Rh7DG317800

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019224
Physical Location & Seq
Forward (+)
37496622 .. 37560153
63532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG317800.1

Sequence Viewer

Length: 612 bp
ATGGCAAACTATTGGAGGTACTTTCAAGTTGATAGAGATCCACCTGTATTTGGAGCCGAAGCTCTACCAGTGCTCAGCTTTCTGACCATTCTTGTTCTTCTGGGTCCAGCAACTCATATAATTGCTAAACCACCCTGCCCAAAAGTAGTGTTGTATGGTGTCACCTGCACTCGATTGGGGGCGGATCCAGAATGCTCAAGACAATGTTGGATGAAAATTGACCCCCAAAGTTTGGCAAATTGCGAAAGCCCCCCTGGTGCGCGCGCCGAAGCTCTACCAATGCTCAGCTTTTTGACCATTCTTGTTCTTCTGGGTCCAGTAGCAAATGCAGAAGAGAATAGTTATGCAACAAATTGTTATGTTGATCCTCATGTTCCTAAAGAATTCGGTACTTGTTTGGAAGACTTGTATAATATTTTCTGGATGGAGGAATTGGTAAACAGAGCTCAACCTGGCTCTCATGAGAAGCTCAAAAGCAGCGACTTAATGAAACTGCTCAAAGGAAACATGCATGTGGACTACAACATAACCAAAATAGGGGAGCTTCTGTTTGGAGAAGAGCTCAAAAGTATTGATGAATGTGAGGCCTTAGGGACAACATCTAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

203

Amino Acids

22.44

Weight (kDa)

