Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0016443

Physical Location & Seq

Genomic Coordinates Forward (+)

73032347 .. 73035038

Gene Structure 2692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCCTAATCTGCCCTTTTTCACCTTAGAGTTGTTGCCTTCCTGGAGGTCCCAGTTCTCTACACCTACTTATTATTTGTTCCCTTCTGTTCATTGGCTTCAACTGCAAGTAGCTCGTGAGGAATATGATGAGGAAGCTACATTGTGTGTTTTCCGGTTGAAGTCCCTGAAGCAAGGGCAAGCCCGAAGTATTCTAACACAAGCAGCTCGCCACCATGCTGCTCAGTTGAACTTCTTTCGGAAAGGACTCAAGTCACTTGAGGCTATCGAGCCACATGTTAGGTTGGTTACAGAAGAGGAAGGTGATGAGAGTGTTCGCAGGGTTCAGATGATGTGGAAGGTGATGAGAGTGGTTATGCAACCGGGAGTCAGAATGAGAACCCCGGTGTCAATCCCAAATCTTCAGGAAACTCGAAAAATGGTAGAATCCATCTCCCTTGATGAACCTGCAAGGTTATTACTTGGGGATGCACACAATGCATATGTAATGAGAACTAAAGTAAGGCGAATTTATGATATTGCAAATGTTTCGTCCTCCATGAATCTTATTGAAAAGACCCACGCAGTAGATACAAGGAAGCCTGCATATAAATGGTTGGGATTGAGAGGAAAAGATGCTACGAGTTCAGCTTCAGACGAGCCTAGAAAAAGAGCCTTTGGAACAGATATCACAAACGTTAAACAAAAGCAACATGAGAGCATAGTACGTAAGGTTGATAAGAACAATTCAGAGGACTCGAAAGAAAATACAAAGAGCTACCAGTTTGGCCCTTTTGCCCCAGTTACTATTGCTAGAGCTGGGAATTTCAACATGAAGAAGGCTGACTGGGACAATTTGTCCTCTATGTACTTACCGTCCCTAGCTTATATATATGGACGCAAGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

296

Amino Acids

34.12

Weight (kDa)

