Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Forward (+)

31960637 .. 31963235

Gene Structure 2599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1260700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGATTCACATTTCACTACTCCAACTCCTTCGGAGTCGCATCCTGAGACAATGGATTTTCTTTCCCTTGCATGGTGCAACTTTGCAGTGCAAGCTTTTCAACCAGACCAACAAGATCGATCCGTGGTTCTACTTGACGATCCAATTGTGAAGTTTGAGAGCCACAACAAGAGTCCTTACGCTAAGCTACACAAGATGGATGATGCAGATCTCAAGCCTCCACCTTGGAAATACAATGACGTGAAGTCGTTTATATGGACGCAACAAGCCATGCATCCAGAATTGAACTACAACGGCTTTTTACGGAAGAAATGGATGTCATGGAAGATGGTGCCATTTAAGAATATGTCGATCAAGAAATGGCTTAAAGACATTAAGCGAAGGCGGAAAGAGGAGCACAGGCTGCAAAGAGCTGAAGTCCATGCAGCAATATCAATGGCGGGTGTAGCAGCTGCCCTTGCTGCTATTGCAGCTGAAAAATCAGAAAATGATGAGTCAAGCACTGCCAAGGAAGCTGCAGTCGCTTCTGCAGCCGCTCTAGTGGCGGCCCAGTGTGCAAAAGTTGCAGAAGCAATGGGGGCAAGGAAGGAGCAACTCAGCAGTGTAATAGGTTCAGCCATGAATAGCACAAGTGCAAGTGACATCTTAACTCTATCAGCGGCAGCTACAACATCATTGAAGGGAGCAGCGACATTGAAAGAAAGAACAGGATGCTGCAACAAAAGACTAAATGGAACTGCACCTGTGATGCCTGCCGAGGATAACCCTGAGGAGGTTGATTTCGACTTTGAGAAGTATAGATCAATGCTTGCAACAGGTGCCCAGCTCACCACTGAAACACCAGACGGGAAGTACACGGTTAGATGGGTGTCTGTCATCATCAACAATGAAGCCAAGGTTCTTGTTCAAATGAGGAAGCTCGGTCTGTTGAAAAGAAAGAAGGAATGTATCATACTGGACATGCATGCGGAGCTGTATAAAGATTCAGAAGCCGGTGAGAATGGTACAGGTTATCTCATCGTGTTAACGACGAGTAAGGGGACAATCAAGCTGGACATGGAAGCCGACTATCAGCGGTACAAGACATGGGCGACGACCATTAACCATATGCTCTTGGTCTCTACTTCGTTTACGAAATATCATCTTCAATACTACAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

388

Amino Acids

43.34

Weight (kDa)

