RchiOBHm_Chr4g0409411

Lactoylglutathione lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017569
Physical Location & Seq
Forward (+)
32824863 .. 32826321
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGGCAGCAATGGTAGCACGAGTAACTCTGGATCACATTGCCAGACAATCCAACGACATTAGGCGCCTCGCCGATTTCTACATAGAGACATTTGGATTCGAGGAGGTAGAGAGCCCAAAGATTGGGCCACTCAAGGTAATATGGCTGAGTTTACCCTCAGGTTTTACTATACACCTTATTGAGTCCAACCCAAGTTACCCACCTAACCAGAGGAACGACACATCACCGGGAGCCGACCCAGCTCGTATTCCCAGAGGCCACCATATGTGCTTCTCTGTCTCCAATTTCGAAACCTTTGTGCAAACACTCGAGGAAAAGGGAATTCAGATTGCTCATAGGCCAGTTCAATTTAATCCAAATGGCAGTAAGAAGATCGACCAGGTCTTTTTCTTTGATCCAGATGGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase Glyoxalase_4

Protein Analysis

136

Amino Acids

15.34

Weight (kDa)

5.91

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxalase PF00903 10 - 136 2.3e-10 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4 PF13669 11 - 117 7.6e-07 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017569)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03680 FvH4_1g03680
rosa_chinensis RchiOBHm_Chr4g0409411
rosa_laevigata RLG00000008020 RLG00000008563
rosa_multiflora Rmu_sc0001616.1_g000039
rosa_roxburghii Rroxscaffold_5G00353930
rosa_rugosa Rorug04G0093600 Rorug04G0093900
rosa_samantha Rh4BG155300 Rh4CG165400
rosa_wichuraiana Rw4G012780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AccB7I CCANNNNNTGG 1 cut(s) 122
AclWI GGATC 2 cut(s) 39, 389
AcsI RAATTY 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 2 cut(s) 80, 283
AlwI GGATC 2 cut(s) 39, 389
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 3 cut(s) 125, 256, 338
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 321
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 216
AsuII TTCGAA 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 308
AxyI CCTNAGG 1 cut(s) 157
BanI GGYRCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 116
BauI CACGAG 1 cut(s) 18
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 380
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 2 cut(s) 80, 283
BfoI RGCGCY 1 cut(s) 67
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 228, 380
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 65, 232
BmrFI CCNGG 2 cut(s) 228, 380
Bpu14I TTCGAA 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 341
Bse21I CCTNAGG 1 cut(s) 157
Bse3DI GCAATG 2 cut(s) 15, 36
BseBI CCWGG 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 2 cut(s) 15, 36
BseMII CTCAG 2 cut(s) 137, 171
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 238
BshFI GGCC 3 cut(s) 127, 258, 340
BshNI GGYRCC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 80, 283
BsnI GGCC 3 cut(s) 127, 258, 340
BsoBI CYCGRG 1 cut(s) 308
Bsp119I TTCGAA 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 3 cut(s) 31, 372, 394
BspANI GGCC 3 cut(s) 127, 258, 340
BspCNI CTCAG 2 cut(s) 138, 170
BspLI GGNNCC 2 cut(s) 65, 232
BspPI GGATC 2 cut(s) 39, 389
BspT104I TTCGAA 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 63
BsrDI GCAATG 2 cut(s) 15, 36
BsrI ACTGG 1 cut(s) 341
BssMI GATC 3 cut(s) 31, 372, 394
BssNI GRCGYC 1 cut(s) 64
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 380
BstACI GRCGYC 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 146, 157
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 3 cut(s) 34, 375, 397
BstMAI GTCTC 2 cut(s) 80, 283
BstMBI GATC 3 cut(s) 31, 372, 394
BstMWI GCNNNNNNNGC 2 cut(s) 14, 239
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 226, 378
BstV1I GCAGC 1 cut(s) 17
Bsu36I CCTNAGG 1 cut(s) 157
BsuRI GGCC 3 cut(s) 127, 258, 340
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 125
CsiI ACCWGGT 1 cut(s) 378
CviJI RGCY 7 cut(s) 114, 127, 145, 233, 242, 258, 340
CviKI_1 RGCY 7 cut(s) 114, 127, 145, 233, 242, 258, 340
DdeI CTNAG 2 cut(s) 146, 157
DinI GGCGCC 1 cut(s) 65
DpnI GATC 3 cut(s) 33, 374, 396
DpnII GATC 3 cut(s) 31, 372, 394
Eco24I GRGCYC 1 cut(s) 116
Eco81I CCTNAGG 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 116
EgeI GGCGCC 1 cut(s) 65
EheI GGCGCC 1 cut(s) 65
FaiI YATR 7 cut(s) 83, 142, 170, 264, 266, 336, 409
FauNDI CATATG 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 3 cut(s) 127, 258, 340
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 64
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 2 cut(s) 96, 182
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 216
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 327
Hpy188III TCNNGA 2 cut(s) 29, 398
Hpy8I GTNNAC 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 239
HpyF3I CTNAG 2 cut(s) 146, 157
Hsp92I GRCGYC 1 cut(s) 64
HspAI GCGC 1 cut(s) 64
KasI GGCGCC 1 cut(s) 63
Kzo9I GATC 3 cut(s) 31, 372, 394
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 1 cut(s) 17
MabI ACCWGGT 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 22, 194
MalI GATC 3 cut(s) 33, 374, 396
MboI GATC 3 cut(s) 31, 372, 394
MboII GAAGA 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 3 cut(s) 283, 321, 347
Mly113I GGCGCC 1 cut(s) 64
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 2 cut(s) 75, 210
MnlI CCTC 7 cut(s) 77, 94, 97, 166, 204, 248, 304
MseI TTAA 1 cut(s) 351
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 228, 380
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 2 cut(s) 14, 239
NarI GGCGCC 1 cut(s) 64
NciI CCSGG 1 cut(s) 228
NdeI CATATG 1 cut(s) 264
NdeII GATC 3 cut(s) 31, 372, 394
NlaIV GGNNCC 2 cut(s) 65, 232
NspV TTCGAA 1 cut(s) 288
PaeR7I CTCGAG 1 cut(s) 308
PfeI GAWTC 1 cut(s) 96
PflFI GACNNNGTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 190
PluTI GGCGCC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 378
PspFI CCCAGC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 65, 232
PspPI GGNCC 1 cut(s) 125
PspXI VCTCGAGB 1 cut(s) 308
PsyI GACNNNGTC 1 cut(s) 380
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 31, 372, 394
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 228, 380
SduI GDGCHC 1 cut(s) 116
SetI ASST 8 cut(s) 108, 138, 163, 177, 205, 244, 296, 384
SexAI ACCWGGT 1 cut(s) 378
SfoI GGCGCC 1 cut(s) 65
Sfr274I CTCGAG 1 cut(s) 308
SfuI TTCGAA 1 cut(s) 288
SlaI CTCGAG 1 cut(s) 308
SmlI CTYRAG 2 cut(s) 131, 308
SmoI CTYRAG 2 cut(s) 131, 308
Sse9I AATT 3 cut(s) 283, 321, 347
SspDI GGCGCC 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 226, 378
TaqI TCGA 4 cut(s) 99, 288, 309, 375
TasI AATT 3 cut(s) 283, 321, 347
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseI GCWGC 1 cut(s) 5
Tth111I GACNNNGTC 1 cut(s) 380
Van91I CCANNNNNTGG 1 cut(s) 122
XapI RAATTY 1 cut(s) 321
XhoI CTCGAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.