cyclic nucleotide-gated ion channel 20, chloroplastic
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 170 - 334 | 6e-39 | NB-ARC domain |
| AAA_22 | PF13401 | 187 - 275 | 9.6e-06 | AAA domain |
| LRR_14 | PF23598 | 517 - 734 | 5.1e-18 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 538 - 595 | 1.9e-08 | Leucine rich repeat |
| LRR_8 | PF13855 | 609 - 665 | 7.6e-08 | Leucine rich repeat |
| LRR_4 | PF12799 | 609 - 647 | 9.3e-06 | Leucine Rich repeats (2 copies) |
| LRR_RPS2 | PF23247 | 836 - 935 | 5.7e-11 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1215, 1824, 2004 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2504 |
| AbsI | CCTCGAGG | 1 cut(s) | 2258 |
| Acc65I | GGTACC | 1 cut(s) | 351 |
| AccB1I | GGYRCC | 2 cut(s) | 351, 478 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2751 |
| AciI | CCGC | 2 cut(s) | 1062, 1319 |
| AclI | AACGTT | 2 cut(s) | 1346, 1886 |
| AclWI | GGATC | 3 cut(s) | 658, 671, 2298 |
| AcoI | YGGCCR | 1 cut(s) | 313 |
| AcsI | RAATTY | 7 cut(s) | 50, 83, 530, 982, 1276, 1656, 2049 |
| AdeI | CACNNNGTG | 2 cut(s) | 866, 2751 |
| AfaI | GTAC | 3 cut(s) | 270, 353, 1268 |
| AfeI | AGCGCT | 1 cut(s) | 1125 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 921, 1811, 2293, 2751 |
| AflII | CTTAAG | 3 cut(s) | 215, 1238, 1774 |
| AflIII | ACRYGT | 2 cut(s) | 1986, 2300 |
| AhlI | ACTAGT | 1 cut(s) | 2402 |
| AjnI | CCWGG | 4 cut(s) | 315, 1830, 2286, 2919 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 824, 856, 2412, 2444 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2058, 2090 |
| Alw21I | GWGCWC | 4 cut(s) | 1613, 1819, 2038, 2438 |
| Alw26I | GTCTC | 4 cut(s) | 676, 1079, 1773, 2909 |
| AlwI | GGATC | 3 cut(s) | 658, 671, 2298 |
| Ama87I | CYCGRG | 3 cut(s) | 705, 2258, 2906 |
| Aor51HI | AGCGCT | 1 cut(s) | 1125 |
| AoxI | GGCC | 5 cut(s) | 313, 1977, 2254, 2353, 2742 |
| ApeKI | GCWGC | 6 cut(s) | 371, 520, 1509, 1710, 2178, 2825 |
| ApoI | RAATTY | 7 cut(s) | 50, 83, 530, 982, 1276, 1656, 2049 |
| AseI | ATTAAT | 3 cut(s) | 297, 401, 1328 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 83, 2679 |
| Asp718I | GGTACC | 1 cut(s) | 351 |
| AspLEI | GCGC | 1 cut(s) | 1126 |
| AspS9I | GGNCC | 1 cut(s) | 2168 |
| AsuC2I | CCSGG | 1 cut(s) | 1498 |
| AsuHPI | GGTGA | 4 cut(s) | 878, 1430, 2368, 2635 |
| AsuNHI | GCTAGC | 1 cut(s) | 1052 |
| AvaI | CYCGRG | 3 cut(s) | 705, 2258, 2906 |
| AvaII | GGWCC | 1 cut(s) | 2168 |
| BalI | TGGCCA | 1 cut(s) | 315 |
| BamHI | GGATCC | 1 cut(s) | 663 |
| BanI | GGYRCC | 2 cut(s) | 351, 478 |
