Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016443

Physical Location & Seq

Genomic Coordinates Reverse (-)

41254820 .. 41259619

Gene Structure 4800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATGAGGAAGGTGATGAGAGTGGTCATGCAACCAGGAGTCAGAATGAGAACCCCGGTGTCAATCCCAAATCATCAGGAAACTCAACAAATGGTAGAATCCATCTCCCTTGATGAAGCTGCAAGGTTATTACCTGGGGATGCAGACAATGCATCTGTAATGAGAACAGCTAAAGTAAGGCGGATTTATGATATTGCAAATGTTTCGTCCTCCATGAATCTTATTGAAAAGACCCATGCAGTAGATACAAGGAAGCCTGCATATAAATGGTTGGGATTGAGAGGAAAAGATGCTACGAGTTCAGCTTCAGACGAGTCTAGAAAAAGAGCCTTTGGAACAGATATCACAAACGTTGTAAGAGGGGCAAAGCAGAATCTTCTATTGCTGGGAAATTGGAAGCTCAGAAACAAAAGCAACATGAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

142

Amino Acids

15.98

Weight (kDa)

10.75

Isoelectric Point (pI)

30.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	32 - 92	1.4e-10	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118381 RchiOBHm_Chr5g0036461 RchiOBHm_Chr5g0067381 RchiOBHm_Chr6g0305371 RchiOBHm_Chr7g0214071
rosa_laevigata	RLG00000034614
rosa_roxburghii	Rroxscaffold_4G00316410
rosa_rugosa	Rorug03G0188300.1 Rorug04G0050200 Rorug04G0050300 Rorug05G0296500
rosa_samantha	Rh1AG221600 Rh3AG267500
rosa_wichuraiana	Rw3G025160 Rw5G041480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	181
AclI	AACGTT	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	34, 133
AluBI	AGCT	4 cut(s)	119, 170, 305, 400
AluI	AGCT	4 cut(s)	119, 170, 305, 400
ApeKI	GCWGC	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	2 cut(s)	36, 135
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	3 cut(s)	36, 56, 135
BmrFI	CCNGG	3 cut(s)	36, 56, 135
BmsI	GCATC	3 cut(s)	130, 161, 280
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	54, 134
BseBI	CCWGG	2 cut(s)	36, 135
BseDI	CCNNGG	2 cut(s)	54, 134
BseGI	GGATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	56
BspACI	CCGC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	54, 134
Bst2UI	CCWGG	2 cut(s)	36, 135
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	2 cut(s)	36, 135
BstSCI	CCNGG	3 cut(s)	34, 54, 133
BstV1I	GCAGC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	258
CviAII	CATG	4 cut(s)	28, 214, 236, 418
CviJI	RGCY	6 cut(s)	119, 170, 256, 305, 329, 400
CviKI_1	RGCY	6 cut(s)	119, 170, 256, 305, 329, 400
DdeI	CTNAG	1 cut(s)	401
EciI	GGCGGA	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	34, 133
EcoRV	GATATC	1 cut(s)	343
EcoT22I	ATGCAT	1 cut(s)	154
FaeI	CATG	4 cut(s)	31, 217, 239, 421
FaiI	YATR	8 cut(s)	29, 189, 215, 237, 262, 264, 419, 427
FatI	CATG	4 cut(s)	27, 213, 235, 417
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	1 cut(s)	120
GsaI	CCCAGC	1 cut(s)	389
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	4 cut(s)	31, 217, 239, 421
HinfI	GANTC	5 cut(s)	39, 98, 217, 314, 373
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	44, 310, 404
Hpy188III	TCNNGA	2 cut(s)	77, 318
HpyAV	CCTTC	1 cut(s)	4
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	7 cut(s)	31, 122, 143, 152, 197, 239, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	401
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	4 cut(s)	31, 217, 239, 421
LpnPI	CCDG	8 cut(s)	21, 48, 62, 69, 120, 147, 270, 371
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	3 cut(s)	130, 161, 280
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	351
MboII	GAAGA	1 cut(s)	368
MluCI	AATT	1 cut(s)	391
MlyI	GAGTC	2 cut(s)	48, 323
MnlI	CCTC	3 cut(s)	220, 275, 353
Mph1103I	ATGCAT	1 cut(s)	154
MslI	CAYNNNNRTG	1 cut(s)	265
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	3 cut(s)	36, 56, 135
MvaI	CCWGG	2 cut(s)	36, 135
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	56
NlaIII	CATG	4 cut(s)	31, 217, 239, 421
NsiI	ATGCAT	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	98, 217, 373
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	47, 322
PpsI	GAGTC	2 cut(s)	47, 322
Psp1406I	AACGTT	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	34, 133
PspFI	CCCAGC	1 cut(s)	385
PspGI	CCWGG	2 cut(s)	34, 133
RseI	CAYNNNNRTG	1 cut(s)	265
SatI	GCNGC	1 cut(s)	120
SchI	GAGTC	2 cut(s)	48, 323
ScrFI	CCNGG	3 cut(s)	36, 56, 135
SetI	ASST	8 cut(s)	15, 121, 128, 136, 172, 307, 354, 402
SfaNI	GCATC	3 cut(s)	130, 161, 280
SmiMI	CAYNNNNRTG	1 cut(s)	265
Sse9I	AATT	1 cut(s)	391
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	3 cut(s)	34, 54, 133
TaiI	ACGT	1 cut(s)	354
TasI	AATT	1 cut(s)	391
TfiI	GAWTC	3 cut(s)	98, 217, 373
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	129, 230
XbaI	TCTAGA	1 cut(s)	317
XspI	CTAG	1 cut(s)	318
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.