Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016443

Physical Location & Seq

Genomic Coordinates Forward (+)

30660384 .. 30665817

Gene Structure 5434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31527

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATTCTTATTGAAAAGACCCACGCAGCAGATACAAGGAAGCCTGCATATAAATGGTTGGGATTGAGAGGAAAAGATGCTACGAGTTCAGCTTCAGACGAGTCTAGAAAAAGAGCCTTTGGAACAGATATCACAAACGTTGTAAGAGGGGCGGCAAAATCTTCTACTGCTGGGAAATTGGAAGCTCAGAAACAAAAGCAACATGAGAGTATAGTACGGCAACGTGAGAGCATAGTACGTAAGGTTGATAGGAACAATTCAGAGGACTCGAAAGAAAATACAAAGAGCTACCAGTTTGGCCCTTTTGCCCTAGTTACTATTGCCAGAGCTGGGAATTTCAACATGAAGAAGGTTGACTGGGACAATTTGTCCTCTACGTACTTATCGTCCCTAGTATCAGAATCAAGGTATCATCAACTTATGCTTCAGCCTGATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

146

Amino Acids

16.42

Weight (kDa)

9.8

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118381 RchiOBHm_Chr5g0036461 RchiOBHm_Chr5g0067381 RchiOBHm_Chr6g0305371 RchiOBHm_Chr7g0214071
rosa_laevigata	RLG00000034614
rosa_roxburghii	Rroxscaffold_4G00316410
rosa_rugosa	Rorug03G0188300.1 Rorug04G0050200 Rorug04G0050300 Rorug05G0296500
rosa_samantha	Rh1AG221600 Rh3AG267500
rosa_wichuraiana	Rw3G025160 Rw5G041480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AclI	AACGTT	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	78, 410
AfaI	GTAC	3 cut(s)	216, 237, 380
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	2 cut(s)	14, 340
AhdI	GACNNNNNGTC	1 cut(s)	367
AluBI	AGCT	4 cut(s)	92, 185, 288, 329
AluI	AGCT	4 cut(s)	92, 185, 288, 329
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	233
BfaI	CTAG	3 cut(s)	105, 311, 392
BisI	GCNGC	2 cut(s)	27, 153
BlsI	GCNGC	2 cut(s)	28, 154
BmeRI	GACNNNNNGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	67
BmuI	ACTGGG	1 cut(s)	367
BsaAI	YACGTR	2 cut(s)	239, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	2 cut(s)	292, 362
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	292, 362
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	2 cut(s)	170, 329
BshFI	GGCC	1 cut(s)	300
BslFI	GGGAC	2 cut(s)	373, 374
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmFI	GGGAC	2 cut(s)	373, 374
BsnI	GGCC	1 cut(s)	300
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	292, 362
BstBAI	YACGTR	2 cut(s)	239, 378
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	186
BstSNI	TACGTA	2 cut(s)	239, 378
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	3 cut(s)	215, 236, 379
CviAII	CATG	2 cut(s)	203, 343
CviJI	RGCY	8 cut(s)	43, 92, 116, 185, 288, 300, 329, 430
CviKI_1	RGCY	8 cut(s)	43, 92, 116, 185, 288, 300, 329, 430
CviQI	GTAC	3 cut(s)	215, 236, 379
DdeI	CTNAG	1 cut(s)	186
DriI	GACNNNNNGTC	1 cut(s)	367
Eam1105I	GACNNNNNGTC	1 cut(s)	367
Eco105I	TACGTA	2 cut(s)	239, 378
Eco32I	GATATC	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	78, 410
EcoRV	GATATC	1 cut(s)	130
FaeI	CATG	2 cut(s)	206, 346
FaiI	YATR	7 cut(s)	49, 51, 204, 212, 233, 344, 422
FaqI	GGGAC	2 cut(s)	373, 374
FatI	CATG	2 cut(s)	202, 342
Fnu4HI	GCNGC	2 cut(s)	27, 153
Fsp4HI	GCNGC	2 cut(s)	27, 153
FspBI	CTAG	3 cut(s)	105, 311, 392
GluI	GCNGC	2 cut(s)	27, 153
GsaI	CCCAGC	2 cut(s)	174, 333
HaeIII	GGCC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	206, 346
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	4 cut(s)	4, 101, 266, 401
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	4 cut(s)	97, 189, 262, 400
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	1 cut(s)	343
HpyCH4IV	ACGT	4 cut(s)	138, 223, 238, 377
HpyCH4V	TGCA	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	4 cut(s)	138, 223, 238, 377
Hsp92II	CATG	2 cut(s)	206, 346
LpnPI	CCDG	6 cut(s)	57, 156, 305, 315, 337, 343
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	3 cut(s)	105, 311, 392
MaeII	ACGT	4 cut(s)	138, 223, 238, 377
MaeIII	GTNAC	1 cut(s)	313
MboII	GAAGA	2 cut(s)	153, 358
MluCI	AATT	4 cut(s)	176, 256, 334, 364
MlyI	GAGTC	2 cut(s)	110, 260
MnlI	CCTC	4 cut(s)	62, 140, 256, 382
MslI	CAYNNNNRTG	1 cut(s)	52
NlaIII	CATG	2 cut(s)	206, 346
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	4, 401
PkrI	GCNGC	2 cut(s)	28, 154
PleI	GAGTC	2 cut(s)	109, 260
PpsI	GAGTC	2 cut(s)	109, 260
Ppu21I	YACGTR	2 cut(s)	239, 378
Psp1406I	AACGTT	1 cut(s)	138
PspFI	CCCAGC	2 cut(s)	170, 329
PspPI	GGNCC	1 cut(s)	299
RsaI	GTAC	3 cut(s)	216, 237, 380
RsaNI	GTAC	3 cut(s)	215, 236, 379
RseI	CAYNNNNRTG	1 cut(s)	52
SatI	GCNGC	2 cut(s)	27, 153
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	2 cut(s)	110, 260
SfaNI	GCATC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	52
SnaBI	TACGTA	2 cut(s)	239, 378
Sse9I	AATT	4 cut(s)	176, 256, 334, 364
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	3 cut(s)	105, 311, 392
TaiI	ACGT	4 cut(s)	141, 226, 241, 380
TaqI	TCGA	1 cut(s)	269
TasI	AATT	4 cut(s)	176, 256, 334, 364
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	4, 401
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	359
XapI	RAATTY	1 cut(s)	334
XbaI	TCTAGA	1 cut(s)	104
XspI	CTAG	3 cut(s)	105, 311, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.