Rh3BG092300

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0019224
Physical Location & Seq
Reverse (-)
7284583 .. 7285203
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG092300.1

Sequence Viewer

Length: 342 bp
ATGTTTGAGGGTTTGGTTCTAAAGAAAATGAATATTTATGCTACTACAGCAGCAAATGCAGAAGAGAATAGTTATGCAACAAATTGTTATGTTGATCCTCATGTTCCTAAAGAATTCGGTACTTGTTTGGAAGACTTGTATAATATTTTCTGGCTGGAGGAATTGGTAAACAGAGCTCAACCTGGCTCTCATGAGAAGCTCAAAAGCAGCGACTTAATGAAACTGCTCAAAGGAAACATGCATGTGGACTACAGCATAACCAAAATAGGGGAGCTTCTATTTGGAGAAGAGCTCAAAAGTATTGATGAATGTGAGGCCTTAGGGACAACATCTAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

113

Amino Acids

12.64

Weight (kDa)

4.76

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 1 - 57 1.7e-10 Peptidase C13 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g10090 FvH4_7g25270
rosa_chinensis RchiOBHm_Chr4g0392641
rosa_rugosa Rorug06G0497100
rosa_samantha Rh2AG423500 Rh3BG092300 Rh6DG346100 Rh7DG317800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 1 cut(s) 113
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 267
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 4 cut(s) 176, 199, 274, 292
AluI AGCT 4 cut(s) 176, 199, 274, 292
Alw21I GWGCWC 2 cut(s) 178, 294
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 2 cut(s) 50, 207
ApoI RAATTY 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 319
BanII GRGCYC 2 cut(s) 178, 294
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 178, 294
BbvI GCAGC 2 cut(s) 62, 219
BciT130I CCWGG 1 cut(s) 183
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 2 cut(s) 45, 250
BisI GCNGC 2 cut(s) 51, 208
BlsI GCNGC 2 cut(s) 52, 209
Bme1390I CCNGG 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 276, 308
BpmI CTGGAG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse21I CCTNAGG 1 cut(s) 319
BseBI CCWGG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 267
BseXI GCAGC 2 cut(s) 62, 219
BshFI GGCC 1 cut(s) 317
BsiHKAI GWGCWC 2 cut(s) 178, 294
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 337
BsnI GGCC 1 cut(s) 317
Bsp1286I GDGCHC 2 cut(s) 178, 294
Bsp143I GATC 1 cut(s) 94
BspANI GGCC 1 cut(s) 317
BspHI TCATGA 1 cut(s) 190
BspPI GGATC 1 cut(s) 89
BspQI GCTCTTC 1 cut(s) 282
BssMI GATC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 183
Bst6I CTCTTC 2 cut(s) 57, 282
BstAPI GCANNNNNTGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 319
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 47, 56
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 2 cut(s) 241, 245
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 2 cut(s) 45, 250
BstV1I GCAGC 2 cut(s) 62, 219
BstV2I GAAGAC 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 319
BsuRI GGCC 1 cut(s) 317
CciI TCATGA 1 cut(s) 190
Csp6I GTAC 1 cut(s) 120
CviAII CATG 4 cut(s) 101, 191, 238, 242
CviJI RGCY 7 cut(s) 154, 176, 186, 199, 274, 292, 317
CviKI_1 RGCY 7 cut(s) 154, 176, 186, 199, 274, 292, 317
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 319
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 57, 282
EarI CTCTTC 2 cut(s) 57, 282
Ecl136II GAGCTC 2 cut(s) 176, 292
Eco147I AGGCCT 1 cut(s) 317
Eco24I GRGCYC 2 cut(s) 178, 294
Eco53kI GAGCTC 2 cut(s) 176, 292
Eco81I CCTNAGG 1 cut(s) 319
EcoICRI GAGCTC 2 cut(s) 176, 292
EcoRI GAATTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 181
EcoT22I ATGCAT 1 cut(s) 243
EcoT38I GRGCYC 2 cut(s) 178, 294
FaeI CATG 4 cut(s) 104, 194, 241, 245
FaiI YATR 9 cut(s) 39, 75, 90, 102, 141, 192, 239, 243, 257
FaqI GGGAC 1 cut(s) 337
FatI CATG 4 cut(s) 100, 190, 237, 241
Fnu4HI GCNGC 2 cut(s) 51, 208
FriOI GRGCYC 2 cut(s) 178, 294
Fsp4HI GCNGC 2 cut(s) 51, 208
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 51, 208
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 317
Hin1II CATG 4 cut(s) 104, 194, 241, 245
Hpy166II GTNNAC 2 cut(s) 169, 247
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 2 cut(s) 169, 247
HpyCH4V TGCA 3 cut(s) 59, 77, 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 56
HpyF3I CTNAG 1 cut(s) 319
Hsp92II CATG 4 cut(s) 104, 194, 241, 245
Kzo9I GATC 1 cut(s) 94
LguI GCTCTTC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 4 cut(s) 136, 140, 168, 195
Lsp1109I GCAGC 2 cut(s) 62, 219
MaeI CTAG 1 cut(s) 333
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 3 cut(s) 74, 143, 299
MhlI GDGCHC 2 cut(s) 178, 294
MluCI AATT 3 cut(s) 82, 113, 161
MnlI CCTC 3 cut(s) 108, 151, 307
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 47, 56
NdeII GATC 1 cut(s) 94
NlaIII CATG 4 cut(s) 104, 194, 241, 245
NsiI ATGCAT 1 cut(s) 243
NspI RCATGY 2 cut(s) 241, 245
PagI TCATGA 1 cut(s) 190
PceI AGGCCT 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 282
PkrI GCNGC 2 cut(s) 52, 209
Psp124BI GAGCTC 2 cut(s) 178, 294
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 242
SacI GAGCTC 2 cut(s) 178, 294
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 2 cut(s) 51, 208
Sau3AI GATC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 2 cut(s) 178, 294
SetI ASST 5 cut(s) 178, 184, 201, 276, 294
SfcI CTRYAG 2 cut(s) 45, 250
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 3 cut(s) 82, 113, 161
SseBI AGGCCT 1 cut(s) 317
SspI AATATT 2 cut(s) 34, 145
SspMI CTAG 1 cut(s) 333
SstI GAGCTC 2 cut(s) 178, 294
StuI AGGCCT 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 181
TasI AATT 3 cut(s) 82, 113, 161
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseI GCWGC 2 cut(s) 50, 207
TspDTI ATGAA 3 cut(s) 44, 233, 321
XapI RAATTY 1 cut(s) 113
XceI RCATGY 2 cut(s) 241, 245
XspI CTAG 1 cut(s) 333
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.