8.71

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	12 - 254	5.1e-69	Auxin canalisation
PH_2	PF08458	276 - 373	1.8e-20	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	331, 818
AccBSI	CCGCTC	1 cut(s)	536
AciI	CCGC	7 cut(s)	385, 440, 534, 545, 659, 968, 1075
AclWI	GGATC	2 cut(s)	114, 134
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	3 cut(s)	854, 1006, 1079
AfiI	CCNNNNNNNGG	2 cut(s)	72, 772
AgsI	TTSAA	7 cut(s)	101, 286, 679, 697, 908, 931, 1148
AhdI	GACNNNNNGTC	1 cut(s)	244
AjiI	CACGTC	1 cut(s)	241
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	2 cut(s)	41, 1123
AlwI	GGATC	2 cut(s)	114, 134
AoxI	GGCC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	820, 1007
AxyI	CCTNAGG	1 cut(s)	768
BaeGI	GKGCMC	1 cut(s)	823
BanI	GGYRCC	2 cut(s)	331, 818
Bbv12I	GWGCWC	1 cut(s)	399
BccI	CCATC	3 cut(s)	190, 322, 858
BceAI	ACGGC	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	41, 1123
BfaI	CTAG	2 cut(s)	539, 1162
BfmI	CTRYAG	2 cut(s)	516, 528
BglII	AGATCT	1 cut(s)	208
BlpI	GCTNAGC	1 cut(s)	183
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	2 cut(s)	333, 820
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	5 cut(s)	49, 193, 283, 701, 738
BmuI	ACTGGG	1 cut(s)	544
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	1123
BsaJI	CCNNGG	5 cut(s)	123, 224, 507, 756, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 772
Bse118I	RCCGGY	1 cut(s)	992
Bse1I	ACTGG	2 cut(s)	550, 960
Bse21I	CCTNAGG	1 cut(s)	768
Bse3DI	GCAATG	1 cut(s)	579
Bse8I	GATNNNNATC	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	118
BseDI	CCNNGG	5 cut(s)	123, 224, 507, 756, 894
BseGI	GGATG	5 cut(s)	40, 205, 274, 321, 716
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	72, 772
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	3 cut(s)	36, 610, 759
BseNI	ACTGG	2 cut(s)	550, 960
BseRI	GAGGAG	2 cut(s)	407, 785
BseSI	GKGCMC	1 cut(s)	823
BseYI	CCCAGC	1 cut(s)	822
BsgI	GTGCAG	1 cut(s)	723
BshFI	GGCC	1 cut(s)	548
BshNI	GGYRCC	2 cut(s)	331, 818
BshVI	ATCGAT	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	993
BslFI	GGGAC	1 cut(s)	1054
BslI	CCNNNNNNNGG	2 cut(s)	72, 772
BsmAI	GTCTC	2 cut(s)	41, 1123
BsmFI	GGGAC	1 cut(s)	1054
BsnI	GGCC	1 cut(s)	548
Bso31I	GGTCTC	1 cut(s)	1123
Bsp1286I	GDGCHC	2 cut(s)	399, 823
Bsp143I	GATC	6 cut(s)	115, 119, 139, 208, 351, 800
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	7 cut(s)	385, 440, 534, 545, 659, 968, 1075
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	3 cut(s)	37, 609, 760
BspDI	ATCGAT	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	333, 820
BspMAI	CTGCAG	2 cut(s)	520, 532
BspPI	GGATC	2 cut(s)	114, 134
BspT107I	GGYRCC	2 cut(s)	331, 818
BspTNI	GGTCTC	1 cut(s)	1123
BsrBI	CCGCTC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	992
BsrI	ACTGG	2 cut(s)	550, 960
BssAI	RCCGGY	1 cut(s)	992
BssECI	CCNNGG	5 cut(s)	123, 224, 507, 756, 894
BssMI	GATC	6 cut(s)	115, 119, 139, 208, 351, 800
BssT1I	CCWWGG	3 cut(s)	224, 507, 894
Bst4CI	ACNGT	1 cut(s)	859
BstAPI	GCANNNNNTGC	3 cut(s)	403, 563, 818
BstC8I	GCNNGC	4 cut(s)	93, 753, 810, 966
BstDEI	CTNAG	4 cut(s)	45, 183, 596, 768
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	5 cut(s)	40, 205, 274, 321, 716
BstKTI	GATC	6 cut(s)	118, 122, 142, 211, 354, 803
BstMAI	GTCTC	2 cut(s)	41, 1123
BstMBI	GATC	6 cut(s)	115, 119, 139, 208, 351, 800
BstNSI	RCATGY	2 cut(s)	964, 968
BstSFI	CTRYAG	2 cut(s)	516, 528
BstSLI	GKGCMC	1 cut(s)	823
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	768
BsuRI	GGCC	1 cut(s)	548
BsuTUI	ATCGAT	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	5 cut(s)	40, 205, 274, 321, 716
BtsI	GCAGTG	3 cut(s)	93, 501, 607
BtsIMutI	CAGTG	5 cut(s)	93, 501, 557, 607, 831
Cac8I	GCNNGC	4 cut(s)	93, 753, 810, 966
Cfr10I	RCCGGY	1 cut(s)	992
Cfr13I	GGNCC	1 cut(s)	547
ClaI	ATCGAT	1 cut(s)	118
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	3 cut(s)	853, 1005, 1078
CviAII	CATG	9 cut(s)	72, 271, 321, 422, 619, 961, 965, 1057, 1086
CviQI	GTAC	3 cut(s)	853, 1005, 1078
DdeI	CTNAG	4 cut(s)	45, 183, 596, 768
DpnI	GATC	6 cut(s)	117, 121, 141, 210, 353, 802
DpnII	GATC	6 cut(s)	115, 119, 139, 208, 351, 800
