Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017639

Physical Location & Seq

Genomic Coordinates Reverse (-)

88739651 .. 88741756

Gene Structure 2106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGAGCATGGGAGCCTCAGATTCTTCTACAAGCTCCCAATCCCTAATTGAACATCAACAACAAGAACTAGAATCACAGCCTCAAATCACCACCAAGAATCCCAAAAAACTTGCCCTTATCCCACTAGTTTTCCTTATCTATTTTGAGGTCTCTGGAGGTCCTTATGGTGAAGAACCAGCAGTTGGTGCAGCTGGTCCACTCTTTGCCATTCTTGGCTTCCTCATCTTCCCATTCATTTGGAGCATCCCTGAGGCCCTTGTCACCGCTGAGCTGGCCACCGCCTTCCCCGGAAATGGTGGTTTTGTCATCTGGGCACACCAGGCCTTTGGACCCTTCTGGGGCTCCCTAATGGGATCTTGGAAATTCCTCAGTGGAGTCATCAATTTAGCTTCATATCCTATTCTTTGTGTTGACTATCTCAAGCTGGTAATCCCAATTTTCTCTTCAGGCCTTCCTCGATTTTTTGCAATATTTTTATCTACTGTAGTGCTCTCATGTTTGAATTATTCTGGTTTGAGTATTGTTGGTTACACTGCAGTAGGTTTAGGAATATTGTCACTGTGTCCATTTATAGTAATGTCTTTGGTTGCAATTCCCAAGATTGATCCTAGCAGATGGATCAGTTTGGGACAAAAGGGTGTGGAAAAAGATTGGACTTTGTATATAAACACCTTATTCTGGAACTTAAATTTTTGGGACAATGCCAGTACATTAGCTGGTGAAGTTGAACAACCCCAAAAGATGTACCCAAAAGCACTTTTTTCAGCTGGCATTCTCACATGTTTGGGGTACATAGTTCCTCTCCTAGCTGCAACTGGTGCTATTCCACTTGAACAAGAAGATTGGGTTGATGGGTATTTTGCTTCAGCTGGAGAAGTGATTGCTGGGAAGTGGTTGAAATACTGGATCGAAATTGGTGCTGTTTTATCAATCATTGGACTGTTTGAAGCTCAGTTAAGTAGCTGTGCATACCAGCTTTTGGGCATGGCAGACTTGGGGATTTCACCGGTAATTTTTGGGTCACGGTCTAAATGGTTCAACACACCTTGGTTAGGAATTCTCATTTCAACAGTTTTCGCACTATCGGTTTCTTACTTGGATTTCGCAGACATTATATCTTCTGCTAATTTCCTGTACAGTTTGGGAATGCTATTAGAGTTTGCATCTTTTCTTTGGTTGAGAGTGAAGTTTCCAGGTCTAGGAAGGCCATTTAAAGTTCCAATGGACATGAGAGGGTTGATCGTCATGTGTTTGATTCCATCAGGGTTTTTGGTCTATGTTCTGGCTGTGGCTACCAAAGCTGTTTATTTGGTTAGTGCATTGATGACTCTGTTTGGAATTGTTTGGTACTTTTTTATGAATCTCTGCAAATCAAAGATGTGGTTTGAATTTAACAAGGGTGAACAAAAATTGGAAATACGAGGACATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

477

Amino Acids

52.52

Weight (kDa)