| BanII | GRGCYC | 3 cut(s) | 1690, 1819, 2818 |
| BbsI | GAAGAC | 4 cut(s) | 596, 621, 1983, 2566 |
| Bbv12I | GWGCWC | 4 cut(s) | 1613, 1819, 2038, 2438 |
| BbvI | GCAGC | 6 cut(s) | 383, 532, 1496, 1722, 2165, 2837 |
| BceAI | ACGGC | 1 cut(s) | 899 |
| BciT130I | CCWGG | 4 cut(s) | 317, 1832, 2288, 2921 |
| BciVI | GTATCC | 2 cut(s) | 849, 2950 |
| BcnI | CCSGG | 1 cut(s) | 1498 |
| BcoDI | GTCTC | 4 cut(s) | 676, 1079, 1773, 2909 |
| BcuI | ACTAGT | 1 cut(s) | 2402 |
| BfaI | CTAG | 9 cut(s) | 176, 1037, 1053, 1409, 1751, 2090, 2403, 2511, 2795 |
| BfmI | CTRYAG | 2 cut(s) | 369, 2632 |
| BfoI | RGCGCY | 1 cut(s) | 1127 |
| BfrI | CTTAAG | 3 cut(s) | 215, 1238, 1774 |
| BfuI | GTATCC | 2 cut(s) | 849, 2950 |
| BglII | AGATCT | 1 cut(s) | 1903 |
| BisI | GCNGC | 6 cut(s) | 372, 521, 1510, 1711, 2179, 2826 |
| BlsI | GCNGC | 6 cut(s) | 373, 522, 1511, 1712, 2180, 2827 |
| Bme1390I | CCNGG | 5 cut(s) | 317, 1498, 1832, 2288, 2921 |
| Bme18I | GGWCC | 1 cut(s) | 2168 |
| BmeT110I | CYCGRG | 3 cut(s) | 705, 2258, 2906 |
| BmgT120I | GGNCC | 1 cut(s) | 2168 |
| BmiI | GGNNCC | 4 cut(s) | 353, 480, 665, 803 |
| BmrFI | CCNGG | 5 cut(s) | 317, 1498, 1832, 2288, 2921 |
| BmrI | ACTGGG | 1 cut(s) | 2357 |
| BmsI | GCATC | 9 cut(s) | 427, 1172, 1201, 1348, 1431, 1962, 2406, 2507, 2543 |
| BmtI | GCTAGC | 1 cut(s) | 1056 |
| BmuI | ACTGGG | 1 cut(s) | 2357 |
| BpiI | GAAGAC | 4 cut(s) | 596, 621, 1983, 2566 |
| BpmI | CTGGAG | 3 cut(s) | 608, 1814, 2471 |
| BpuEI | CTTGAG | 2 cut(s) | 1994, 2875 |
| BpuMI | CCSGG | 1 cut(s) | 1498 |
| BsaJI | CCNNGG | 8 cut(s) | 316, 849, 1980, 2112, 2171, 2286, 2490, 2521 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 789, 819 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 921, 1811, 2293, 2751 |
| Bse1I | ACTGG | 7 cut(s) | 275, 625, 1080, 1147, 1206, 1995, 2352 |
| Bse3DI | GCAATG | 1 cut(s) | 738 |
| BseBI | CCWGG | 4 cut(s) | 317, 1832, 2288, 2921 |
| BseDI | CCNNGG | 8 cut(s) | 316, 849, 1980, 2112, 2171, 2286, 2490, 2521 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 921, 1811, 2293, 2751 |
| BseMI | GCAATG | 1 cut(s) | 738 |
| BseMII | CTCAG | 6 cut(s) | 142, 705, 1617, 1971, 2216, 2824 |
| BseNI | ACTGG | 7 cut(s) | 275, 625, 1080, 1147, 1206, 1995, 2352 |
| BseRI | GAGGAG | 4 cut(s) | 263, 266, 1367, 1569 |
| BseXI | GCAGC | 6 cut(s) | 383, 532, 1496, 1722, 2165, 2837 |
| BseYI | CCCAGC | 2 cut(s) | 190, 1519 |
| BsgI | GTGCAG | 1 cut(s) | 2949 |
| BshFI | GGCC | 5 cut(s) | 315, 1979, 2256, 2355, 2744 |