DriI	GACNNNNNGTC	1 cut(s)	244
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EciI	GGCGGA	1 cut(s)	400
Eco130I	CCWWGG	3 cut(s)	224, 507, 894
Eco31I	GGTCTC	1 cut(s)	1123
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	768
EcoT14I	CCWWGG	3 cut(s)	224, 507, 894
EcoT22I	ATGCAT	2 cut(s)	276, 966
ErhI	CCWWGG	3 cut(s)	224, 507, 894
FaeI	CATG	9 cut(s)	75, 274, 324, 425, 622, 964, 968, 1060, 1089
FaqI	GGGAC	1 cut(s)	1054
FatI	CATG	9 cut(s)	71, 270, 320, 421, 618, 960, 964, 1056, 1085
FauI	CCCGC	1 cut(s)	433
FauNDI	CATATG	1 cut(s)	1107
FokI	GGATG	5 cut(s)	27, 212, 261, 328, 723
FspBI	CTAG	2 cut(s)	539, 1162
GsaI	CCCAGC	1 cut(s)	826
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	1 cut(s)	993
HgaI	GACGC	1 cut(s)	268
Hin1II	CATG	9 cut(s)	75, 274, 324, 425, 622, 964, 968, 1060, 1089
HincII	GTYRAC	1 cut(s)	1026
HindII	GTYRAC	1 cut(s)	1026
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	5 cut(s)	5, 35, 172, 494, 983
HpaI	GTTAAC	1 cut(s)	1026
HpaII	CCGG	1 cut(s)	993
HphI	GGTGA	2 cut(s)	820, 1007
Hpy166II	GTNNAC	3 cut(s)	855, 1026, 1131
Hpy188I	TCNGA	3 cut(s)	34, 484, 988
Hpy188III	TCNNGA	3 cut(s)	44, 278, 355
Hpy8I	GTNNAC	3 cut(s)	855, 1026, 1131
Hpy99I	CGWCG	2 cut(s)	1033, 1096
HpyAV	CCTTC	5 cut(s)	39, 375, 580, 673, 934
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	1 cut(s)	240
HpyF3I	CTNAG	4 cut(s)	45, 183, 596, 768
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	9 cut(s)	75, 274, 324, 425, 622, 964, 968, 1060, 1089
KspAI	GTTAAC	1 cut(s)	1026
Kzo9I	GATC	6 cut(s)	115, 119, 139, 208, 351, 800
LmnI	GCTCC	4 cut(s)	394, 589, 683, 970
LweI	GCATC	5 cut(s)	49, 193, 283, 701, 738
MaeI	CTAG	2 cut(s)	539, 1162
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	638
MalI	GATC	6 cut(s)	117, 121, 141, 210, 353, 802
MbiI	CCGCTC	1 cut(s)	536
MboI	GATC	6 cut(s)	115, 119, 139, 208, 351, 800
MboII	GAAGA	3 cut(s)	319, 337, 1136
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	399, 823
MluCI	AATT	2 cut(s)	144, 281
MlyI	GAGTC	3 cut(s)	44, 181, 503
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	6 cut(s)	228, 385, 751, 763, 766, 906
Mph1103I	ATGCAT	2 cut(s)	276, 966
MseI	TTAA	6 cut(s)	339, 366, 375, 647, 1025, 1101
MspA1I	CMGCKG	4 cut(s)	452, 473, 659, 1075
MspI	CCGG	1 cut(s)	993
MunI	CAATTG	1 cut(s)	144
NdeI	CATATG	1 cut(s)	1107
NdeII	GATC	6 cut(s)	115, 119, 139, 208, 351, 800
NlaIII	CATG	9 cut(s)	75, 274, 324, 425, 622, 964, 968, 1060, 1089
NlaIV	GGNNCC	2 cut(s)	333, 820
NmeAIII	GCCGAG	1 cut(s)	781
NmuCI	GTSAC	1 cut(s)	638
NsiI	ATGCAT	2 cut(s)	276, 966
NspI	RCATGY	2 cut(s)	964, 968
PaeI	GCATGC	1 cut(s)	968
PfeI	GAWTC	2 cut(s)	5, 983
PleI	GAGTC	3 cut(s)	43, 180, 502
PpsI	GAGTC	3 cut(s)	43, 180, 502
PspFI	CCCAGC	1 cut(s)	822
PspN4I	GGNNCC	2 cut(s)	333, 820
PspPI	GGNCC	1 cut(s)	547
PstI	CTGCAG	2 cut(s)	520, 532
PsuI	RGATCY	1 cut(s)	208
PvuII	CAGCTG	2 cut(s)	452, 473
RsaI	GTAC	3 cut(s)	854, 1006, 1079
RsaNI	GTAC	3 cut(s)	853, 1005, 1078
SaqAI	TTAA	6 cut(s)	339, 366, 375, 647, 1025, 1101
Sau3AI	GATC	6 cut(s)	115, 119, 139, 208, 351, 800
Sau96I	GGNCC	1 cut(s)	547
SchI	GAGTC	3 cut(s)	44, 181, 503
SduI	GDGCHC	2 cut(s)	399, 823
SfaNI	GCATC	5 cut(s)	49, 193, 283, 701, 738
SfcI	CTRYAG	2 cut(s)	516, 528
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SphI	GCATGC	1 cut(s)	968
Sse9I	AATT	2 cut(s)	144, 281
SsiI	CCGC	7 cut(s)	385, 440, 534, 545, 659, 968, 1075
SspMI	CTAG	2 cut(s)	539, 1162
StyI	CCWWGG	3 cut(s)	224, 507, 894
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	118, 350, 783
TaqII	GACCGA	1 cut(s)	911
TasI	AATT	2 cut(s)	144, 281
TatI	WGTACW	1 cut(s)	852
TauI	GCSGC	3 cut(s)	536, 548, 662
TfiI	GAWTC	2 cut(s)	5, 983
Tru1I	TTAA	6 cut(s)	339, 366, 375, 647, 1025, 1101
Tru9I	TTAA	6 cut(s)	339, 366, 375, 647, 1025, 1101
TscAI	CASTG	5 cut(s)	93, 508, 557, 607, 838
TseFI	GTSAC	1 cut(s)	638
Tsp45I	GTSAC	1 cut(s)	638
TspDTI	ATGAA	2 cut(s)	635, 903
TspGWI	ACGGA	2 cut(s)	112, 319
TspRI	CASTG	5 cut(s)	93, 508, 557, 607, 838
XceI	RCATGY	2 cut(s)	964, 968
XspI	CTAG	2 cut(s)	539, 1162
Zsp2I	ATGCAT	2 cut(s)	276, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.