Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Forward (+)

32820153 .. 32822499

Gene Structure 2347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1262400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCATGGAAGATAGTGCCATTTAAGAACATGTCGATCAAGAAATGGCATAAAGACATTAAGCAAAGGCGGAAAGAGGAGCAGAGGCTGCAAAGAGCTGAAGTCCATGCAGCAGTATCATCGATGGCGGGTGTAGCGGCTGCACTTGCTGCTATTGCAGCTGAAAAATCAGAAAATGATGGGTCAAGCACTGCCAAGGAAGCTGACGTTGCTTCTGCAGCCGCGCTGGTGGTGGCCCAGTGTGCAAAAGTTGCAGAAGCAATGGGGGCAAGGAAGGAGCAGCTCAGCAGCGTAATAGGATGCTGCAAGAAGAGACTAAATGGGACTGCACCTGTGATGCCTATCGAGGACAACCCTGTCGCTGAGGAGGTCGATTTCGACGTTGACAAGTATAGATCAATGCTTGCAATAGGTTCCCAGCTCACCACTGAAACACCTGACGAAACTAATCATTTTAGCAAGTGGAATCTGTATTTCCATCATTCCGGCGAACATACCATTTCTTTGTATTGTAAGTACAAGGTTAGATCGGTGTCTGCCATCCTCAACAGTGAAGCCAAGGTCCTTCAAATGAGGAAGCTCAGTCTATTCAAAAACACGAAGGAAAGTATCATACTGGACATGTACGCAGAGCTGTATAAAGAGTCAGAAGCGGGTGAGAATGGTACGGGTTATCGCATTTTTTTAACGACAAGTAGGGGGGCATTCAAGCTAGACATGGAAGCCGACTATCAACGGTACAAGACATGGGCGACAACCATTAACCATATGCTCATGGTCTCTACTTCATTTATGAAATATCATCTTCAATACTACATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

275

Amino Acids

30.88

Weight (kDa)