| BshNI | GGYRCC | 2 cut(s) | 351, 478 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1613, 1819, 2038, 2438 |
| BsiHKCI | CYCGRG | 3 cut(s) | 705, 2258, 2906 |
| BsiSI | CCGG | 2 cut(s) | 476, 1497 |
| BslFI | GGGAC | 4 cut(s) | 1121, 2079, 2492, 2864 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 921, 1811, 2293, 2751 |
| BsmAI | GTCTC | 4 cut(s) | 676, 1079, 1773, 2909 |
| BsmFI | GGGAC | 4 cut(s) | 1121, 2079, 2492, 2864 |
| BsmI | GAATGC | 8 cut(s) | 742, 1003, 1064, 1141, 1156, 1427, 1530, 2827 |
| BsnI | GGCC | 5 cut(s) | 315, 1979, 2256, 2355, 2744 |
| BsoBI | CYCGRG | 3 cut(s) | 705, 2258, 2906 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1613, 1690, 1819, 2038, 2438, 2818 |
| Bsp143I | GATC | 8 cut(s) | 663, 888, 905, 1840, 1903, 2290, 2326, 2898 |
| Bsp19I | CCATGG | 1 cut(s) | 2490 |
| BspACI | CCGC | 2 cut(s) | 1062, 1319 |
| BspANI | GGCC | 5 cut(s) | 315, 1979, 2256, 2355, 2744 |
| BspCNI | CTCAG | 6 cut(s) | 141, 706, 1616, 1970, 2215, 2823 |
| BspLI | GGNNCC | 4 cut(s) | 353, 480, 665, 803 |
| BspMAI | CTGCAG | 2 cut(s) | 373, 2636 |
| BspOI | GCTAGC | 1 cut(s) | 1056 |
| BspPI | GGATC | 3 cut(s) | 658, 671, 2298 |
| BspT107I | GGYRCC | 2 cut(s) | 351, 478 |
| BspTI | CTTAAG | 3 cut(s) | 215, 1238, 1774 |
| BsrDI | GCAATG | 1 cut(s) | 738 |
| BsrI | ACTGG | 7 cut(s) | 275, 625, 1080, 1147, 1206, 1995, 2352 |
| BssECI | CCNNGG | 8 cut(s) | 316, 849, 1980, 2112, 2171, 2286, 2490, 2521 |
| BssMI | GATC | 8 cut(s) | 663, 888, 905, 1840, 1903, 2290, 2326, 2898 |
| BssT1I | CCWWGG | 5 cut(s) | 1980, 2112, 2171, 2490, 2521 |
| Bst2UI | CCWGG | 4 cut(s) | 317, 1832, 2288, 2921 |
| Bst4CI | ACNGT | 7 cut(s) | 801, 850, 1435, 1448, 1624, 1784, 2098 |
| Bst6I | CTCTTC | 4 cut(s) | 966, 1746, 1773, 2685 |
| BstAFI | CTTAAG | 3 cut(s) | 215, 1238, 1774 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 737, 998 |
| BstC8I | GCNNGC | 3 cut(s) | 1054, 1406, 2357 |
| BstDSI | CCRYGG | 2 cut(s) | 849, 2490 |
| BstH2I | RGCGCY | 1 cut(s) | 1127 |
| BstHHI | GCGC | 1 cut(s) | 1126 |
| BstKTI | GATC | 8 cut(s) | 666, 891, 908, 1843, 1906, 2293, 2329, 2901 |
| BstMAI | GTCTC | 4 cut(s) | 676, 1079, 1773, 2909 |
| BstMBI | GATC | 8 cut(s) | 663, 888, 905, 1840, 1903, 2290, 2326, 2898 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 132, 280, 520, 737, 998, 1525, 2187, 2800, 2822 |
| BstNI | CCWGG | 4 cut(s) | 317, 1832, 2288, 2921 |
| BstNSI | RCATGY | 4 cut(s) | 343, 1408, 1990, 2304 |
| BstSCI | CCNGG | 5 cut(s) | 315, 1496, 1830, 2286, 2919 |
| BstSFI | CTRYAG | 2 cut(s) | 369, 2632 |
