Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

49228821 .. 49230317

Gene Structure 1497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0318000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCGAGCAGACCGGAAGACCAGCTTTCTCCCCGGGAGTCTTATCCTCCAACCACAACCGTCCCCGACATTCACGCCTCGCAACCACCGCCGCCGCCTCCACCGTCGGAGGAGGACGCCAAGAAATGGGGGACCCACATAATGGGAACTCCCGCAGCTCCGAACGTCCACCCGGATAACCAGAAAGCTGCTCTATGGAAAGCCGCCGACCACCAGCAAATCCCGCAGCAACCGCTCGAAACACAACAGCAACAACCGCCGTACGTTCAGTACTCTCCGATCAACAAGCCGACCAACAACCCCTTCGAGCCGGTGATCAACCTCTTCAACTCGTGGGGGAACAAGGCCGAGACCATCGCCCGGAACATCTGGCACAACCTCAAAACAGGGCCCTCTGTTTCCGAGACCGCCTGGGGAAAAGTGAACTTGACGGCCAAGGCGATCACGAAAGGCGGGTTTGAGTCTCTGTTTAAGCAGATTTTCGCTACTGATCCCAACGAGAGGTTGAAGAAGACTTTCGCTTGCTATCTTTCCACTTCTACCGGACCTGTGGCCGGGACTCTGTATCTGTCGACGGCAAGAATCGGTTTTTGCAGCGACCGGCCGTTGACTTTTACTGCTCCGTCTGGACAATCAACTTGGAGCTACTACAAGGTGATGATACCTATGACGAATGTAGGGACAGTGAATCCTGTGGTGATTACGGAGACCCCGACGCCGGAGAAGTACCTTCAGATTGTCACCACCGATGGACATGATTTCTGGTTTATGGGGTTTGTTAACTTCGAGAAAGCTTCGCATCACGTACTAGACAGTGTGTCGAATTTCAGAGCAGTTGGGACCAATGAAGTGCAACAAGTGCAATCTGTTGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

292

Amino Acids

32.32

Weight (kDa)