4.9

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g10090 FvH4_7g25270
rosa_chinensis RchiOBHm_Chr4g0392641
rosa_rugosa Rorug06G0497100
rosa_samantha Rh2AG423500 Rh3BG092300 Rh6DG346100 Rh7DG317800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 232
AccII CGCG 2 cut(s) 262, 264
AciI CCGC 1 cut(s) 182
AclWI GGATC 4 cut(s) 32, 179, 192, 359
AcsI RAATTY 1 cut(s) 383
AfaI GTAC 2 cut(s) 20, 391
AfiI CCNNNNNNNGG 3 cut(s) 50, 232, 537
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 2 cut(s) 253, 451
AluBI AGCT 8 cut(s) 62, 78, 272, 288, 446, 469, 544, 562
AluI AGCT 8 cut(s) 62, 78, 272, 288, 446, 469, 544, 562
Alw21I GWGCWC 3 cut(s) 75, 448, 564
AlwI GGATC 4 cut(s) 32, 179, 192, 359
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 1 cut(s) 477
ApoI RAATTY 1 cut(s) 383
AspLEI GCGC 3 cut(s) 262, 264, 266
AspS9I GGNCC 2 cut(s) 104, 314
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 2 cut(s) 104, 314
AxyI CCTNAGG 1 cut(s) 589
BamHI GGATCC 1 cut(s) 184
BanII GRGCYC 2 cut(s) 448, 564
BbsI GAAGAC 1 cut(s) 408
Bbv12I GWGCWC 3 cut(s) 75, 448, 564
BbvI GCAGC 1 cut(s) 489
BccI CCATC 1 cut(s) 418
BciT130I CCWGG 2 cut(s) 255, 453
BfaI CTAG 1 cut(s) 603
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 1 cut(s) 478
BlpI GCTNAGC 2 cut(s) 74, 284
BlsI GCNGC 1 cut(s) 479
Bme1390I CCNGG 2 cut(s) 255, 453
Bme18I GGWCC 2 cut(s) 104, 314
BmgT120I GGNCC 2 cut(s) 104, 314
BmiI GGNNCC 4 cut(s) 55, 105, 186, 315
BmrFI CCNGG 2 cut(s) 255, 453
BpiI GAAGAC 1 cut(s) 408
BplI GAGNNNNNCTC 2 cut(s) 546, 578
Bpu1102I GCTNAGC 2 cut(s) 74, 284
BpuEI CTTGAG 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 232, 537
Bse1I ACTGG 2 cut(s) 68, 317
Bse21I CCTNAGG 1 cut(s) 589
Bse8I GATNNNNATC 1 cut(s) 36
BseBI CCWGG 2 cut(s) 255, 453
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 216, 429
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 3 cut(s) 50, 232, 537
BseMII CTCAG 2 cut(s) 88, 298
BseNI ACTGG 2 cut(s) 68, 317
BsePI GCGCGC 2 cut(s) 260, 262
BseXI GCAGC 1 cut(s) 489
BsgI GTGCAG 1 cut(s) 151
Bsh1236I CGCG 2 cut(s) 262, 264
BshFI GGCC 1 cut(s) 587
BsiHKAI GWGCWC 3 cut(s) 75, 448, 564
BslFI GGGAC 1 cut(s) 607
BslI CCNNNNNNNGG 3 cut(s) 50, 232, 537
BsmFI GGGAC 1 cut(s) 607
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 1 cut(s) 587
Bsp1286I GDGCHC 3 cut(s) 75, 448, 564
Bsp143I GATC 3 cut(s) 37, 184, 364
Bsp1720I GCTNAGC 2 cut(s) 74, 284
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 2 cut(s) 87, 297
BspFNI CGCG 2 cut(s) 262, 264
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 4 cut(s) 55, 105, 186, 315
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 4 cut(s) 32, 179, 192, 359
BspQI GCTCTTC 1 cut(s) 552
BsrI ACTGG 2 cut(s) 68, 317
BssECI CCNNGG 1 cut(s) 253
BssHII GCGCGC 2 cut(s) 260, 262
BssMI GATC 3 cut(s) 37, 184, 364
Bst2UI CCWGG 2 cut(s) 255, 453
Bst6I CTCTTC 2 cut(s) 327, 552
BstC8I GCNNGC 2 cut(s) 262, 264
BstDEI CTNAG 3 cut(s) 74, 284, 589
BstF5I GGATG 2 cut(s) 216, 429
BstFNI CGCG 2 cut(s) 262, 264
BstHHI GCGC 3 cut(s) 262, 264, 266
BstKTI GATC 3 cut(s) 40, 187, 367
BstMBI GATC 3 cut(s) 37, 184, 364
BstNI CCWGG 2 cut(s) 255, 453
BstNSI RCATGY 2 cut(s) 511, 515
BstSCI CCNGG 2 cut(s) 253, 451
BstUI CGCG 2 cut(s) 262, 264
BstV1I GCAGC 1 cut(s) 489
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 2 cut(s) 37, 184
BstYI RGATCY 2 cut(s) 37, 184
Bsu36I CCTNAGG 1 cut(s) 589
BsuRI GGCC 1 cut(s) 587
BtsCI GGATG 2 cut(s) 216, 429
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 262, 264
CciI TCATGA 1 cut(s) 460
CfoI GCGC 3 cut(s) 262, 264, 266
Cfr13I GGNCC 2 cut(s) 104, 314
Csp6I GTAC 2 cut(s) 19, 390
CviAII CATG 4 cut(s) 371, 461, 508, 512
CviQI GTAC 2 cut(s) 19, 390
DdeI CTNAG 3 cut(s) 74, 284, 589
DpnI GATC 3 cut(s) 39, 186, 366