| BstV1I | GCAGC | 6 cut(s) | 383, 532, 1496, 1722, 2165, 2837 |
| BstV2I | GAAGAC | 4 cut(s) | 596, 621, 1983, 2566 |
| BstX2I | RGATCY | 3 cut(s) | 663, 1903, 2290 |
| BstYI | RGATCY | 3 cut(s) | 663, 1903, 2290 |
| BsuI | GTATCC | 2 cut(s) | 849, 2950 |
| BsuRI | GGCC | 5 cut(s) | 315, 1979, 2256, 2355, 2744 |
| BtgI | CCRYGG | 2 cut(s) | 849, 2490 |
| BtsI | GCAGTG | 1 cut(s) | 2939 |
| BtsIMutI | CAGTG | 4 cut(s) | 1073, 1453, 2002, 2939 |
| Cac8I | GCNNGC | 3 cut(s) | 1054, 1406, 2357 |
| CfoI | GCGC | 1 cut(s) | 1126 |
| Cfr13I | GGNCC | 1 cut(s) | 2168 |
| Csp6I | GTAC | 3 cut(s) | 269, 352, 1267 |
| CviAII | CATG | 9 cut(s) | 55, 340, 430, 1405, 1879, 1987, 2207, 2301, 2491 |
| CviQI | GTAC | 3 cut(s) | 269, 352, 1267 |
| DpnI | GATC | 8 cut(s) | 665, 890, 907, 1842, 1905, 2292, 2328, 2900 |
| DpnII | GATC | 8 cut(s) | 663, 888, 905, 1840, 1903, 2290, 2326, 2898 |
| DraIII | CACNNNGTG | 2 cut(s) | 866, 2751 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2504 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2504 |
| EaeI | YGGCCR | 1 cut(s) | 313 |
| Eam1104I | CTCTTC | 4 cut(s) | 966, 1746, 1773, 2685 |
| EarI | CTCTTC | 4 cut(s) | 966, 1746, 1773, 2685 |
| Ecl136II | GAGCTC | 1 cut(s) | 1817 |
| Eco130I | CCWWGG | 5 cut(s) | 1980, 2112, 2171, 2490, 2521 |
| Eco147I | AGGCCT | 1 cut(s) | 1979 |
| Eco24I | GRGCYC | 3 cut(s) | 1690, 1819, 2818 |
| Eco32I | GATATC | 1 cut(s) | 1476 |
| Eco47I | GGWCC | 1 cut(s) | 2168 |
| Eco47III | AGCGCT | 1 cut(s) | 1125 |
| Eco53kI | GAGCTC | 1 cut(s) | 1817 |
| Eco88I | CYCGRG | 3 cut(s) | 705, 2258, 2906 |
| EcoICRI | GAGCTC | 1 cut(s) | 1817 |
| EcoRII | CCWGG | 4 cut(s) | 315, 1830, 2286, 2919 |
| EcoRV | GATATC | 1 cut(s) | 1476 |
| EcoT14I | CCWWGG | 5 cut(s) | 1980, 2112, 2171, 2490, 2521 |
| EcoT22I | ATGCAT | 1 cut(s) | 1427 |
| EcoT38I | GRGCYC | 3 cut(s) | 1690, 1819, 2818 |
| ErhI | CCWWGG | 5 cut(s) | 1980, 2112, 2171, 2490, 2521 |
| FaeI | CATG | 9 cut(s) | 58, 343, 433, 1408, 1882, 1990, 2210, 2304, 2494 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2412, 2444 |
| FaqI | GGGAC | 4 cut(s) | 1121, 2079, 2492, 2864 |
| FatI | CATG | 9 cut(s) | 54, 339, 429, 1404, 1878, 1986, 2206, 2300, 2490 |
| Fnu4HI | GCNGC | 6 cut(s) | 372, 521, 1510, 1711, 2179, 2826 |
| FriOI | GRGCYC | 3 cut(s) | 1690, 1819, 2818 |
| Fsp4HI | GCNGC | 6 cut(s) | 372, 521, 1510, 1711, 2179, 2826 |
| FspBI | CTAG | 9 cut(s) | 176, 1037, 1053, 1409, 1751, 2090, 2403, 2511, 2795 |
| GlaI | GCGC | 1 cut(s) | 1125 |