6.71

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	156 - 265	1.4e-14	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	126, 142
AccBSI	CCGCTC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	572
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	3 cut(s)	432, 552, 602
AcsI	RAATTY	1 cut(s)	823
AcuI	CTGAAG	1 cut(s)	716
AcyI	GRCGYC	2 cut(s)	117, 716
AfaI	GTAC	4 cut(s)	263, 272, 728, 807
AfiI	CCNNNNNNNGG	6 cut(s)	126, 142, 360, 501, 554, 718
AgsI	TTSAA	2 cut(s)	328, 508
AhdI	GACNNNNNGTC	1 cut(s)	817
AjnI	CCWGG	1 cut(s)	410
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	5 cut(s)	25, 158, 188, 645, 794
AluI	AGCT	5 cut(s)	25, 158, 188, 645, 794
Alw26I	GTCTC	4 cut(s)	344, 398, 468, 701
AlwI	GGATC	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	5 cut(s)	345, 389, 432, 552, 602
ApaI	GGGCCC	1 cut(s)	393
ApeKI	GCWGC	4 cut(s)	155, 188, 226, 594
ApoI	RAATTY	1 cut(s)	823
Asp700I	GAANNNNTTC	1 cut(s)	515
AspS9I	GGNCC	5 cut(s)	132, 389, 390, 545, 840
AsuC2I	CCSGG	5 cut(s)	34, 35, 173, 361, 556
AsuHPI	GGTGA	4 cut(s)	325, 667, 709, 733
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	3 cut(s)	132, 545, 840
BaeGI	GKGCMC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	331
BbsI	GAAGAC	2 cut(s)	24, 518
BbvI	GCAGC	4 cut(s)	167, 175, 238, 606
BccI	CCATC	2 cut(s)	362, 743
BceAI	ACGGC	4 cut(s)	244, 447, 589, 591
BciT130I	CCWGG	1 cut(s)	412
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	5 cut(s)	34, 35, 173, 361, 556
BcoDI	GTCTC	4 cut(s)	344, 398, 468, 701
BfaI	CTAG	1 cut(s)	809
BisI	GCNGC	7 cut(s)	92, 95, 156, 189, 204, 227, 595
BlsI	GCNGC	7 cut(s)	93, 96, 157, 190, 205, 228, 596
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	6 cut(s)	34, 35, 173, 361, 412, 556
Bme18I	GGWCC	3 cut(s)	132, 545, 840
BmeRI	GACNNNNNGTC	1 cut(s)	817
BmeT110I	CYCGRG	1 cut(s)	33
BmgT120I	GGNCC	5 cut(s)	132, 389, 390, 545, 840
BmiI	GGNNCC	4 cut(s)	133, 134, 391, 841
BmrFI	CCNGG	6 cut(s)	34, 35, 173, 361, 412, 556
BmsI	GCATC	1 cut(s)	808
BpiI	GAAGAC	2 cut(s)	24, 518
BpuMI	CCSGG	5 cut(s)	34, 35, 173, 361, 556
BsaAI	YACGTR	1 cut(s)	805
BsaHI	GRCGYC	2 cut(s)	117, 716
BsaI	GGTCTC	3 cut(s)	344, 398, 701
BsaJI	CCNNGG	4 cut(s)	32, 33, 411, 435
BsaWI	WCCGGW	2 cut(s)	13, 542
Bsc4I	CCNNNNNNNGG	6 cut(s)	126, 142, 360, 501, 554, 718
Bse118I	RCCGGY	2 cut(s)	310, 600
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	4 cut(s)	32, 33, 411, 435
BseLI	CCNNNNNNNGG	6 cut(s)	126, 142, 360, 501, 554, 718
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	393
BseX3I	CGGCCG	1 cut(s)	602
BseXI	GCAGC	4 cut(s)	167, 175, 238, 606
Bsh1285I	CGRYCG	2 cut(s)	601, 605
BshFI	GGCC	5 cut(s)	347, 391, 434, 554, 604
BsiEI	CGRYCG	2 cut(s)	601, 605
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	9 cut(s)	14, 34, 173, 311, 361, 543, 555, 601, 719
BsiWI	CGTACG	1 cut(s)	261
BslFI	GGGAC	5 cut(s)	47, 145, 571, 694, 853
BslI	CCNNNNNNNGG	6 cut(s)	126, 142, 360, 501, 554, 718
BsmAI	GTCTC	4 cut(s)	344, 398, 468, 701
BsmFI	GGGAC	5 cut(s)	47, 145, 571, 694, 853
BsnI	GGCC	5 cut(s)	347, 391, 434, 554, 604
Bso31I	GGTCTC	3 cut(s)	344, 398, 701
BsoBI	CYCGRG	1 cut(s)	33
Bsp120I	GGGCCC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	4 cut(s)	279, 315, 441, 490
BspANI	GGCC	5 cut(s)	347, 391, 434, 554, 604
BspLI	GGNNCC	4 cut(s)	133, 134, 391, 841