5.42

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	59 - 453	1.2e-32	Amino acid permease
AA_permease	PF00324	60 - 436	1.9e-10	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45281
malus_domestica	MD11G1009900.v1.1
prunus_persica	Prupe.6G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0082951
rosa_laevigata	RLG00000037004
rosa_multiflora	Rmu_sc0017035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001470
rosa_rugosa	Rorug05G0481600
rosa_samantha	Rh5BG558200 Rh5CG581100 Rh5DG567000
rosa_wichuraiana	Rw5G049740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	182, 979
AciI	CCGC	2 cut(s)	264, 279
AclWI	GGATC	4 cut(s)	361, 599, 626, 914
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	4 cut(s)	362, 688, 1056, 1388
AcuI	CTGAAG	2 cut(s)	429, 849
AfaI	GTAC	5 cut(s)	709, 746, 791, 1136, 1349
AfiI	CCNNNNNNNGG	7 cut(s)	182, 293, 338, 678, 979, 1052, 1199
AflIII	ACRYGT	1 cut(s)	779
AgeI	ACCGGT	1 cut(s)	1006
AgsI	TTSAA	9 cut(s)	50, 502, 728, 833, 898, 947, 1039, 1068, 1388
AhlI	ACTAGT	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	318, 1192
AjuI	GAANNNNNNNTTGG	4 cut(s)	165, 197, 427, 459
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	4 cut(s)	361, 599, 626, 914
AoxI	GGCC	5 cut(s)	252, 273, 321, 448, 1205
ApeKI	GCWGC	2 cut(s)	188, 809
ApoI	RAATTY	4 cut(s)	362, 688, 1056, 1388
AsiGI	ACCGGT	1 cut(s)	1006
AspS9I	GGNCC	4 cut(s)	158, 194, 253, 329
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	6 cut(s)	79, 179, 253, 731, 996, 1412
AvaII	GGWCC	3 cut(s)	158, 194, 329
AxyI	CCTNAGG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	200, 796
BccI	CCATC	3 cut(s)	609, 845, 1267
BcgI	CGANNNNNNTGC	2 cut(s)	899, 933
BciT130I	CCWGG	2 cut(s)	320, 1194
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	154
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	5 cut(s)	68, 125, 609, 806, 1199
BfmI	CTRYAG	2 cut(s)	483, 534
BisI	GCNGC	2 cut(s)	189, 810
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	2 cut(s)	190, 811
Bme1390I	CCNGG	3 cut(s)	288, 320, 1194
Bme18I	GGWCC	3 cut(s)	158, 194, 329
BmgT120I	GGNCC	4 cut(s)	158, 194, 253, 329
BmiI	GGNNCC	3 cut(s)	13, 331, 343
BmrFI	CCNGG	3 cut(s)	288, 320, 1194
BmsI	GCATC	2 cut(s)	252, 1172
BpmI	CTGGAG	2 cut(s)	174, 891
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	286, 1046
BsaWI	WCCGGW	1 cut(s)	1006
Bsc4I	CCNNNNNNNGG	7 cut(s)	182, 293, 338, 678, 979, 1052, 1199
Bse118I	RCCGGY	1 cut(s)	1006
Bse1I	ACTGG	3 cut(s)	705, 820, 908
Bse21I	CCTNAGG	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	320, 1194
BseDI	CCNNGG	2 cut(s)	286, 1046
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	7 cut(s)	182, 293, 338, 678, 979, 1052, 1199
BseMII	CTCAG	5 cut(s)	30, 240, 258, 382, 965
BseNI	ACTGG	3 cut(s)	705, 820, 908
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	200, 796
BseYI	CCCAGC	1 cut(s)	884
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	5 cut(s)	254, 275, 323, 450, 1207
BshTI	ACCGGT	1 cut(s)	1006
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	2 cut(s)	288, 1007
BslFI	GGGAC	2 cut(s)	642, 710
BslI	CCNNNNNNNGG	7 cut(s)	182, 293, 338, 678, 979, 1052, 1199
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	2 cut(s)	642, 710
BsmI	GAATGC	2 cut(s)	771, 1152
BsnI	GGCC	5 cut(s)	254, 275, 323, 450, 1207
Bso31I	GGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	3 cut(s)	316, 344, 492
Bsp1407I	TGTACA	1 cut(s)	1134
Bsp143I	GATC	5 cut(s)	353, 604, 618, 906, 1239
