Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019786

Physical Location & Seq

Genomic Coordinates Reverse (-)

85091234 .. 85091614

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGTGCATGAATAAAAAACAGATAGCGATAGGTAGACTAAAATATGCAACACAGATTCCGGACCCCCAAACCCCAAACGCGGAGTTCCACTCCTCCGAGGCCTACTTTGGCAACGGCTTCACCCGCCGGGTCAATCTCCTAAAGCCCACTAAAGATTCCGGCAGCTGGTTCCGGTGTGCGTTCCACGAGACCCTGAGGAGCTCGGTGTGCGAGGGACGGAGGATCCGGATGGTGCCGAAAAGGGTGAAGATGCCGATTGGCGGCGAAGTTTTGGAGGATGTGATTGGGAGAGGGGAGGAGGAGGAGGAGTTGCCTGACTTTCGAAACGGTGCGTTTGAGTTTCGAAACGGTGCGTTTGGAAGTTTATTGAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

126

Amino Acids

14.35

Weight (kDa)

9.36

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019786)

Species	Orthologous Gene IDs
malus_domestica	MD11G1206800.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079391
rosa_multiflora	Rmu_sc0015520.1_g000001 Rmu_sc0025026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003150
rosa_rugosa	Rorug05G0467800
rosa_samantha	Rh5AG521200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	37
AccII	CGCG	1 cut(s)	83
AccIII	TCCGGA	2 cut(s)	61, 228
AciI	CCGC	3 cut(s)	83, 127, 264
AclWI	GGATC	2 cut(s)	220, 233
AfiI	CCNNNNNNNGG	3 cut(s)	82, 168, 263
AluBI	AGCT	2 cut(s)	168, 204
AluI	AGCT	2 cut(s)	168, 204
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	220, 233
Aor13HI	TCCGGA	2 cut(s)	61, 228
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	115, 259
AsuII	TTCGAA	2 cut(s)	325, 346
AvaII	GGWCC	1 cut(s)	64
AxyI	CCTNAGG	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	206
BauI	CACGAG	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	166, 265
BlsI	GCNGC	2 cut(s)	167, 266
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	4 cut(s)	66, 173, 227, 237
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
Bpu14I	TTCGAA	2 cut(s)	325, 346
BpuMI	CCSGG	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	3 cut(s)	61, 174, 228
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 168, 263
Bse21I	CCTNAGG	1 cut(s)	197
BseAI	TCCGGA	2 cut(s)	61, 228
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	237, 286
BseLI	CCNNNNNNNGG	3 cut(s)	82, 168, 263
BseMII	CTCAG	1 cut(s)	188
BseRI	GAGGAG	6 cut(s)	85, 214, 314, 317, 320, 323
BseXI	GCAGC	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	206
BsiSI	CCGG	5 cut(s)	62, 130, 162, 175, 229
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	82, 168, 263
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	104
Bso31I	GGTCTC	1 cut(s)	185
Bsp119I	TTCGAA	2 cut(s)	325, 346
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp13I	TCCGGA	2 cut(s)	61, 228
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	3 cut(s)	83, 127, 264
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	189
BspEI	TCCGGA	2 cut(s)	61, 228
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	4 cut(s)	66, 173, 227, 237
BspPI	GGATC	2 cut(s)	220, 233
BspT104I	TTCGAA	2 cut(s)	325, 346
BspT107I	GGYRCC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	225
BssSI	CACGAG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	332, 353
BstBI	TTCGAA	2 cut(s)	325, 346
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	237, 286
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 210
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
Bsu36I	CCTNAGG	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	237, 286
Cfr13I	GGNCC	1 cut(s)	64
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	5 cut(s)	104, 120, 148, 168, 204
CviKI_1	RGCY	5 cut(s)	104, 120, 148, 168, 204
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	204
Eco81I	CCTNAGG	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	206
FaeI	CATG	1 cut(s)	13
FaiI	YATR	2 cut(s)	11, 48
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	134
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	166, 265
FokI	GGATG	2 cut(s)	244, 293
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	166, 265
GluI	GCNGC	2 cut(s)	166, 265
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	5 cut(s)	62, 130, 162, 175, 229
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	2 cut(s)	58, 158
HpaII	CCGG	5 cut(s)	62, 130, 162, 175, 229
HphI	GGTGA	2 cut(s)	115, 259
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	2 cut(s)	62, 229
Hpy8I	GTNNAC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	332, 353
HpyCH4V	TGCA	2 cut(s)	9, 50
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 210
HpyF3I	CTNAG	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	13
Kpn2I	TCCGGA	2 cut(s)	61, 228
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	8 cut(s)	75, 143, 154, 175, 188, 209, 242, 330
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	1 cut(s)	243
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	1 cut(s)	262
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	206
MroI	TCCGGA	2 cut(s)	61, 228
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	5 cut(s)	62, 130, 162, 175, 229
MspR9I	CCNGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	126, 210
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	4 cut(s)	66, 173, 227, 237
NspV	TTCGAA	2 cut(s)	325, 346
PceI	AGGCCT	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	58, 158
PkrI	GCNGC	2 cut(s)	167, 266
Psp124BI	GAGCTC	1 cut(s)	206
PspN4I	GGNNCC	4 cut(s)	66, 173, 227, 237
PspPI	GGNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	168
SacI	GAGCTC	1 cut(s)	206
SatI	GCNGC	2 cut(s)	166, 265
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	3 cut(s)	37, 170, 206
SfaNI	GCATC	1 cut(s)	243
SfuI	TTCGAA	2 cut(s)	325, 346
SinI	GGWCC	1 cut(s)	64
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	3 cut(s)	83, 127, 264
SstI	GAGCTC	1 cut(s)	206
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	332, 353
TaqI	TCGA	2 cut(s)	325, 346
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	58, 158
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	2 cut(s)	17, 26
TspGWI	ACGGA	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.