Rh4DG146200

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0008997
Physical Location & Seq
Forward (+)
29127672 .. 29133128
5457 bp
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UTR
Exon/CDS
Intron
Rh4DG146200.1

Sequence Viewer

Length: 348 bp
ATGGCTTATGAATTGACTGAGCAAAAAAAGGTTGGGTTGGGTCTTCTTGGGTTTGGCATTTTATTCGCATTTCTGGGTGTAGTGCTTTTCTTCGACAGAGGTTTGATTGCTCTTGGGAATATATTTTGGTTGACTGGGGTGGCCCTTTTACTTGGTTGGCGTTCTACATTGAATGTCTTCACTAGCAAAGCACACGTTAAGGGTTCTGCATCTTTTCTGATTGGTCTCTTTTTCCTTTTTGTTCGGTGGCCAATACTTGGCATAATCTTGGAACTATATGGTTGTATCGTTCTGTTCGGGTTCGTTTCTTCTATCAACATTATGCTTCAAGTATATAATATATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

115

Amino Acids

12.8

Weight (kDa)

9.36

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 15 - 110 2.1e-08 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 2 cut(s) 172, 329
Alw26I GTCTC 1 cut(s) 230
AoxI GGCC 2 cut(s) 141, 248
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 142
BalI TGGCCA 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 35, 169
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 2 cut(s) 183, 346
BmgT120I GGNCC 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 35, 169
BsaI GGTCTC 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 139
BshFI GGCC 2 cut(s) 143, 250
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 2 cut(s) 143, 250
Bso31I GGTCTC 1 cut(s) 230
BspANI GGCC 2 cut(s) 143, 250
BspCNI CTCAG 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 230
BstV2I GAAGAC 2 cut(s) 35, 169
BsuRI GGCC 2 cut(s) 143, 250
Cfr13I GGNCC 1 cut(s) 142
CviJI RGCY 3 cut(s) 5, 143, 250
CviKI_1 RGCY 3 cut(s) 5, 143, 250
DdeI CTNAG 1 cut(s) 18
EaeI YGGCCR 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 230
FaiI YATR 9 cut(s) 9, 122, 263, 277, 279, 323, 334, 336, 341
FspBI CTAG 2 cut(s) 183, 346
HaeIII GGCC 2 cut(s) 143, 250
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 219
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 195
LpnPI CCDG 2 cut(s) 59, 120
LweI GCATC 1 cut(s) 218
MaeI CTAG 2 cut(s) 183, 346
MaeII ACGT 1 cut(s) 195
MboII GAAGA 4 cut(s) 35, 82, 169, 300
MlsI TGGCCA 1 cut(s) 250
MluCI AATT 1 cut(s) 11
MluNI TGGCCA 1 cut(s) 250
MnlI CCTC 1 cut(s) 92
Mox20I TGGCCA 1 cut(s) 250
MroXI GAANNNNTTC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 250
MseI TTAA 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 257
PspPI GGNCC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 142
SetI ASST 3 cut(s) 33, 103, 198
SfaNI GCATC 1 cut(s) 218
Sse9I AATT 1 cut(s) 11
SspMI CTAG 2 cut(s) 183, 346
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 11
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 2 cut(s) 183, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.