| GluI | GCNGC | 6 cut(s) | 372, 521, 1510, 1711, 2179, 2826 |
| GsaI | CCCAGC | 2 cut(s) | 194, 1523 |
| GsuI | CTGGAG | 3 cut(s) | 608, 1814, 2471 |
| HaeII | RGCGCY | 1 cut(s) | 1127 |
| HaeIII | GGCC | 5 cut(s) | 315, 1979, 2256, 2355, 2744 |
| HapII | CCGG | 2 cut(s) | 476, 1497 |
| HhaI | GCGC | 1 cut(s) | 1126 |
| Hin1II | CATG | 9 cut(s) | 58, 343, 433, 1408, 1882, 1990, 2210, 2304, 2494 |
| Hin6I | GCGC | 1 cut(s) | 1124 |
| HinP1I | GCGC | 1 cut(s) | 1124 |
| HincII | GTYRAC | 2 cut(s) | 1890, 2239 |
| HindII | GTYRAC | 2 cut(s) | 1890, 2239 |
| HindIII | AAGCTT | 1 cut(s) | 2801 |
| HpaI | GTTAAC | 1 cut(s) | 1890 |
| HpaII | CCGG | 2 cut(s) | 476, 1497 |
| HphI | GGTGA | 4 cut(s) | 878, 1430, 2368, 2635 |
| Hpy166II | GTNNAC | 4 cut(s) | 1070, 1890, 2239, 2497 |
| Hpy188I | TCNGA | 8 cut(s) | 498, 554, 963, 1021, 1553, 2122, 2326, 2813 |
| Hpy8I | GTNNAC | 4 cut(s) | 1070, 1890, 2239, 2497 |
| Hpy99I | CGWCG | 1 cut(s) | 2598 |
| HpyAV | CCTTC | 9 cut(s) | 106, 132, 173, 214, 549, 1743, 2024, 2590, 2631 |
| HpyCH4III | ACNGT | 7 cut(s) | 801, 850, 1435, 1448, 1624, 1784, 2098 |
| HpyCH4IV | ACGT | 5 cut(s) | 238, 1346, 1886, 2020, 2025 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 132, 280, 520, 737, 998, 1525, 2187, 2800, 2822 |
| HpySE526I | ACGT | 5 cut(s) | 238, 1346, 1886, 2020, 2025 |
| Hsp92II | CATG | 9 cut(s) | 58, 343, 433, 1408, 1882, 1990, 2210, 2304, 2494 |
| HspAI | GCGC | 1 cut(s) | 1124 |
| KpnI | GGTACC | 1 cut(s) | 355 |
| KspAI | GTTAAC | 1 cut(s) | 1890 |
| Kzo9I | GATC | 8 cut(s) | 663, 888, 905, 1840, 1903, 2290, 2326, 2898 |
| LmnI | GCTCC | 8 cut(s) | 627, 1176, 1616, 1814, 2033, 2175, 2433, 2452 |
| Lsp1109I | GCAGC | 6 cut(s) | 383, 532, 1496, 1722, 2165, 2837 |
| LweI | GCATC | 9 cut(s) | 427, 1172, 1201, 1348, 1431, 1962, 2406, 2507, 2543 |
| MaeI | CTAG | 9 cut(s) | 176, 1037, 1053, 1409, 1751, 2090, 2403, 2511, 2795 |
| MaeII | ACGT | 5 cut(s) | 238, 1346, 1886, 2020, 2025 |
| MaeIII | GTNAC | 4 cut(s) | 2021, 2296, 2390, 2627 |
| MalI | GATC | 8 cut(s) | 665, 890, 907, 1842, 1905, 2292, 2328, 2900 |
| MboI | GATC | 8 cut(s) | 663, 888, 905, 1840, 1903, 2290, 2326, 2898 |
| MfeI | CAATTG | 3 cut(s) | 1047, 1080, 2467 |
| MflI | RGATCY | 3 cut(s) | 663, 1903, 2290 |
| MhlI | GDGCHC | 6 cut(s) | 1613, 1690, 1819, 2038, 2438, 2818 |
| MlsI | TGGCCA | 1 cut(s) | 315 |
| MluNI | TGGCCA | 1 cut(s) | 315 |
| MlyI | GAGTC | 8 cut(s) | 326, 1025, 1364, 1391, 2111, 2455, 2563, 2927 |
| MmeI | TCCRAC | 2 cut(s) | 1518, 1638 |
| Mox20I | TGGCCA | 1 cut(s) | 315 |