9.81

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	142 - 200	1.3e-09	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118381 RchiOBHm_Chr5g0036461 RchiOBHm_Chr5g0067381 RchiOBHm_Chr6g0305371 RchiOBHm_Chr7g0214071
rosa_laevigata	RLG00000034614
rosa_roxburghii	Rroxscaffold_4G00316410
rosa_rugosa	Rorug03G0188300.1 Rorug04G0050200 Rorug04G0050300 Rorug05G0296500
rosa_samantha	Rh1AG221600 Rh3AG267500
rosa_wichuraiana	Rw3G025160 Rw5G041480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
AclI	AACGTT	1 cut(s)	675
AcsI	RAATTY	2 cut(s)	507, 802
AcuI	CTGAAG	3 cut(s)	188, 386, 615
AfaI	GTAC	2 cut(s)	705, 848
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	5 cut(s)	101, 160, 229, 551, 808
AhdI	GACNNNNNGTC	1 cut(s)	835
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	7 cut(s)	113, 137, 206, 629, 756, 797, 863
AluI	AGCT	7 cut(s)	113, 137, 206, 629, 756, 797, 863
AoxI	GGCC	1 cut(s)	766
ApeKI	GCWGC	2 cut(s)	203, 218
ApoI	RAATTY	2 cut(s)	507, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspS9I	GGNCC	2 cut(s)	48, 767
AsuC2I	CCSGG	2 cut(s)	363, 383
AsuHPI	GGTGA	3 cut(s)	13, 314, 352
AvaII	GGWCC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	205, 215
BccI	CCATC	1 cut(s)	437
BcgI	CGANNNNNNTGC	4 cut(s)	95, 129, 510, 544
BciT130I	CCWGG	1 cut(s)	43
BcnI	CCSGG	2 cut(s)	363, 383
BfaI	CTAG	3 cut(s)	642, 792, 860
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	204, 219
BlsI	GCNGC	2 cut(s)	205, 220
Bme1390I	CCNGG	3 cut(s)	43, 363, 383
Bme18I	GGWCC	1 cut(s)	48
BmeRI	GACNNNNNGTC	1 cut(s)	835
BmgT120I	GGNCC	2 cut(s)	48, 767
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	3 cut(s)	43, 363, 383
BmrI	ACTGGG	3 cut(s)	46, 773, 835
BmsI	GCATC	2 cut(s)	457, 604
BmuI	ACTGGG	3 cut(s)	46, 773, 835
BoxI	GACNNNNGTC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	64
BpuEI	CTTGAG	2 cut(s)	233, 278
BpuMI	CCSGG	2 cut(s)	363, 383
BsaAI	YACGTR	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	153
Bse1I	ACTGG	4 cut(s)	52, 760, 779, 830
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	472
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	4 cut(s)	52, 760, 779, 830
BseXI	GCAGC	2 cut(s)	205, 215
BseYI	CCCAGC	1 cut(s)	797
BshFI	GGCC	1 cut(s)	768
BsiSI	CCGG	3 cut(s)	154, 362, 383
BslFI	GGGAC	4 cut(s)	34, 148, 841, 842
BsmFI	GGGAC	4 cut(s)	34, 148, 841, 842
BsnI	GGCC	1 cut(s)	768
BspANI	GGCC	1 cut(s)	768
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	50
BspMI	ACCTGC	1 cut(s)	454
BsrI	ACTGG	4 cut(s)	52, 760, 779, 830
BssECI	CCNNGG	1 cut(s)	381
BssSI	CACGAG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	855
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstBAI	YACGTR	1 cut(s)	707
BstC8I	GCNNGC	3 cut(s)	180, 208, 582
BstDEI	CTNAG	2 cut(s)	25, 222
BstF5I	GGATG	1 cut(s)	472
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 103, 476
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	278
BstPAI	GACNNNNGTC	1 cut(s)	250
BstSCI	CCNGG	3 cut(s)	41, 361, 381
BstSNI	TACGTA	1 cut(s)	707
BstV1I	GCAGC	2 cut(s)	205, 215
BsuRI	GGCC	1 cut(s)	768
BtsCI	GGATG	1 cut(s)	472
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	3 cut(s)	180, 208, 582
Cfr13I	GGNCC	2 cut(s)	48, 767
CseI	GACGC	1 cut(s)	885
Csp6I	GTAC	2 cut(s)	704, 847
CviAII	CATG	5 cut(s)	215, 275, 538, 692, 811
CviQI	GTAC	2 cut(s)	704, 847
DdeI	CTNAG	2 cut(s)	25, 222
DriI	GACNNNNNGTC	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	288
Eco105I	TACGTA	1 cut(s)	707
Eco32I	GATATC	1 cut(s)	667