DpnII GATC 3 cut(s) 37, 184, 364
Eam1104I CTCTTC 2 cut(s) 327, 552
EarI CTCTTC 2 cut(s) 327, 552
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 2 cut(s) 446, 562
Eco147I AGGCCT 1 cut(s) 587
Eco24I GRGCYC 2 cut(s) 448, 564
Eco47I GGWCC 2 cut(s) 104, 314
Eco53kI GAGCTC 2 cut(s) 446, 562
Eco81I CCTNAGG 1 cut(s) 589
EcoICRI GAGCTC 2 cut(s) 446, 562
EcoRI GAATTC 1 cut(s) 383
EcoRII CCWGG 2 cut(s) 253, 451
EcoT22I ATGCAT 1 cut(s) 513
EcoT38I GRGCYC 2 cut(s) 448, 564
FaeI CATG 4 cut(s) 374, 464, 511, 515
FaqI GGGAC 1 cut(s) 607
FatI CATG 4 cut(s) 370, 460, 507, 511
Fnu4HI GCNGC 1 cut(s) 478
FokI GGATG 2 cut(s) 223, 436
FriOI GRGCYC 2 cut(s) 448, 564
Fsp4HI GCNGC 1 cut(s) 478
FspBI CTAG 1 cut(s) 603
GlaI GCGC 3 cut(s) 261, 263, 265
GluI GCNGC 1 cut(s) 478
HaeIII GGCC 1 cut(s) 587
HhaI GCGC 3 cut(s) 262, 264, 266
Hin1II CATG 4 cut(s) 374, 464, 511, 515
Hin6I GCGC 3 cut(s) 260, 262, 264
HinP1I GCGC 3 cut(s) 260, 262, 264
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 439, 517
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 4 cut(s) 188, 198, 421, 461
Hpy8I GTNNAC 2 cut(s) 439, 517
HpyCH4V TGCA 4 cut(s) 168, 329, 347, 511
HpyF3I CTNAG 3 cut(s) 74, 284, 589
Hsp92II CATG 4 cut(s) 374, 464, 511, 515
HspAI GCGC 3 cut(s) 260, 262, 264
Kzo9I GATC 3 cut(s) 37, 184, 364
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 2 cut(s) 53, 541
Lsp1109I GCAGC 1 cut(s) 489
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 39, 186, 366
MboI GATC 3 cut(s) 37, 184, 364
MboII GAAGA 5 cut(s) 89, 299, 344, 413, 569
MflI RGATCY 2 cut(s) 37, 184
MhlI GDGCHC 3 cut(s) 75, 448, 564
MluCI AATT 6 cut(s) 120, 216, 238, 352, 383, 431
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 4 cut(s) 9, 378, 421, 577
Mph1103I ATGCAT 1 cut(s) 513
MseI TTAA 1 cut(s) 485
MslI CAYNNNNRTG 1 cut(s) 512
MspR9I CCNGG 2 cut(s) 255, 453
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 2 cut(s) 255, 453
MvnI CGCG 2 cut(s) 262, 264
NdeII GATC 3 cut(s) 37, 184, 364
NlaIII CATG 4 cut(s) 374, 464, 511, 515
NlaIV GGNNCC 4 cut(s) 55, 105, 186, 315
NmuCI GTSAC 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 513
NspI RCATGY 2 cut(s) 511, 515
PagI TCATGA 1 cut(s) 460
PaqCI CACCTGC 1 cut(s) 173
PauI GCGCGC 2 cut(s) 260, 262
PceI AGGCCT 1 cut(s) 587
PciSI GCTCTTC 1 cut(s) 552
PctI GAATGC 1 cut(s) 197
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 1 cut(s) 479
Psp124BI GAGCTC 2 cut(s) 448, 564
Psp6I CCWGG 2 cut(s) 253, 451
PspGI CCWGG 2 cut(s) 253, 451
PspN4I GGNNCC 4 cut(s) 55, 105, 186, 315
PspPI GGNCC 2 cut(s) 104, 314
PsuI RGATCY 2 cut(s) 37, 184
PteI GCGCGC 2 cut(s) 260, 262
RsaI GTAC 2 cut(s) 20, 391
RsaNI GTAC 2 cut(s) 19, 390
RseI CAYNNNNRTG 1 cut(s) 512
SacI GAGCTC 2 cut(s) 448, 564
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 1 cut(s) 485
SatI GCNGC 1 cut(s) 478
Sau3AI GATC 3 cut(s) 37, 184, 364
Sau96I GGNCC 2 cut(s) 104, 314
ScrFI CCNGG 2 cut(s) 255, 453
SduI GDGCHC 3 cut(s) 75, 448, 564
SinI GGWCC 2 cut(s) 104, 314
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 6 cut(s) 120, 216, 238, 352, 383, 431
SseBI AGGCCT 1 cut(s) 587
SsiI CCGC 1 cut(s) 182
SspI AATATT 1 cut(s) 415
SspMI CTAG 1 cut(s) 603
SstI GAGCTC 2 cut(s) 448, 564
StuI AGGCCT 1 cut(s) 587
StyD4I CCNGG 2 cut(s) 253, 451
TaqI TCGA 1 cut(s) 172
TasI AATT 6 cut(s) 120, 216, 238, 352, 383, 431
Tru1I TTAA 1 cut(s) 485
Tru9I TTAA 1 cut(s) 485
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 477
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 227, 503, 591
TspRI CASTG 1 cut(s) 75
Van91I CCANNNNNTGG 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 104, 314
XapI RAATTY 1 cut(s) 383
XceI RCATGY 2 cut(s) 511, 515
XspI CTAG 1 cut(s) 603
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.