BspPI	GGATC	1 cut(s)	485
BspTNI	GGTCTC	3 cut(s)	344, 398, 701
BsrBI	CCGCTC	1 cut(s)	235
BsrFI	RCCGGY	2 cut(s)	310, 600
BssAI	RCCGGY	2 cut(s)	310, 600
BssECI	CCNNGG	4 cut(s)	32, 33, 411, 435
BssMI	GATC	4 cut(s)	279, 315, 441, 490
BssNI	GRCGYC	2 cut(s)	117, 716
BssSI	CACGAG	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	4 cut(s)	61, 105, 685, 815
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	2 cut(s)	117, 716
BstAPI	GCANNNNNTGC	1 cut(s)	859
BstBAI	YACGTR	1 cut(s)	805
BstC8I	GCNNGC	1 cut(s)	523
BstKTI	GATC	4 cut(s)	282, 318, 444, 493
BstMAI	GTCTC	4 cut(s)	344, 398, 468, 701
BstMBI	GATC	4 cut(s)	279, 315, 441, 490
BstMCI	CGRYCG	2 cut(s)	601, 605
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 223, 232, 256, 859
BstNI	CCWGG	1 cut(s)	412
BstSCI	CCNGG	6 cut(s)	32, 33, 171, 359, 410, 554
BstSLI	GKGCMC	1 cut(s)	393
BstV1I	GCAGC	4 cut(s)	167, 175, 238, 606
BstV2I	GAAGAC	2 cut(s)	24, 518
BstZI	CGGCCG	1 cut(s)	602
BsuRI	GGCC	5 cut(s)	347, 391, 434, 554, 604
BtgZI	GCGATG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	690, 820
Cac8I	GCNNGC	1 cut(s)	523
Cfr10I	RCCGGY	2 cut(s)	310, 600
Cfr13I	GGNCC	5 cut(s)	132, 389, 390, 545, 840
Cfr9I	CCCGGG	1 cut(s)	33
CseI	GACGC	2 cut(s)	125, 724
Csp6I	GTAC	4 cut(s)	262, 271, 727, 806
CviAII	CATG	1 cut(s)	755
CviQI	GTAC	4 cut(s)	262, 271, 727, 806
DpnI	GATC	4 cut(s)	281, 317, 443, 492
DpnII	GATC	4 cut(s)	279, 315, 441, 490
DriI	GACNNNNNGTC	1 cut(s)	817
EaeI	YGGCCR	3 cut(s)	432, 552, 602
EagI	CGGCCG	1 cut(s)	602
Eam1104I	CTCTTC	1 cut(s)	329
Eam1105I	GACNNNNNGTC	1 cut(s)	817
EarI	CTCTTC	1 cut(s)	329
EclXI	CGGCCG	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	3 cut(s)	344, 398, 701
Eco47I	GGWCC	3 cut(s)	132, 545, 840
Eco52I	CGGCCG	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	716
Eco88I	CYCGRG	1 cut(s)	33
EcoO109I	RGGNCCY	3 cut(s)	132, 389, 390
EcoRII	CCWGG	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	1 cut(s)	758
FaiI	YATR	5 cut(s)	140, 196, 668, 756, 770
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	5 cut(s)	47, 145, 571, 694, 853
FatI	CATG	1 cut(s)	754
FauI	CCCGC	3 cut(s)	160, 231, 446
FbaI	TGATCA	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	572
Fnu4HI	GCNGC	7 cut(s)	92, 95, 156, 189, 204, 227, 595
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	7 cut(s)	92, 95, 156, 189, 204, 227, 595
FspBI	CTAG	1 cut(s)	809
GluI	GCNGC	7 cut(s)	92, 95, 156, 189, 204, 227, 595
HaeIII	GGCC	5 cut(s)	347, 391, 434, 554, 604
HapII	CCGG	9 cut(s)	14, 34, 173, 311, 361, 543, 555, 601, 719
HgaI	GACGC	2 cut(s)	125, 724
Hin1I	GRCGYC	2 cut(s)	117, 716
Hin1II	CATG	1 cut(s)	758
HincII	GTYRAC	3 cut(s)	573, 609, 781
HindII	GTYRAC	3 cut(s)	573, 609, 781
HindIII	AAGCTT	1 cut(s)	792
HinfI	GANTC	5 cut(s)	38, 461, 559, 582, 688
HpaI	GTTAAC	1 cut(s)	781
HpaII	CCGG	9 cut(s)	14, 34, 173, 311, 361, 543, 555, 601, 719
HphI	GGTGA	4 cut(s)	325, 667, 709, 733
Hpy166II	GTNNAC	5 cut(s)	169, 424, 573, 609, 781
Hpy188I	TCNGA	6 cut(s)	109, 162, 279, 403, 735, 830
Hpy188III	TCNNGA	3 cut(s)	445, 627, 787
Hpy8I	GTNNAC	5 cut(s)	169, 424, 573, 609, 781
Hpy99I	CGWCG	3 cut(s)	109, 577, 718
HpyAV	CCTTC	2 cut(s)	313, 740
HpyCH4III	ACNGT	4 cut(s)	61, 105, 685, 815
HpyCH4IV	ACGT	3 cut(s)	165, 264, 804
HpyCH4V	TGCA	3 cut(s)	594, 853, 862
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 223, 232, 256, 859