8.84

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	8 - 100	8.5e-30	Auxin canalisation
PH_2	PF08458	172 - 261	2.2e-13	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AccII	CGCG	1 cut(s)	224
AciI	CCGC	5 cut(s)	70, 128, 137, 222, 653
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	4 cut(s)	518, 626, 667, 740
AflIII	ACRYGT	2 cut(s)	30, 621
AgsI	TTSAA	4 cut(s)	569, 592, 709, 809
AluBI	AGCT	8 cut(s)	98, 161, 203, 283, 421, 580, 634, 712
AluI	AGCT	8 cut(s)	98, 161, 203, 283, 421, 580, 634, 712
Alw26I	GTCTC	2 cut(s)	307, 784
AlwNI	CAGNNNCTG	1 cut(s)	88
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	9 cut(s)	88, 110, 140, 149, 158, 218, 280, 288, 303
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	235, 562
AsuHPI	GGTGA	2 cut(s)	415, 668
AvaII	GGWCC	1 cut(s)	562
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	9 cut(s)	75, 122, 127, 136, 170, 230, 290, 292, 300
BccI	CCATC	4 cut(s)	118, 173, 486, 548
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BcoDI	GTCTC	2 cut(s)	307, 784
BfaI	CTAG	2 cut(s)	713, 823
BfmI	CTRYAG	1 cut(s)	216
BlpI	GCTNAGC	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	2 cut(s)	235, 562
BmiI	GGNNCC	1 cut(s)	415
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	290, 327
BmuI	ACTGGG	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	195, 558
Bse1I	ACTGG	2 cut(s)	238, 621
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	341
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	195, 558
BseGI	GGATG	2 cut(s)	305, 540
BseJI	GATNNNNATC	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	3 cut(s)	298, 354, 595
BseNI	ACTGG	2 cut(s)	238, 621
BseRI	GAGGAG	2 cut(s)	92, 380
BseXI	GCAGC	9 cut(s)	75, 122, 127, 136, 170, 230, 290, 292, 300
BseYI	CCCAGC	1 cut(s)	417
BsgI	GTGCAG	2 cut(s)	126, 312
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	307, 784
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	1 cut(s)	236
Bso31I	GGTCTC	1 cut(s)	784
Bsp143I	GATC	3 cut(s)	36, 395, 527
Bsp1720I	GCTNAGC	1 cut(s)	284
BspACI	CCGC	5 cut(s)	70, 128, 137, 222, 653
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	3 cut(s)	297, 355, 594
BspDI	ATCGAT	1 cut(s)	122
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	784
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	238, 621
BssECI	CCNNGG	2 cut(s)	195, 558
BssMI	GATC	3 cut(s)	36, 395, 527
BssT1I	CCWWGG	2 cut(s)	195, 558
Bst4CI	ACNGT	2 cut(s)	551, 738
Bst6I	CTCTTC	1 cut(s)	305
BstAPI	GCANNNNNTGC	3 cut(s)	88, 149, 251
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	3 cut(s)	284, 363, 581
BstF5I	GGATG	2 cut(s)	305, 540
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	3 cut(s)	39, 398, 530
BstMAI	GTCTC	2 cut(s)	307, 784
BstMBI	GATC	3 cut(s)	36, 395, 527
BstNSI	RCATGY	2 cut(s)	34, 625
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	9 cut(s)	75, 122, 127, 136, 170, 230, 290, 292, 300
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	236
BsuTUI	ATCGAT	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	305, 540
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	4 cut(s)	189, 245, 426, 556
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	88
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	235, 562
ClaI	ATCGAT	1 cut(s)	122
Csp6I	GTAC	4 cut(s)	517, 625, 666, 739
CviAII	CATG	8 cut(s)	6, 31, 107, 622, 718, 747, 775, 817
CviQI	GTAC	4 cut(s)	517, 625, 666, 739
DdeI	CTNAG	3 cut(s)	284, 363, 581
DpnI	GATC	3 cut(s)	38, 397, 529
DpnII	GATC	3 cut(s)	36, 395, 527
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	195, 558
Eco31I	GGTCTC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	562
EcoT14I	CCWWGG	2 cut(s)	195, 558
ErhI	CCWWGG	2 cut(s)	195, 558
FaeI	CATG	8 cut(s)	9, 34, 110, 625, 721, 750, 778, 820
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	8 cut(s)	5, 30, 106, 621, 717, 746, 774, 816
FauI	CCCGC	2 cut(s)	121, 646
FauNDI	CATATG	1 cut(s)	768
FokI	GGATG	2 cut(s)	312, 527
FspBI	CTAG	2 cut(s)	713, 823
GlaI	GCGC	1 cut(s)	225
GsaI	CCCAGC	1 cut(s)	421
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	1 cut(s)	486
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	8 cut(s)	9, 34, 110, 625, 721, 750, 778, 820
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	2 cut(s)	466, 644
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	2 cut(s)	415, 668
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	2 cut(s)	172, 649
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	3 cut(s)	268, 575, 595
HpyCH4III	ACNGT	2 cut(s)	551, 738
HpyCH4IV	ACGT	2 cut(s)	207, 381
HpyF3I	CTNAG	3 cut(s)	284, 363, 581
HpySE526I	ACGT	2 cut(s)	207, 381
Hsp92II	CATG	8 cut(s)	9, 34, 110, 625, 721, 750, 778, 820
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	3 cut(s)	36, 395, 527
LmnI	GCTCC	2 cut(s)	79, 277
LpnPI	CCDG	8 cut(s)	212, 251, 345, 369, 431, 450, 499, 602
Lsp1109I	GCAGC	9 cut(s)	75, 122, 127, 136, 170, 230, 290, 292, 300
LweI	GCATC	2 cut(s)	290, 327
MaeI	CTAG	2 cut(s)	713, 823
MaeII	ACGT	2 cut(s)	207, 381
MalI	GATC	3 cut(s)	38, 397, 529
MboI	GATC	3 cut(s)	36, 395, 527
MboII	GAAGA	3 cut(s)	22, 322, 797
MlyI	GAGTC	1 cut(s)	653
MnlI	CCTC	7 cut(s)	70, 78, 340, 358, 361, 554, 567
MseI	TTAA	4 cut(s)	24, 60, 686, 762
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	704
MvnI	CGCG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	768
NdeII	GATC	3 cut(s)	36, 395, 527
NlaIII	CATG	8 cut(s)	9, 34, 110, 625, 721, 750, 778, 820
NlaIV	GGNNCC	1 cut(s)	415
NspI	RCATGY	2 cut(s)	34, 625
PciI	ACATGT	2 cut(s)	30, 621
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PctI	GAATGC	1 cut(s)	704
PfeI	GAWTC	1 cut(s)	466
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
PpuMI	RGGWCCY	1 cut(s)	562
PscI	ACATGT	2 cut(s)	30, 621
Psp5II	RGGWCCY	1 cut(s)	562
PspFI	CCCAGC	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	2 cut(s)	235, 562
PspPPI	RGGWCCY	1 cut(s)	562
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	4 cut(s)	518, 626, 667, 740
RsaNI	GTAC	4 cut(s)	517, 625, 666, 739
SaqAI	TTAA	4 cut(s)	24, 60, 686, 762
Sau3AI	GATC	3 cut(s)	36, 395, 527
Sau96I	GGNCC	2 cut(s)	235, 562
SchI	GAGTC	1 cut(s)	653
SfaNI	GCATC	2 cut(s)	290, 327
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	562
SsiI	CCGC	5 cut(s)	70, 128, 137, 222, 653
SspMI	CTAG	2 cut(s)	713, 823
StyI	CCWWGG	2 cut(s)	195, 558
TaaI	ACNGT	2 cut(s)	551, 738
TaiI	ACGT	2 cut(s)	210, 384
TaqI	TCGA	5 cut(s)	35, 122, 345, 372, 378
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	2 cut(s)	140, 224
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	4 cut(s)	24, 60, 686, 762
Tru9I	TTAA	4 cut(s)	24, 60, 686, 762
TscAI	CASTG	4 cut(s)	196, 245, 433, 556
TseI	GCWGC	9 cut(s)	88, 110, 140, 149, 158, 218, 280, 288, 303
TspDTI	ATGAA	2 cut(s)	777, 809
TspRI	CASTG	4 cut(s)	196, 245, 433, 556
VpaK11BI	GGWCC	1 cut(s)	562
XceI	RCATGY	2 cut(s)	34, 625
XspI	CTAG	2 cut(s)	713, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.