Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

4200126 .. 4200401

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0030200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAAAATGCATTGGGTGCAACAGATGTTAATGTCGAGAATTTTGATTTGGAATTGGATTGGAAACCTAGAAAAGGAATGAAGTTTGATTCTGAACAAGCAACTTATGACTTCTACAATAGATATGGAGGAAAAAAGGGGGTTAGTATTCAAAGGGAGAATCATGCTAAGAATAAGAAAACTGGTGAAATCACTTTAAGAGTATTTGTTTGCTATAAGGAAGGTAATCGATCCAAAGATAAGAGGGATTACATGACTAGAAAACCCAGACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

91

Amino Acids

10.71

Weight (kDa)

9.52

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	37 - 90	2.9e-09	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	152
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AlwI	GGATC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	197
BfaI	CTAG	2 cut(s)	69, 258
Bsa29I	ATCGAT	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	187
BseCI	ATCGAT	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	187
BshVI	ATCGAT	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	230
BspDI	ATCGAT	1 cut(s)	229
BspPI	GGATC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	168
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	229
BsuTUI	ATCGAT	1 cut(s)	229
ClaI	ATCGAT	1 cut(s)	229
CviAII	CATG	2 cut(s)	164, 253
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	13
FaeI	CATG	2 cut(s)	167, 256
FaiI	YATR	5 cut(s)	108, 126, 165, 216, 254
FatI	CATG	2 cut(s)	163, 252
FspBI	CTAG	2 cut(s)	69, 258
Hin1II	CATG	2 cut(s)	167, 256
HinfI	GANTC	2 cut(s)	89, 160
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	11, 20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	167, 256
Kzo9I	GATC	1 cut(s)	230
LpnPI	CCDG	1 cut(s)	168
MaeI	CTAG	2 cut(s)	69, 258
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MluCI	AATT	2 cut(s)	40, 53
MnlI	CCTC	2 cut(s)	122, 237
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	2 cut(s)	30, 197
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	1 cut(s)	230
NlaIII	CATG	2 cut(s)	167, 256
NsiI	ATGCAT	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	89, 160
SaqAI	TTAA	2 cut(s)	30, 197
Sau3AI	GATC	1 cut(s)	230
SetI	ASST	2 cut(s)	70, 226
SgeI	CNNG	7 cut(s)	49, 81, 110, 176, 195, 265, 270
Sse9I	AATT	2 cut(s)	40, 53
SspMI	CTAG	2 cut(s)	69, 258
TaqI	TCGA	2 cut(s)	36, 229
TasI	AATT	2 cut(s)	40, 53
TfiI	GAWTC	2 cut(s)	89, 160
Tru1I	TTAA	2 cut(s)	30, 197
Tru9I	TTAA	2 cut(s)	30, 197
TspDTI	ATGAA	1 cut(s)	95
XagI	CCTNNNNNAGG	1 cut(s)	72
XapI	RAATTY	1 cut(s)	40
XspI	CTAG	2 cut(s)	69, 258
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.