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	264, 279
BspANI	GGCC	5 cut(s)	254, 275, 323, 450, 1207
BspCNI	CTCAG	5 cut(s)	29, 241, 259, 381, 964
BspLI	GGNNCC	3 cut(s)	13, 331, 343
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	4 cut(s)	361, 599, 626, 914
BspTNI	GGTCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	1006
BsrGI	TGTACA	1 cut(s)	1134
BsrI	ACTGG	3 cut(s)	705, 820, 908
BssAI	RCCGGY	1 cut(s)	1006
BssECI	CCNNGG	2 cut(s)	286, 1046
BssMI	GATC	5 cut(s)	353, 604, 618, 906, 1239
BssT1I	CCWWGG	1 cut(s)	1046
Bst2UI	CCWGG	2 cut(s)	320, 1194
Bst4CI	ACNGT	6 cut(s)	484, 561, 942, 1026, 1072, 1139
Bst6I	CTCTTC	1 cut(s)	448
BstAPI	GCANNNNNTGC	2 cut(s)	185, 818
BstAUI	TGTACA	1 cut(s)	1134
BstC8I	GCNNGC	2 cut(s)	273, 769
BstDEI	CTNAG	5 cut(s)	16, 249, 267, 368, 951
BstENI	CCTNNNNNAGG	1 cut(s)	1050
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	5 cut(s)	356, 607, 621, 909, 1242
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	5 cut(s)	353, 604, 618, 906, 1239
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 272, 320, 818, 1298
BstNI	CCWGG	2 cut(s)	320, 1194
BstNSI	RCATGY	1 cut(s)	783
BstSCI	CCNGG	3 cut(s)	286, 318, 1192
BstSFI	CTRYAG	2 cut(s)	483, 534
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	200, 796
BstX2I	RGATCY	1 cut(s)	353
BstXI	CCANNNNNNTGG	2 cut(s)	237, 326
BstYI	RGATCY	1 cut(s)	353
Bsu36I	CCTNAGG	1 cut(s)	249
BsuRI	GGCC	5 cut(s)	254, 275, 323, 450, 1207
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	376, 531, 557
Cac8I	GCNNGC	2 cut(s)	273, 769
Cfr10I	RCCGGY	1 cut(s)	1006
Cfr13I	GGNCC	4 cut(s)	158, 194, 253, 329
Csp6I	GTAC	5 cut(s)	708, 745, 790, 1135, 1348
CspAI	ACCGGT	1 cut(s)	1006
CviAII	CATG	7 cut(s)	7, 495, 780, 985, 1228, 1246, 1427
CviQI	GTAC	5 cut(s)	708, 745, 790, 1135, 1348
DdeI	CTNAG	5 cut(s)	16, 249, 267, 368, 951
DpnI	GATC	5 cut(s)	355, 606, 620, 908, 1241
DpnII	GATC	5 cut(s)	353, 604, 618, 906, 1239
DraI	TTTAAA	1 cut(s)	1213
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	1046
Eco147I	AGGCCT	2 cut(s)	323, 450
Eco24I	GRGCYC	1 cut(s)	344
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	3 cut(s)	158, 194, 329
Eco57I	CTGAAG	2 cut(s)	429, 849
Eco81I	CCTNAGG	1 cut(s)	249
EcoNI	CCTNNNNNAGG	1 cut(s)	1050
EcoO109I	RGGNCCY	2 cut(s)	158, 253
EcoRI	GAATTC	1 cut(s)	1056
EcoRII	CCWGG	2 cut(s)	318, 1192
EcoT14I	CCWWGG	1 cut(s)	1046
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	1046
FaeI	CATG	7 cut(s)	10, 498, 783, 988, 1231, 1249, 1430
FaqI	GGGAC	2 cut(s)	642, 710
FatI	CATG	7 cut(s)	6, 494, 779, 984, 1227, 1245, 1426
Fnu4HI	GCNGC	2 cut(s)	189, 810
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	189, 810
FspBI	CTAG	5 cut(s)	68, 125, 609, 806, 1199
GluI	GCNGC	2 cut(s)	189, 810
GsaI	CCCAGC	1 cut(s)	888
GsuI	CTGGAG	2 cut(s)	174, 891
HaeIII	GGCC	5 cut(s)	254, 275, 323, 450, 1207
HapII	CCGG	2 cut(s)	288, 1007
Hin1II	CATG	7 cut(s)	10, 498, 783, 988, 1231, 1249, 1430
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	7 cut(s)	20, 71, 97, 375, 1255, 1327, 1360
HpaII	CCGG	2 cut(s)	288, 1007
HphI	GGTGA	6 cut(s)	79, 179, 253, 731, 996, 1412
Hpy166II	GTNNAC	3 cut(s)	197, 412, 1403
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	153, 679
Hpy8I	GTNNAC	3 cut(s)	197, 412, 1403
HpyAV	CCTTC	4 cut(s)	292, 343, 461, 1197
HpyCH4III	ACNGT	6 cut(s)	484, 561, 942, 1026, 1072, 1139
HpyCH4V	TGCA	9 cut(s)	188, 467, 536, 590, 812, 968, 1163, 1319, 1368
