Rh6DG346100

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0019224
Physical Location & Seq
Reverse (-)
54832902 .. 54833468
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG346100.1

Sequence Viewer

Length: 288 bp
ATGAACATTTATGCTACTACAGCAGCAAATGCAGAAGAGAATAGTTATGCAACAAATTGTTATGTTGATCCTCATGTTCCTAAAGAATTCGGTACTTGTTTGGAAGACTTGTATAGTATTTTCTGGATGGAGGAATTGGTAAACAGAGCTCAACCTGGCTCTCATGAGAAGCTCAAAAGCAGGGACTTAATGAAACTGCTCGAAGGAAACATGCATGTGGACTACAGCATAACCAAAATAGGGGAGCTTCTGTTTGGAGAAGAGCTCAAAAGTATTGATGAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

95

Amino Acids

10.85

Weight (kDa)

4.6

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 2 - 48 6.9e-10 Peptidase C13 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g10090 FvH4_7g25270
rosa_chinensis RchiOBHm_Chr4g0392641
rosa_rugosa Rorug06G0497100
rosa_samantha Rh2AG423500 Rh3BG092300 Rh6DG346100 Rh7DG317800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 240
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 4 cut(s) 149, 172, 247, 265
AluI AGCT 4 cut(s) 149, 172, 247, 265
Alw21I GWGCWC 2 cut(s) 151, 267
AlwI GGATC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 86
BanII GRGCYC 2 cut(s) 151, 267
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 2 cut(s) 151, 267
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 156
BfmI CTRYAG 2 cut(s) 18, 223
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 35
BsiHKAI GWGCWC 2 cut(s) 151, 267
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 151, 267
Bsp143I GATC 1 cut(s) 67
BspHI TCATGA 1 cut(s) 163
BspPI GGATC 1 cut(s) 62
BspQI GCTCTTC 1 cut(s) 255
BssMI GATC 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 156
Bst6I CTCTTC 2 cut(s) 30, 255
BstAPI GCANNNNNTGC 1 cut(s) 29
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 20, 29
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 2 cut(s) 214, 218
BstSCI CCNGG 1 cut(s) 154
BstSFI CTRYAG 2 cut(s) 18, 223
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 132
CciI TCATGA 1 cut(s) 163
Csp6I GTAC 1 cut(s) 93
CviAII CATG 4 cut(s) 74, 164, 211, 215
CviJI RGCY 5 cut(s) 149, 159, 172, 247, 265
CviKI_1 RGCY 5 cut(s) 149, 159, 172, 247, 265
CviQI GTAC 1 cut(s) 93
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 30, 255
EarI CTCTTC 2 cut(s) 30, 255
Ecl136II GAGCTC 2 cut(s) 149, 265
Eco24I GRGCYC 2 cut(s) 151, 267
Eco53kI GAGCTC 2 cut(s) 149, 265
EcoICRI GAGCTC 2 cut(s) 149, 265
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 216
EcoT38I GRGCYC 2 cut(s) 151, 267
FaeI CATG 4 cut(s) 77, 167, 214, 218
FaiI YATR 9 cut(s) 12, 48, 63, 75, 114, 165, 212, 216, 230
FaqI GGGAC 1 cut(s) 197
FatI CATG 4 cut(s) 73, 163, 210, 214
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 2 cut(s) 151, 267
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
Hin1II CATG 4 cut(s) 77, 167, 214, 218
Hpy166II GTNNAC 2 cut(s) 142, 220
Hpy188III TCNNGA 2 cut(s) 124, 164
Hpy8I GTNNAC 2 cut(s) 142, 220
HpyAV CCTTC 1 cut(s) 197
HpyCH4V TGCA 3 cut(s) 32, 50, 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 29
Hsp92II CATG 4 cut(s) 77, 167, 214, 218
Kzo9I GATC 1 cut(s) 67
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 4 cut(s) 109, 141, 166, 168
Lsp1109I GCAGC 1 cut(s) 35
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 3 cut(s) 47, 116, 272
MhlI GDGCHC 2 cut(s) 151, 267
MluCI AATT 3 cut(s) 55, 86, 134
MnlI CCTC 2 cut(s) 81, 124
Mph1103I ATGCAT 1 cut(s) 216
MseI TTAA 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 20, 29
NdeII GATC 1 cut(s) 67
NlaIII CATG 4 cut(s) 77, 167, 214, 218
NsiI ATGCAT 1 cut(s) 216
NspI RCATGY 2 cut(s) 214, 218
PagI TCATGA 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 255
PkrI GCNGC 1 cut(s) 25
Psp124BI GAGCTC 2 cut(s) 151, 267
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 2 cut(s) 151, 267
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 2 cut(s) 151, 267
SetI ASST 5 cut(s) 151, 157, 174, 249, 267
SfcI CTRYAG 2 cut(s) 18, 223
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 3 cut(s) 55, 86, 134
SstI GAGCTC 2 cut(s) 151, 267
StyD4I CCNGG 1 cut(s) 154
TaqI TCGA 1 cut(s) 201
TasI AATT 3 cut(s) 55, 86, 134
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 17, 206
XapI RAATTY 1 cut(s) 86
XceI RCATGY 2 cut(s) 214, 218
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.