| Mph1103I | ATGCAT | 1 cut(s) | 1427 |
| MroXI | GAANNNNTTC | 2 cut(s) | 83, 2679 |
| MscI | TGGCCA | 1 cut(s) | 315 |
| MslI | CAYNNNNRTG | 1 cut(s) | 297 |
| Msp20I | TGGCCA | 1 cut(s) | 315 |
| MspA1I | CMGCKG | 2 cut(s) | 523, 1509 |
| MspCI | CTTAAG | 3 cut(s) | 215, 1238, 1774 |
| MspI | CCGG | 2 cut(s) | 476, 1497 |
| MspR9I | CCNGG | 5 cut(s) | 317, 1498, 1832, 2288, 2921 |
| MunI | CAATTG | 3 cut(s) | 1047, 1080, 2467 |
| Mva1269I | GAATGC | 8 cut(s) | 742, 1003, 1064, 1141, 1156, 1427, 1530, 2827 |
| MvaI | CCWGG | 4 cut(s) | 317, 1832, 2288, 2921 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 132, 280, 520, 737, 998, 1525, 2187, 2800, 2822 |
| NciI | CCSGG | 1 cut(s) | 1498 |
| NcoI | CCATGG | 1 cut(s) | 2490 |
| NdeII | GATC | 8 cut(s) | 663, 888, 905, 1840, 1903, 2290, 2326, 2898 |
| NheI | GCTAGC | 1 cut(s) | 1052 |
| NlaIII | CATG | 9 cut(s) | 58, 343, 433, 1408, 1882, 1990, 2210, 2304, 2494 |
| NlaIV | GGNNCC | 4 cut(s) | 353, 480, 665, 803 |
| NmuCI | GTSAC | 3 cut(s) | 2296, 2390, 2627 |
| NsiI | ATGCAT | 1 cut(s) | 1427 |
| NspI | RCATGY | 4 cut(s) | 343, 1408, 1990, 2304 |
| PaeI | GCATGC | 1 cut(s) | 1408 |
| PaeR7I | CTCGAG | 3 cut(s) | 705, 2258, 2906 |
| PceI | AGGCCT | 1 cut(s) | 1979 |
| PciI | ACATGT | 2 cut(s) | 1986, 2300 |
| PctI | GAATGC | 8 cut(s) | 742, 1003, 1064, 1141, 1156, 1427, 1530, 2827 |
| PdmI | GAANNNNTTC | 2 cut(s) | 83, 2679 |
| PfeI | GAWTC | 6 cut(s) | 410, 1234, 1695, 1702, 2183, 2916 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2751 |
| PkrI | GCNGC | 6 cut(s) | 373, 522, 1511, 1712, 2180, 2827 |
| PleI | GAGTC | 8 cut(s) | 326, 1024, 1363, 1391, 2111, 2455, 2563, 2927 |
| PpsI | GAGTC | 8 cut(s) | 326, 1024, 1363, 1391, 2111, 2455, 2563, 2927 |
| PscI | ACATGT | 2 cut(s) | 1986, 2300 |
| PshBI | ATTAAT | 3 cut(s) | 297, 401, 1328 |
| PsiI | TTATAA | 3 cut(s) | 1215, 1824, 2004 |
| Psp124BI | GAGCTC | 1 cut(s) | 1819 |
| Psp1406I | AACGTT | 2 cut(s) | 1346, 1886 |
| Psp6I | CCWGG | 4 cut(s) | 315, 1830, 2286, 2919 |
| PspFI | CCCAGC | 2 cut(s) | 190, 1519 |
| PspGI | CCWGG | 4 cut(s) | 315, 1830, 2286, 2919 |
| PspN4I | GGNNCC | 4 cut(s) | 353, 480, 665, 803 |
| PspPI | GGNCC | 1 cut(s) | 2168 |
| PspXI | VCTCGAGB | 1 cut(s) | 2258 |
| PstI | CTGCAG | 2 cut(s) | 373, 2636 |
| PsuI | RGATCY | 3 cut(s) | 663, 1903, 2290 |
| PvuII | CAGCTG | 2 cut(s) | 523, 1509 |
| RsaI | GTAC | 3 cut(s) | 270, 353, 1268 |
| RsaNI | GTAC | 3 cut(s) | 269, 352, 1267 |
| RseI | CAYNNNNRTG | 1 cut(s) | 297 |
| SacI | GAGCTC | 1 cut(s) | 1819 |
