Rw4G012590

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0008997
Physical Location & Seq
Forward (+)
29614197 .. 29618712
4516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G012590.1

Sequence Viewer

Length: 375 bp
ATGGCTTATGAATTGACTGAGCAAAAAAAGGTTGGGTTGGGTCTTCTTGGGTTTGGCATTTTATTCGCATTTCTGGGTGTAGTGCTTTTCTTCGACAGAGGTTTGATTGCTCTTGGGAATATATTTTGGTTGACTGGGGTGGCCCTTTTACTTGGTTGGCGTTCTACATTGAATGTCTTCACTAGCAAAGCACACGTTAAGGGTTCTGCATCTTTTCTGATTGGTCTCTTTTTCCTTTTTGTTCGGTGGCCAATACTTGGCATAATCTTGGAACTATATGGTTGTATCGTTCTGTTCGGTGGTTTTTGGCCAACTATAAAGGTGTTCCTCTGTGAAGTTCCATTTTTGGGATGGGTTATACGATATATGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

124

Amino Acids

13.96

Weight (kDa)

9.39

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 15 - 114 1e-09 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 257
AcoI YGGCCR 2 cut(s) 248, 308
AfiI CCNNNNNNNGG 2 cut(s) 257, 347
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 230
AoxI GGCC 3 cut(s) 141, 248, 308
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 142
BalI TGGCCA 2 cut(s) 250, 310
BbsI GAAGAC 2 cut(s) 35, 169
BccI CCATC 1 cut(s) 345
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 35, 169
BsaI GGTCTC 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 347
Bse1I ACTGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 257, 347
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 139
BshFI GGCC 3 cut(s) 143, 250, 310
BslI CCNNNNNNNGG 2 cut(s) 257, 347
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 3 cut(s) 143, 250, 310
Bso31I GGTCTC 1 cut(s) 230
BspANI GGCC 3 cut(s) 143, 250, 310
BspCNI CTCAG 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 356
BstMAI GTCTC 1 cut(s) 230
BstV2I GAAGAC 2 cut(s) 35, 169
BsuRI GGCC 3 cut(s) 143, 250, 310
BtsCI GGATG 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 142
CviJI RGCY 4 cut(s) 5, 143, 250, 310
CviKI_1 RGCY 4 cut(s) 5, 143, 250, 310
DdeI CTNAG 1 cut(s) 18
EaeI YGGCCR 2 cut(s) 248, 308
Eco31I GGTCTC 1 cut(s) 230
FaiI YATR 9 cut(s) 9, 122, 263, 277, 279, 317, 359, 366, 368
FokI GGATG 1 cut(s) 363
FspBI CTAG 1 cut(s) 183
HaeIII GGCC 3 cut(s) 143, 250, 310
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 219, 374
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 195
LpnPI CCDG 2 cut(s) 59, 120
LweI GCATC 1 cut(s) 218
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 195
MboII GAAGA 3 cut(s) 35, 82, 169
MlsI TGGCCA 2 cut(s) 250, 310
MluCI AATT 1 cut(s) 11
MluNI TGGCCA 2 cut(s) 250, 310
MnlI CCTC 2 cut(s) 92, 338
Mox20I TGGCCA 2 cut(s) 250, 310
MroXI GAANNNNTTC 1 cut(s) 176
MscI TGGCCA 2 cut(s) 250, 310
MseI TTAA 1 cut(s) 198
Msp20I TGGCCA 2 cut(s) 250, 310
PdmI GAANNNNTTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 257
PspPI GGNCC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 142
SetI ASST 4 cut(s) 33, 103, 198, 324
SfaNI GCATC 1 cut(s) 218
SgeI CNNG 9 cut(s) 59, 86, 125, 147, 164, 195, 206, 269, 280
Sse9I AATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 183
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 11
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.