Eco47I	GGWCC	1 cut(s)	48
Eco57I	CTGAAG	3 cut(s)	188, 386, 615
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	667
EcoT22I	ATGCAT	1 cut(s)	481
FaeI	CATG	5 cut(s)	218, 278, 541, 695, 814
FaqI	GGGAC	4 cut(s)	34, 148, 841, 842
FatI	CATG	5 cut(s)	214, 274, 537, 691, 810
FauNDI	CATATG	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	204, 219
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	2 cut(s)	204, 219
FspBI	CTAG	3 cut(s)	642, 792, 860
GluI	GCNGC	2 cut(s)	204, 219
GsaI	CCCAGC	1 cut(s)	801
GsuI	CTGGAG	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	768
HapII	CCGG	3 cut(s)	154, 362, 383
HgaI	GACGC	1 cut(s)	885
Hin1II	CATG	5 cut(s)	218, 278, 541, 695, 814
HinfI	GANTC	5 cut(s)	246, 366, 425, 541, 734
HpaII	CCGG	3 cut(s)	154, 362, 383
HphI	GGTGA	3 cut(s)	13, 314, 352
Hpy188I	TCNGA	5 cut(s)	240, 327, 371, 634, 730
Hpy188III	TCNNGA	2 cut(s)	116, 404
HpyAV	CCTTC	5 cut(s)	48, 93, 293, 331, 811
HpyCH4III	ACNGT	1 cut(s)	855
HpyCH4IV	ACGT	2 cut(s)	675, 706
HpyCH4V	TGCA	7 cut(s)	106, 358, 449, 470, 479, 521, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 103, 476
HpyF3I	CTNAG	2 cut(s)	25, 222
HpySE526I	ACGT	2 cut(s)	675, 706
Hsp92II	CATG	5 cut(s)	218, 278, 541, 695, 814
Lsp1109I	GCAGC	2 cut(s)	205, 215
LweI	GCATC	2 cut(s)	457, 604
MaeI	CTAG	3 cut(s)	642, 792, 860
MaeII	ACGT	2 cut(s)	675, 706
MaeIII	GTNAC	3 cut(s)	252, 286, 781
MboII	GAAGA	3 cut(s)	305, 392, 826
MluCI	AATT	4 cut(s)	507, 724, 802, 832
MlyI	GAGTC	3 cut(s)	240, 375, 728
MnlI	CCTC	9 cut(s)	39, 112, 124, 253, 289, 544, 599, 724, 850
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	1 cut(s)	678
MslI	CAYNNNNRTG	1 cut(s)	589
MspI	CCGG	3 cut(s)	154, 362, 383
MspR9I	CCNGG	3 cut(s)	43, 363, 383
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	10, 103, 476
NciI	CCSGG	2 cut(s)	363, 383
NdeI	CATATG	1 cut(s)	481
NlaIII	CATG	5 cut(s)	218, 278, 541, 695, 814
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	1 cut(s)	278
PciI	ACATGT	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	425, 541
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	205, 220
PleI	GAGTC	3 cut(s)	240, 374, 728
PpsI	GAGTC	3 cut(s)	240, 374, 728
Ppu21I	YACGTR	1 cut(s)	707
PpuMI	RGGWCCY	1 cut(s)	48
PscI	ACATGT	1 cut(s)	274
PshAI	GACNNNNGTC	1 cut(s)	250
Psp1406I	AACGTT	1 cut(s)	675
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	2 cut(s)	48, 767
PspPPI	RGGWCCY	1 cut(s)	48
RsaI	GTAC	2 cut(s)	705, 848
RsaNI	GTAC	2 cut(s)	704, 847
RseI	CAYNNNNRTG	1 cut(s)	589
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	2 cut(s)	204, 219
Sau96I	GGNCC	2 cut(s)	48, 767
SchI	GAGTC	3 cut(s)	240, 375, 728
ScrFI	CCNGG	3 cut(s)	43, 363, 383
SfaNI	GCATC	2 cut(s)	457, 604
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	589
SmlI	CTYRAG	2 cut(s)	248, 257
SmoI	CTYRAG	2 cut(s)	248, 257
SnaBI	TACGTA	1 cut(s)	707
Sse9I	AATT	4 cut(s)	507, 724, 802, 832
SspMI	CTAG	3 cut(s)	642, 792, 860
StyD4I	CCNGG	3 cut(s)	41, 361, 381
TaaI	ACNGT	1 cut(s)	855
TaiI	ACGT	2 cut(s)	678, 709
TaqI	TCGA	3 cut(s)	267, 412, 737
TasI	AATT	4 cut(s)	507, 724, 802, 832
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	2 cut(s)	425, 541
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	2 cut(s)	203, 218
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	4 cut(s)	80, 456, 554, 827
VpaK11BI	GGWCC	1 cut(s)	48
XapI	RAATTY	2 cut(s)	507, 802
XceI	RCATGY	1 cut(s)	278
XspI	CTAG	3 cut(s)	642, 792, 860
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.