Epimerase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g10480 FvH4_2g10480 |
| rosa_chinensis | RchiOBHm_Chr4g0411071 RchiOBHm_Chr4g0411081 RchiOBHm_Chr4g0437651 RchiOBHm_Chr5g0026021 |
| rosa_roxburghii | Rroxscaffold_3G00236100 |
| rosa_rugosa | Rorug05G0260800 |
| rosa_samantha | Rh4DG102300 Rh6AG157900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AjnI | CCWGG | 1 cut(s) | 132 |
| AluBI | AGCT | 1 cut(s) | 121 |
| AluI | AGCT | 1 cut(s) | 121 |
| AsuC2I | CCSGG | 1 cut(s) | 111 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 34 |
| BciT130I | CCWGG | 1 cut(s) | 134 |
| BcnI | CCSGG | 1 cut(s) | 111 |
| Bme1390I | CCNGG | 2 cut(s) | 111, 134 |
| BmrFI | CCNGG | 2 cut(s) | 111, 134 |
| BpuMI | CCSGG | 1 cut(s) | 111 |
| BseBI | CCWGG | 1 cut(s) | 134 |
| BseMII | CTCAG | 1 cut(s) | 87 |
| BseYI | CCCAGC | 1 cut(s) | 121 |
| BsiSI | CCGG | 1 cut(s) | 110 |
| BsmI | GAATGC | 1 cut(s) | 52 |
| Bsp143I | GATC | 1 cut(s) | 86 |
| BspCNI | CTCAG | 1 cut(s) | 88 |
| BssMI | GATC | 1 cut(s) | 86 |
| Bst2UI | CCWGG | 1 cut(s) | 134 |
| Bst4CI | ACNGT | 1 cut(s) | 81 |
| BstDEI | CTNAG | 1 cut(s) | 96 |
| BstKTI | GATC | 1 cut(s) | 89 |
| BstMBI | GATC | 1 cut(s) | 86 |
| BstNI | CCWGG | 1 cut(s) | 134 |
| BstNSI | RCATGY | 1 cut(s) | 71 |
| BstSCI | CCNGG | 2 cut(s) | 109, 132 |
| CviAII | CATG | 1 cut(s) | 68 |
| CviJI | RGCY | 2 cut(s) | 95, 121 |
| CviKI_1 | RGCY | 2 cut(s) | 95, 121 |
| DdeI | CTNAG | 1 cut(s) | 96 |
| DpnI | GATC | 1 cut(s) | 88 |
| DpnII | GATC | 1 cut(s) | 86 |
| EcoRII | CCWGG | 1 cut(s) | 132 |
| FaeI | CATG | 1 cut(s) | 71 |
| FaiI | YATR | 2 cut(s) | 60, 69 |
| FatI | CATG | 1 cut(s) | 67 |
| GsaI | CCCAGC | 1 cut(s) | 125 |
| HapII | CCGG | 1 cut(s) | 110 |
| Hin1II | CATG | 1 cut(s) | 71 |
| HinfI | GANTC | 1 cut(s) | 137 |
| HpaII | CCGG | 1 cut(s) | 110 |
| Hpy188III | TCNNGA | 1 cut(s) | 73 |
| HpyCH4III | ACNGT | 1 cut(s) | 81 |
| HpyCH4V | TGCA | 3 cut(s) | 11, 50, 67 |
| HpyF3I | CTNAG | 1 cut(s) | 96 |
| Hsp92II | CATG | 1 cut(s) | 71 |
| Kzo9I | GATC | 1 cut(s) | 86 |
| LpnPI | CCDG | 3 cut(s) | 107, 119, 123 |
| MalI | GATC | 1 cut(s) | 88 |
| MboI | GATC | 1 cut(s) | 86 |
| MboII | GAAGA | 1 cut(s) | 20 |
| MluCI | AATT | 2 cut(s) | 40, 102 |
| MseI | TTAA | 1 cut(s) | 101 |
| MspI | CCGG | 1 cut(s) | 110 |
| MspR9I | CCNGG | 2 cut(s) | 111, 134 |
| Mva1269I | GAATGC | 1 cut(s) | 52 |
| MvaI | CCWGG | 1 cut(s) | 134 |
| NciI | CCSGG | 1 cut(s) | 111 |
| NdeII | GATC | 1 cut(s) | 86 |
| NlaIII | CATG | 1 cut(s) | 71 |
| NspI | RCATGY | 1 cut(s) | 71 |
| PctI | GAATGC | 1 cut(s) | 52 |
| PfeI | GAWTC | 1 cut(s) | 137 |
| PfoI | TCCNGGA | 1 cut(s) | 132 |
| Psp6I | CCWGG | 1 cut(s) | 132 |
| PspFI | CCCAGC | 1 cut(s) | 121 |
| PspGI | CCWGG | 1 cut(s) | 132 |
| SaqAI | TTAA | 1 cut(s) | 101 |
| Sau3AI | GATC | 1 cut(s) | 86 |
| ScrFI | CCNGG | 2 cut(s) | 111, 134 |
| SetI | ASST | 1 cut(s) | 123 |
| SgeI | CNNG | 6 cut(s) | 80, 85, 90, 122, 123, 134 |
| Sse9I | AATT | 2 cut(s) | 40, 102 |
| StyD4I | CCNGG | 2 cut(s) | 109, 132 |
| TaaI | ACNGT | 1 cut(s) | 81 |
| TaqI | TCGA | 1 cut(s) | 20 |
| TasI | AATT | 2 cut(s) | 40, 102 |
| TfiI | GAWTC | 1 cut(s) | 137 |
| Tru1I | TTAA | 1 cut(s) | 101 |
| Tru9I | TTAA | 1 cut(s) | 101 |
| XceI | RCATGY | 1 cut(s) | 71 |