| SatI | GCNGC | 6 cut(s) | 372, 521, 1510, 1711, 2179, 2826 |
| Sau3AI | GATC | 8 cut(s) | 663, 888, 905, 1840, 1903, 2290, 2326, 2898 |
| Sau96I | GGNCC | 1 cut(s) | 2168 |
| SchI | GAGTC | 8 cut(s) | 326, 1025, 1364, 1391, 2111, 2455, 2563, 2927 |
| ScrFI | CCNGG | 5 cut(s) | 317, 1498, 1832, 2288, 2921 |
| SduI | GDGCHC | 6 cut(s) | 1613, 1690, 1819, 2038, 2438, 2818 |
| SfaNI | GCATC | 9 cut(s) | 427, 1172, 1201, 1348, 1431, 1962, 2406, 2507, 2543 |
| SfcI | CTRYAG | 2 cut(s) | 369, 2632 |
| Sfr274I | CTCGAG | 3 cut(s) | 705, 2258, 2906 |
| SinI | GGWCC | 1 cut(s) | 2168 |
| SlaI | CTCGAG | 3 cut(s) | 705, 2258, 2906 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 297 |
| SmlI | CTYRAG | 8 cut(s) | 215, 705, 1238, 1774, 1973, 2258, 2854, 2906 |
| SmoI | CTYRAG | 8 cut(s) | 215, 705, 1238, 1774, 1973, 2258, 2854, 2906 |
| SpeI | ACTAGT | 1 cut(s) | 2402 |
| SphI | GCATGC | 1 cut(s) | 1408 |
| SseBI | AGGCCT | 1 cut(s) | 1979 |
| SsiI | CCGC | 2 cut(s) | 1062, 1319 |
| SspI | AATATT | 1 cut(s) | 1388 |
| SspMI | CTAG | 9 cut(s) | 176, 1037, 1053, 1409, 1751, 2090, 2403, 2511, 2795 |
| SstI | GAGCTC | 1 cut(s) | 1819 |
| StuI | AGGCCT | 1 cut(s) | 1979 |
| StyD4I | CCNGG | 5 cut(s) | 315, 1496, 1830, 2286, 2919 |
| StyI | CCWWGG | 5 cut(s) | 1980, 2112, 2171, 2490, 2521 |
| TaaI | ACNGT | 7 cut(s) | 801, 850, 1435, 1448, 1624, 1784, 2098 |
| TaiI | ACGT | 5 cut(s) | 241, 1349, 1889, 2023, 2028 |
| TaqI | TCGA | 8 cut(s) | 62, 234, 706, 904, 1675, 2259, 2593, 2907 |
| TatI | WGTACW | 1 cut(s) | 268 |
| TfiI | GAWTC | 6 cut(s) | 410, 1234, 1695, 1702, 2183, 2916 |
| TscAI | CASTG | 4 cut(s) | 1080, 1453, 2002, 2946 |
| TseFI | GTSAC | 3 cut(s) | 2296, 2390, 2627 |
| TseI | GCWGC | 6 cut(s) | 371, 520, 1509, 1710, 2178, 2825 |
| Tsp45I | GTSAC | 3 cut(s) | 2296, 2390, 2627 |
| TspDTI | ATGAA | 8 cut(s) | 43, 281, 749, 1251, 1551, 1583, 2061, 2657 |
| TspGWI | ACGGA | 1 cut(s) | 1009 |
| TspRI | CASTG | 4 cut(s) | 1080, 1453, 2002, 2946 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2751 |
| Vha464I | CTTAAG | 3 cut(s) | 215, 1238, 1774 |
| VpaK11BI | GGWCC | 1 cut(s) | 2168 |
| VspI | ATTAAT | 3 cut(s) | 297, 401, 1328 |
| XapI | RAATTY | 7 cut(s) | 50, 83, 530, 982, 1276, 1656, 2049 |
| XceI | RCATGY | 4 cut(s) | 343, 1408, 1990, 2304 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2344 |
| XhoI | CTCGAG | 3 cut(s) | 705, 2258, 2906 |
| XmnI | GAANNNNTTC | 2 cut(s) | 83, 2679 |
| XspI | CTAG | 9 cut(s) | 176, 1037, 1053, 1409, 1751, 2090, 2403, 2511, 2795 |
| Zsp2I | ATGCAT | 1 cut(s) | 1427 |