RchiOBHm_Chr4g0408961

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008997
Physical Location & Seq
Forward (+)
31930531 .. 31941631
11101 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
ATGGCTTATGAATTGACTGAGCAAAAAAAGGTTGGGTTGGGTCTTCTTGGGTTTGGCATCTTATTCGCATTTCTGGGTGTGGTGCTTTTCTTCGACAGAGGTTTGATTGCTCTTGGGAATATATTTTGGTTGACTGGGGTGGCCCTTTTACTTGGTTGGCGTTCTACATTGAATGTCTTCACTAGCAAAGCACACGTAAAGGGTTCTGCATCTTTTCTGATTGGTCTCTTTTTCCTTTTTGTTCGGTGGCCAATACTTGGCATAATCTTGGAACTATATGGTTGTATCGTTCTGTTCGGTGGTTTTTGGCCAACTATAAAGGTGTTCCTCTGTGAAGTTCCATTTTTGGGATGGGTTATACGATATATGTTCTGGAATATCACTGTAGAGGTCAAGTCTACCGCATTTATTCGTTATAAAAATTCCATGTGTGCACTGCAAAGACCTTTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

151

Amino Acids

17.13

Weight (kDa)

9.67

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 15 - 114 2e-09 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
AccB7I CCANNNNNTGG 1 cut(s) 257
AccI GTMKAC 1 cut(s) 398
AciI CCGC 1 cut(s) 402
AcoI YGGCCR 2 cut(s) 248, 308
AcsI RAATTY 1 cut(s) 421
AfiI CCNNNNNNNGG 2 cut(s) 257, 347
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 1 cut(s) 230
Alw44I GTGCAC 1 cut(s) 432
AoxI GGCC 3 cut(s) 141, 248, 308
ApaLI GTGCAC 1 cut(s) 432
ApoI RAATTY 1 cut(s) 421
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 436
BalI TGGCCA 2 cut(s) 250, 310
BbsI GAAGAC 2 cut(s) 35, 169
Bbv12I GWGCWC 1 cut(s) 436
BccI CCATC 1 cut(s) 345
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 2 cut(s) 384, 452
BmgT120I GGNCC 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 66, 218
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 35, 169
BsaAI YACGTR 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 347
Bse1I ACTGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 257, 347
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 139
BseSI GKGCMC 1 cut(s) 436
BshFI GGCC 3 cut(s) 143, 250, 310
BsiHKAI GWGCWC 1 cut(s) 436
BslI CCNNNNNNNGG 2 cut(s) 257, 347
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 3 cut(s) 143, 250, 310
Bso31I GGTCTC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 436
BspACI CCGC 1 cut(s) 402
BspANI GGCC 3 cut(s) 143, 250, 310
BspCNI CTCAG 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 385
BstBAI YACGTR 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 356
BstMAI GTCTC 1 cut(s) 230
BstSFI CTRYAG 2 cut(s) 384, 452
BstSLI GKGCMC 1 cut(s) 436
BstV2I GAAGAC 2 cut(s) 35, 169
BsuRI GGCC 3 cut(s) 143, 250, 310
BtsCI GGATG 1 cut(s) 356
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 2 cut(s) 381, 434
Cfr13I GGNCC 1 cut(s) 142
CviAII CATG 1 cut(s) 427
CviJI RGCY 4 cut(s) 5, 143, 250, 310
CviKI_1 RGCY 4 cut(s) 5, 143, 250, 310
DdeI CTNAG 1 cut(s) 18
EaeI YGGCCR 2 cut(s) 248, 308
Eco31I GGTCTC 1 cut(s) 230
FaeI CATG 1 cut(s) 430
FatI CATG 1 cut(s) 426
FblI GTMKAC 1 cut(s) 398
FokI GGATG 1 cut(s) 363
FspBI CTAG 1 cut(s) 183
HaeIII GGCC 3 cut(s) 143, 250, 310
Hin1II CATG 1 cut(s) 430
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
Hpy166II GTNNAC 3 cut(s) 132, 399, 434
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 3 cut(s) 132, 399, 434
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 209, 434, 439
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 1 cut(s) 430
LpnPI CCDG 3 cut(s) 59, 120, 358
LweI GCATC 2 cut(s) 66, 218
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 195
MboII GAAGA 3 cut(s) 35, 82, 169
MhlI GDGCHC 1 cut(s) 436
MlsI TGGCCA 2 cut(s) 250, 310
MluCI AATT 2 cut(s) 11, 421
MluNI TGGCCA 2 cut(s) 250, 310
MnlI CCTC 3 cut(s) 92, 338, 382
Mox20I TGGCCA 2 cut(s) 250, 310
MroXI GAANNNNTTC 1 cut(s) 176
MscI TGGCCA 2 cut(s) 250, 310
Msp20I TGGCCA 2 cut(s) 250, 310
NlaIII CATG 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 257
Ppu21I YACGTR 1 cut(s) 196
PsiI TTATAA 1 cut(s) 417
PspPI GGNCC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 436
SetI ASST 6 cut(s) 33, 103, 198, 324, 393, 448
SfaNI GCATC 2 cut(s) 66, 218
SfcI CTRYAG 2 cut(s) 384, 452
Sse9I AATT 2 cut(s) 11, 421
SsiI CCGC 1 cut(s) 402
SspMI CTAG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 11, 421
TscAI CASTG 2 cut(s) 388, 441
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 2 cut(s) 388, 441
Van91I CCANNNNNTGG 1 cut(s) 257
VneI GTGCAC 1 cut(s) 432
XapI RAATTY 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.