HpySE526I	ACGT	3 cut(s)	165, 264, 804
Hsp92I	GRCGYC	2 cut(s)	117, 716
Hsp92II	CATG	1 cut(s)	758
KflI	GGGWCCC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	315
KspAI	GTTAAC	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	279, 315, 441, 490
LmnI	GCTCC	3 cut(s)	163, 625, 642
Lsp1109I	GCAGC	4 cut(s)	167, 175, 238, 606
LweI	GCATC	1 cut(s)	808
MaeI	CTAG	1 cut(s)	809
MaeII	ACGT	3 cut(s)	165, 264, 804
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	4 cut(s)	281, 317, 443, 492
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	4 cut(s)	279, 315, 441, 490
MboII	GAAGA	4 cut(s)	29, 316, 520, 523
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	1 cut(s)	823
MlyI	GAGTC	3 cut(s)	47, 470, 553
MmeI	TCCRAC	2 cut(s)	74, 87
MnlI	CCTC	9 cut(s)	57, 88, 103, 106, 108, 332, 389, 403, 495
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	2 cut(s)	471, 780
MspI	CCGG	9 cut(s)	14, 34, 173, 311, 361, 543, 555, 601, 719
MspR9I	CCNGG	6 cut(s)	34, 35, 173, 361, 412, 556
MvaI	CCWGG	1 cut(s)	412
MwoI	GCNNNNNNNGC	5 cut(s)	88, 223, 232, 256, 859
NciI	CCSGG	5 cut(s)	34, 35, 173, 361, 556
NdeII	GATC	4 cut(s)	279, 315, 441, 490
NlaIII	CATG	1 cut(s)	758
NlaIV	GGNNCC	4 cut(s)	133, 134, 391, 841
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	739
PcsI	WCGNNNNNNNCGW	2 cut(s)	437, 710
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	2 cut(s)	582, 688
Pfl23II	CGTACG	1 cut(s)	261
PflMI	CCANNNNNTGG	2 cut(s)	126, 142
PkrI	GCNGC	7 cut(s)	93, 96, 157, 190, 205, 228, 596
PleI	GAGTC	3 cut(s)	46, 469, 553
PpsI	GAGTC	3 cut(s)	46, 469, 553
Ppu21I	YACGTR	1 cut(s)	805
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	410
PspLI	CGTACG	1 cut(s)	261
PspN4I	GGNNCC	4 cut(s)	133, 134, 391, 841
PspOMI	GGGCCC	1 cut(s)	389
PspPI	GGNCC	5 cut(s)	132, 389, 390, 545, 840
PspPPI	RGGWCCY	1 cut(s)	132
RsaI	GTAC	4 cut(s)	263, 272, 728, 807
RsaNI	GTAC	4 cut(s)	262, 271, 727, 806
SalI	GTCGAC	1 cut(s)	571
SaqAI	TTAA	2 cut(s)	471, 780
SatI	GCNGC	7 cut(s)	92, 95, 156, 189, 204, 227, 595
Sau3AI	GATC	4 cut(s)	279, 315, 441, 490
Sau96I	GGNCC	5 cut(s)	132, 389, 390, 545, 840
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	3 cut(s)	47, 470, 553
ScrFI	CCNGG	6 cut(s)	34, 35, 173, 361, 412, 556
SduI	GDGCHC	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	808
SinI	GGWCC	3 cut(s)	132, 545, 840
SmaI	CCCGGG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	823
SspMI	CTAG	1 cut(s)	809
StyD4I	CCNGG	6 cut(s)	32, 33, 171, 359, 410, 554
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	4 cut(s)	61, 105, 685, 815
TaiI	ACGT	3 cut(s)	168, 267, 807
TaqI	TCGA	6 cut(s)	5, 237, 306, 572, 786, 821
TasI	AATT	1 cut(s)	823
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	3 cut(s)	94, 97, 206
TfiI	GAWTC	2 cut(s)	582, 688
Tru1I	TTAA	2 cut(s)	471, 780
Tru9I	TTAA	2 cut(s)	471, 780
TscAI	CASTG	2 cut(s)	690, 820
TseFI	GTSAC	1 cut(s)	739
TseI	GCWGC	4 cut(s)	155, 188, 226, 594
Tsp45I	GTSAC	1 cut(s)	739
TspDTI	ATGAA	1 cut(s)	861
TspGWI	ACGGA	2 cut(s)	612, 719
TspMI	CCCGGG	1 cut(s)	33
TspRI	CASTG	2 cut(s)	690, 820
Van91I	CCANNNNNTGG	2 cut(s)	126, 142
VpaK11BI	GGWCC	3 cut(s)	132, 545, 840
XapI	RAATTY	1 cut(s)	823
XmaI	CCCGGG	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	1 cut(s)	809
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.