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 272, 320, 818, 1298
HpyF3I	CTNAG	5 cut(s)	16, 249, 267, 368, 951
Hsp92II	CATG	7 cut(s)	10, 498, 783, 988, 1231, 1249, 1430
Kzo9I	GATC	5 cut(s)	353, 604, 618, 906, 1239
LmnI	GCTCC	4 cut(s)	11, 38, 240, 347
Lsp1109I	GCAGC	2 cut(s)	200, 796
LweI	GCATC	2 cut(s)	252, 1172
MaeI	CTAG	5 cut(s)	68, 125, 609, 806, 1199
MaeIII	GTNAC	4 cut(s)	259, 527, 555, 1020
MalI	GATC	5 cut(s)	355, 606, 620, 908, 1241
MboI	GATC	5 cut(s)	353, 604, 618, 906, 1239
MboII	GAAGA	6 cut(s)	15, 182, 217, 435, 851, 1110
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	3 cut(s)	316, 344, 492
MlsI	TGGCCA	1 cut(s)	275
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	384, 1321
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	4 cut(s)	686, 956, 1212, 1392
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	4 cut(s)	191, 266, 767, 869
MspI	CCGG	2 cut(s)	288, 1007
MspR9I	CCNGG	3 cut(s)	288, 320, 1194
Mva1269I	GAATGC	2 cut(s)	771, 1152
MvaI	CCWGG	2 cut(s)	320, 1194
MwoI	GCNNNNNNNGC	5 cut(s)	185, 272, 320, 818, 1298
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	5 cut(s)	353, 604, 618, 906, 1239
NlaIII	CATG	7 cut(s)	10, 498, 783, 988, 1231, 1249, 1430
NlaIV	GGNNCC	3 cut(s)	13, 331, 343
NmuCI	GTSAC	3 cut(s)	259, 555, 1020
NspI	RCATGY	1 cut(s)	783
PceI	AGGCCT	2 cut(s)	323, 450
PciI	ACATGT	1 cut(s)	779
PctI	GAATGC	2 cut(s)	771, 1152
PfeI	GAWTC	5 cut(s)	20, 71, 97, 1255, 1360
PflMI	CCANNNNNTGG	2 cut(s)	182, 979
PinAI	ACCGGT	1 cut(s)	1006
PkrI	GCNGC	2 cut(s)	190, 811
PleI	GAGTC	2 cut(s)	383, 1321
PpsI	GAGTC	2 cut(s)	383, 1321
PpuMI	RGGWCCY	1 cut(s)	158
PscI	ACATGT	1 cut(s)	779
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	2 cut(s)	318, 1192
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	2 cut(s)	318, 1192
PspN4I	GGNNCC	3 cut(s)	13, 331, 343
PspPI	GGNCC	4 cut(s)	158, 194, 253, 329
PspPPI	RGGWCCY	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	353
PvuII	CAGCTG	3 cut(s)	191, 767, 869
RsaI	GTAC	5 cut(s)	709, 746, 791, 1136, 1349
RsaNI	GTAC	5 cut(s)	708, 745, 790, 1135, 1348
SaqAI	TTAA	4 cut(s)	686, 956, 1212, 1392
SatI	GCNGC	2 cut(s)	189, 810
Sau3AI	GATC	5 cut(s)	353, 604, 618, 906, 1239
Sau96I	GGNCC	4 cut(s)	158, 194, 253, 329
SchI	GAGTC	2 cut(s)	384, 1321
ScrFI	CCNGG	3 cut(s)	288, 320, 1194
SduI	GDGCHC	3 cut(s)	316, 344, 492
SfaNI	GCATC	2 cut(s)	252, 1172
SfcI	CTRYAG	2 cut(s)	483, 534
SinI	GGWCC	3 cut(s)	158, 194, 329
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SpeI	ACTAGT	1 cut(s)	124
SseBI	AGGCCT	2 cut(s)	323, 450
SsiI	CCGC	2 cut(s)	264, 279
SspI	AATATT	2 cut(s)	471, 552
SspMI	CTAG	5 cut(s)	68, 125, 609, 806, 1199
StuI	AGGCCT	2 cut(s)	323, 450
StyD4I	CCNGG	3 cut(s)	286, 318, 1192
StyI	CCWWGG	1 cut(s)	1046
TaaI	ACNGT	6 cut(s)	484, 561, 942, 1026, 1072, 1139
TaqI	TCGA	2 cut(s)	457, 909
TatI	WGTACW	2 cut(s)	707, 1134
TfiI	GAWTC	5 cut(s)	20, 71, 97, 1255, 1360
Tru1I	TTAA	4 cut(s)	686, 956, 1212, 1392
Tru9I	TTAA	4 cut(s)	686, 956, 1212, 1392
TscAI	CASTG	3 cut(s)	376, 538, 564
TseFI	GTSAC	3 cut(s)	259, 555, 1020
TseI	GCWGC	2 cut(s)	188, 809
Tsp45I	GTSAC	3 cut(s)	259, 555, 1020
TspDTI	ATGAA	3 cut(s)	223, 381, 1373
TspRI	CASTG	3 cut(s)	376, 538, 564
Van91I	CCANNNNNTGG	2 cut(s)	182, 979
VpaK11BI	GGWCC	3 cut(s)	158, 194, 329
XagI	CCTNNNNNAGG	1 cut(s)	1050
XapI	RAATTY	4 cut(s)	362, 688, 1056, 1388
XceI	RCATGY	1 cut(s)	783
XspI	CTAG	5 cut(s)	68, 125, 609, 806, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.