Rh2AG423500

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019224
Physical Location & Seq
Reverse (-)
62900348 .. 62921437
21090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG423500.1

Sequence Viewer

Length: 315 bp
ATGTTTGAGGGTTTGGTTCTAAAGAATATGAACATTTATGCTACTACAGCAGCAAATGCAGAAGAGAATAGTTATGCAACAAATTGTTATGTTGATCCTCATGTTCCTAAAGAATTCGGTACTTGTTTGGAAGACTTGTATAATATTTTCTGGATGGAGGAATTGGTAAACAGAGCTCAACCTGGCTCTCATGAGAAGCTCAAAAGCAGCAACTTAATGAAAATGCTCGAAGGAAACATGCATGTGGACTACAGCATAACCAAAATAGGGGAGCTTCTGTTTAGAGAAGAGCTCAAAAGTATTGATGAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

104

Amino Acids

11.96

Weight (kDa)

4.74

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 1 - 57 1.9e-11 Peptidase C13 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g10090 FvH4_7g25270
rosa_chinensis RchiOBHm_Chr4g0392641
rosa_rugosa Rorug06G0497100
rosa_samantha Rh2AG423500 Rh3BG092300 Rh6DG346100 Rh7DG317800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 1 cut(s) 113
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 267
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 4 cut(s) 176, 199, 274, 292
AluI AGCT 4 cut(s) 176, 199, 274, 292
Alw21I GWGCWC 2 cut(s) 178, 294
AlwI GGATC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 50, 207
ApoI RAATTY 1 cut(s) 113
BanII GRGCYC 2 cut(s) 178, 294
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 178, 294
BbvI GCAGC 2 cut(s) 62, 219
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 183
BfmI CTRYAG 2 cut(s) 45, 250
BisI GCNGC 2 cut(s) 51, 208
BlsI GCNGC 2 cut(s) 52, 209
Bme1390I CCNGG 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 276, 308
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 267
BseXI GCAGC 2 cut(s) 62, 219
BsiHKAI GWGCWC 2 cut(s) 178, 294
BslI CCNNNNNNNGG 1 cut(s) 267
Bsp1286I GDGCHC 2 cut(s) 178, 294
Bsp143I GATC 1 cut(s) 94
BspHI TCATGA 1 cut(s) 190
BspPI GGATC 1 cut(s) 89
BspQI GCTCTTC 1 cut(s) 282
BssMI GATC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 183
Bst6I CTCTTC 2 cut(s) 57, 282
BstAPI GCANNNNNTGC 1 cut(s) 56
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 47, 56
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 2 cut(s) 241, 245
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 2 cut(s) 45, 250
BstV1I GCAGC 2 cut(s) 62, 219
BstV2I GAAGAC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 159
CciI TCATGA 1 cut(s) 190
Csp6I GTAC 1 cut(s) 120
CviAII CATG 4 cut(s) 101, 191, 238, 242
CviJI RGCY 5 cut(s) 176, 186, 199, 274, 292
CviKI_1 RGCY 5 cut(s) 176, 186, 199, 274, 292
CviQI GTAC 1 cut(s) 120
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 57, 282
EarI CTCTTC 2 cut(s) 57, 282
Ecl136II GAGCTC 2 cut(s) 176, 292
Eco24I GRGCYC 2 cut(s) 178, 294
Eco53kI GAGCTC 2 cut(s) 176, 292
EcoICRI GAGCTC 2 cut(s) 176, 292
EcoRI GAATTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 181
EcoT22I ATGCAT 1 cut(s) 243
EcoT38I GRGCYC 2 cut(s) 178, 294
FaeI CATG 4 cut(s) 104, 194, 241, 245
FatI CATG 4 cut(s) 100, 190, 237, 241
Fnu4HI GCNGC 2 cut(s) 51, 208
FokI GGATG 1 cut(s) 166
FriOI GRGCYC 2 cut(s) 178, 294
Fsp4HI GCNGC 2 cut(s) 51, 208
GluI GCNGC 2 cut(s) 51, 208
Hin1II CATG 4 cut(s) 104, 194, 241, 245
Hpy166II GTNNAC 2 cut(s) 169, 247
Hpy188III TCNNGA 2 cut(s) 151, 191
Hpy8I GTNNAC 2 cut(s) 169, 247
HpyAV CCTTC 1 cut(s) 224
HpyCH4V TGCA 3 cut(s) 59, 77, 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 56
Hsp92II CATG 4 cut(s) 104, 194, 241, 245
Kzo9I GATC 1 cut(s) 94
LguI GCTCTTC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 3 cut(s) 136, 168, 195
Lsp1109I GCAGC 2 cut(s) 62, 219
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 3 cut(s) 74, 143, 299
MhlI GDGCHC 2 cut(s) 178, 294
MluCI AATT 3 cut(s) 82, 113, 161
MnlI CCTC 2 cut(s) 108, 151
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 47, 56
NdeII GATC 1 cut(s) 94
NlaIII CATG 4 cut(s) 104, 194, 241, 245
NsiI ATGCAT 1 cut(s) 243
NspI RCATGY 2 cut(s) 241, 245
PagI TCATGA 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 282
PkrI GCNGC 2 cut(s) 52, 209
Psp124BI GAGCTC 2 cut(s) 178, 294
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 242
SacI GAGCTC 2 cut(s) 178, 294
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 2 cut(s) 51, 208
Sau3AI GATC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 2 cut(s) 178, 294
SetI ASST 5 cut(s) 178, 184, 201, 276, 294
SfcI CTRYAG 2 cut(s) 45, 250
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 3 cut(s) 82, 113, 161
SspI AATATT 1 cut(s) 145
SstI GAGCTC 2 cut(s) 178, 294
StyD4I CCNGG 1 cut(s) 181
TaqI TCGA 1 cut(s) 228
TasI AATT 3 cut(s) 82, 113, 161
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseI GCWGC 2 cut(s) 50, 207
TspDTI ATGAA 2 cut(s) 44, 233
XapI RAATTY 1 cut(s) 113
XceI RCATGY 2 cut(s) 241, 245
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.