Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

18678228 .. 18679917

Gene Structure 1690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCAGAAATGTGAAATTATGCTCAATGATTTGATTGGAGAAGTCCCTAAATGTACCTGGGTCGTTGATCAACTACTCTCTGATTGTGCAAAGAGATTTAATGAAATCAAGACCCCTCGTAAGCTATTGTGGAAGAAGAATCTTGGTACTGTCAAGTTGGAATTGCAATTTGATGATAGAGAAATGCAGTTCATGGTTGCTCCTCTTCATGCAGCAATTATAATGCAATTTCAAAATCAGAAAAGCTGGACCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATACACTTAATTGCAGGATCAATTTTTGGATAAGCAAGGACTGCTTCCGGTTAGGACAACTTGGTGAGGCACAAAGAAGTTATTATGGGTTTAGTTCAGTTCATAGGGCTGTGAGTCCTGTGACAATGAGTTACAATCTTGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

145

Amino Acids

16.69

Weight (kDa)

8.62

Isoelectric Point (pI)

22.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin_AB	PF26557	25 - 101	9.7e-10	Cullin alpha+beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AclWI	GGATC	1 cut(s)	314
AfaI	GTAC	2 cut(s)	55, 148
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	3 cut(s)	124, 246, 269
AluI	AGCT	3 cut(s)	124, 246, 269
AlwI	GGATC	1 cut(s)	314
ApeKI	GCWGC	3 cut(s)	212, 266, 269
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	224, 256, 278
BciT130I	CCWGG	1 cut(s)	58
BclI	TGATCA	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	270
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	3 cut(s)	213, 267, 270
BlsI	GCNGC	3 cut(s)	214, 268, 271
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	224, 256, 278
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	67, 259, 306
BspLI	GGNNCC	1 cut(s)	282
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	67, 259, 306
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstKTI	GATC	3 cut(s)	70, 262, 309
BstMBI	GATC	3 cut(s)	67, 259, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	3 cut(s)	224, 256, 278
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	54, 147
CviAII	CATG	2 cut(s)	193, 209
CviJI	RGCY	4 cut(s)	124, 246, 269, 398
CviKI_1	RGCY	4 cut(s)	124, 246, 269, 398
CviQI	GTAC	2 cut(s)	54, 147
DpnI	GATC	3 cut(s)	69, 261, 308
DpnII	GATC	3 cut(s)	67, 259, 306
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	56
FaeI	CATG	2 cut(s)	196, 212
FaiI	YATR	6 cut(s)	20, 194, 210, 221, 375, 393
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	2 cut(s)	192, 208
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	213, 267, 270
Fsp4HI	GCNGC	3 cut(s)	213, 267, 270
GluI	GCNGC	3 cut(s)	213, 267, 270
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	2 cut(s)	196, 212
HinfI	GANTC	2 cut(s)	139, 403
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	1 cut(s)	365
Hpy188I	TCNGA	2 cut(s)	82, 240
Hpy188III	TCNNGA	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	9 cut(s)	4, 89, 166, 187, 212, 226, 266, 272, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	196, 212
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	67, 259, 306
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	43, 70, 232, 289, 350, 420
Lsp1109I	GCAGC	3 cut(s)	224, 256, 278
MaeIII	GTNAC	2 cut(s)	409, 419
MalI	GATC	3 cut(s)	69, 261, 308
MboI	GATC	3 cut(s)	67, 259, 306
MboII	GAAGA	3 cut(s)	145, 148, 197
MflI	RGATCY	1 cut(s)	259
MluCI	AATT	7 cut(s)	15, 161, 167, 216, 227, 298, 310
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	4 cut(s)	126, 213, 262, 349
MseI	TTAA	2 cut(s)	99, 297
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	330
NdeII	GATC	3 cut(s)	67, 259, 306
NlaIII	CATG	2 cut(s)	196, 212
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	214, 268, 271
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PsiI	TTATAA	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	55, 148
RsaNI	GTAC	2 cut(s)	54, 147
SaqAI	TTAA	2 cut(s)	99, 297
SatI	GCNGC	3 cut(s)	213, 267, 270
Sau3AI	GATC	3 cut(s)	67, 259, 306
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	5 cut(s)	59, 126, 248, 254, 271
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	7 cut(s)	15, 161, 167, 216, 227, 298, 310
StyD4I	CCNGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	151
TasI	AATT	7 cut(s)	15, 161, 167, 216, 227, 298, 310
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	99, 297
Tru9I	TTAA	2 cut(s)	99, 297
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	3 cut(s)	212, 266, 269
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	4 cut(s)	117, 181, 197, 380
VpaK11BI	GGWCC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.