Rh2BG241400

cyclic nucleotide-gated ion channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
24092689 .. 24097125
4437 bp
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UTR
Exon/CDS
Intron
Rh2BG241400.1

Sequence Viewer

Length: 246 bp
ATGCATCACAATATAAATGACTCAACTGAAAATATAAAAGCTCTTGGCCGGAGAAGGTTAGAAATATCACTGAGACGTCGTGACGTTGAGCAGTGGATGAGCCGTAGACGTTTGCTAGATGAACTAGGGAGGTTATTCCACAAGCAATATGCACTAGATATGGACTTGCTATGGGTTCCAACCAATATGGTATTACTTCGATTACTTCAGAAGGACTCAAGCACAGAGTCTTTGAGACATTACTAG

Protein Analysis

81

Amino Acids

9.89

Weight (kDa)

10.12

Isoelectric Point (pI)

131.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 76
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 67, 229
AoxI GGCC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 67, 229
BfaI CTAG 4 cut(s) 116, 125, 155, 244
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 76
BseGI GGATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 62
BshFI GGCC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 67, 229
BsmBI CGTCTC 1 cut(s) 67
BsnI GGCC 1 cut(s) 48
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 177
BssNI GRCGYC 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 102
BstMAI GTCTC 2 cut(s) 67, 229
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 102
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 2 cut(s) 68, 98
CviJI RGCY 3 cut(s) 41, 48, 102
CviKI_1 RGCY 3 cut(s) 41, 48, 102
DdeI CTNAG 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 67
FaiI YATR 6 cut(s) 14, 35, 150, 161, 172, 188
FblI GTMKAC 1 cut(s) 106
FokI GGATG 1 cut(s) 109
FspBI CTAG 4 cut(s) 116, 125, 155, 244
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 76
HinfI GANTC 3 cut(s) 20, 215, 227
HpaII CCGG 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 2 cut(s) 48, 205
HpyCH4IV ACGT 3 cut(s) 76, 84, 109
HpyCH4V TGCA 2 cut(s) 4, 152
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 3 cut(s) 76, 84, 109
Hsp92I GRCGYC 1 cut(s) 76
LpnPI CCDG 1 cut(s) 62
LweI GCATC 1 cut(s) 13
MaeI CTAG 4 cut(s) 116, 125, 155, 244
MaeII ACGT 3 cut(s) 76, 84, 109
MaeIII GTNAC 1 cut(s) 80
MlyI GAGTC 3 cut(s) 14, 209, 236
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 1 cut(s) 123
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 6
PleI GAGTC 3 cut(s) 14, 209, 235
PpsI GAGTC 3 cut(s) 14, 209, 235
PspN4I GGNNCC 1 cut(s) 177
SchI GAGTC 3 cut(s) 14, 209, 236
SetI ASST 6 cut(s) 43, 59, 79, 87, 112, 134
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 9 cut(s) 56, 61, 92, 128, 137, 154, 167, 178, 231
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SspMI CTAG 4 cut(s) 116, 125, 155, 244
TaiI ACGT 3 cut(s) 79, 87, 112
TaqI TCGA 1 cut(s) 199
TscAI CASTG 2 cut(s) 75, 98
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 2 cut(s) 75, 98
XmiI GTMKAC 1 cut(s) 106
XspI CTAG 4 cut(s) 116, 125, 155, 244
ZraI GACGTC 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.