RchiOBHm_Chr4g0392641

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019224
Physical Location & Seq
Forward (+)
8184379 .. 8187873
3495 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGAAAAAGGTGTTTTACCTTGAAGCTTGTGAGTCTGGGAGTATGTTTGAGGGTTTGCTTCCAAAGAATACGAACATTTATGTTACTACAACAGCAAATTCAGAAGAGAGTAGTTATGCAACACATTGTCATGGTGATCCTCATGTTTCTAAAGAATTCGGTACTTGTTTGGAAGACTTGTATAGTATTTCCTGGATGGAGGAATTGCGACGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

72

Amino Acids

8.24

Weight (kDa)

5.22

Isoelectric Point (pI)

67.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 2 - 70 1.4e-22 Peptidase C13 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g10090 FvH4_7g25270
rosa_chinensis RchiOBHm_Chr4g0392641
rosa_rugosa Rorug06G0497100
rosa_samantha Rh2AG423500 Rh3BG092300 Rh6DG346100 Rh7DG317800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 2 cut(s) 97, 155
AfaI GTAC 1 cut(s) 163
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 97, 155
AsuHPI GGTGA 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 180
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 180
BseBI CCWGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 201
Bsp143I GATC 1 cut(s) 136
BspPI GGATC 1 cut(s) 131
BssMI GATC 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 180
BtsCI GGATG 1 cut(s) 201
Csp6I GTAC 1 cut(s) 162
CviAII CATG 2 cut(s) 131, 143
CviJI RGCY 1 cut(s) 26
CviKI_1 RGCY 1 cut(s) 26
CviQI GTAC 1 cut(s) 162
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 134, 146
FaiI YATR 6 cut(s) 44, 81, 117, 132, 144, 183
FatI CATG 2 cut(s) 130, 142
FokI GGATG 1 cut(s) 208
Hin1II CATG 2 cut(s) 134, 146
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 1 cut(s) 32
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 213
HpyCH4V TGCA 1 cut(s) 119
Hsp92II CATG 2 cut(s) 134, 146
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 3 cut(s) 21, 178, 205
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 2 cut(s) 116, 185
MluCI AATT 3 cut(s) 97, 155, 203
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 3 cut(s) 43, 150, 193
MslI CAYNNNNRTG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 134, 146
PfoI TCCNGGA 1 cut(s) 191
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 129
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 193
SetI ASST 3 cut(s) 12, 21, 28
SgeI CNNG 9 cut(s) 32, 39, 48, 143, 155, 177, 190, 204, 205
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 3 cut(s) 97, 155, 203
StyD4I CCNGG 1 cut(s) 191
TasI AATT 3 cut(s) 97, 155, 203
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 97, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.