GATC	5 cut(s)	139, 360, 600, 710, 863
NsbI	TGCGCA	1 cut(s)	822
NsiI	ATGCAT	2 cut(s)	285, 966
NspI	RCATGY	3 cut(s)	358, 964, 968
NspV	TTCGAA	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	968
PaqCI	CACCTGC	1 cut(s)	440
PciI	ACATGT	1 cut(s)	354
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	5, 983
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PscI	ACATGT	1 cut(s)	354
PshBI	ATTAAT	1 cut(s)	1098
Psp1406I	AACGTT	1 cut(s)	1072
PspPI	GGNCC	1 cut(s)	1086
PstI	CTGCAG	2 cut(s)	538, 670
PstNI	CAGNNNCTG	1 cut(s)	998
PvuII	CAGCTG	3 cut(s)	539, 665, 671
RsaI	GTAC	3 cut(s)	87, 854, 1003
RsaNI	GTAC	3 cut(s)	86, 853, 1002
RseI	CAYNNNNRTG	2 cut(s)	262, 738
SaqAI	TTAA	7 cut(s)	134, 384, 653, 683, 702, 906, 1098
Sau3AI	GATC	5 cut(s)	139, 360, 600, 710, 863
Sau96I	GGNCC	1 cut(s)	1086
SchI	GAGTC	1 cut(s)	166
SduI	GDGCHC	2 cut(s)	509, 745
SfaNI	GCATC	6 cut(s)	205, 258, 292, 707, 840, 1101
SfcI	CTRYAG	2 cut(s)	534, 666
SfuI	TTCGAA	1 cut(s)	8
SmiMI	CAYNNNNRTG	2 cut(s)	262, 738
SphI	GCATGC	1 cut(s)	968
Sse9I	AATT	4 cut(s)	10, 76, 144, 290
SsiI	CCGC	2 cut(s)	394, 479
SspMI	CTAG	1 cut(s)	125
StyI	CCWWGG	2 cut(s)	233, 894
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	2 cut(s)	185, 1075
TaqI	TCGA	5 cut(s)	8, 359, 759, 783, 834
TasI	AATT	4 cut(s)	10, 76, 144, 290
TatI	WGTACW	2 cut(s)	85, 852
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	5, 983
Tru1I	TTAA	7 cut(s)	134, 384, 653, 683, 702, 906, 1098
Tru9I	TTAA	7 cut(s)	134, 384, 653, 683, 702, 906, 1098
TscAI	CASTG	5 cut(s)	514, 563, 613, 873, 892
TspDTI	ATGAA	1 cut(s)	1113
TspGWI	ACGGA	2 cut(s)	44, 862
TspRI	CASTG	5 cut(s)	514, 563, 613, 873, 892
VneI	GTGCAC	1 cut(s)	741
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	3 cut(s)	358, 964, 968
XspI	CTAG	1 cut(s)	125
Zsp2I	ATGCAT	2 cut(s)	285, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.