Rh5AG534500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000801
Physical Location & Seq
Reverse (-)
91740127 .. 91741479
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG534500.1

Sequence Viewer

Length: 360 bp
ATGATGGCCGCCGTTTCGTTTCGGACTCGTCCACTTCAGCTCGCTCAATTTCACTCAGAAACAAAAACCCCAATCCCAATTCCCCCTAAATTTACCAAACCGCTAAGGTTTTCCGGCGGCCGTCCTAGCATGAGTTCCAGATCCGCGACCAGGGGATCCATATGGGAGCTGGTTGAAATCGGAAGCAAGAGTTCATGGCTGACCTTGATGATTATGGACAGCCACAGATTCAGGGGAGATTTGCTGCAATGGTCATCTGTTGGCTTCTGGGAAATGGGTGCCTTTTTCCTGGAACAGTGTGCTTACACTCCAAGATTACTATGTTGCCTTGTTCCCGGTGATTTTGGGTTCGCAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.39

Weight (kDa)

9.64

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AccII CGCG 1 cut(s) 146
AciI CCGC 4 cut(s) 9, 101, 117, 144
AclWI GGATC 3 cut(s) 135, 150, 163
AcoI YGGCCR 2 cut(s) 6, 118
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 1 cut(s) 176
AjnI CCWGG 2 cut(s) 149, 288
AluBI AGCT 2 cut(s) 40, 169
AluI AGCT 2 cut(s) 40, 169
AlwI GGATC 3 cut(s) 135, 150, 163
AoxI GGCC 2 cut(s) 6, 118
ApeKI GCWGC 2 cut(s) 244, 353
ApoI RAATTY 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 350
BamHI GGATCC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 2 cut(s) 151, 290
BcnI CCSGG 1 cut(s) 336
BfaI CTAG 1 cut(s) 126
BisI GCNGC 4 cut(s) 9, 118, 245, 354
BlsI GCNGC 4 cut(s) 10, 119, 246, 355
Bme1390I CCNGG 3 cut(s) 151, 290, 336
BmiI GGNNCC 2 cut(s) 157, 280
BmrFI CCNGG 3 cut(s) 151, 290, 336
Bpu10I CCTNAGC 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 254
BseBI CCWGG 2 cut(s) 151, 290
BseDI CCNNGG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 69
BseX3I CGGCCG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 146
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 2 cut(s) 8, 120
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 121
BsiSI CCGG 2 cut(s) 114, 336
BslI CCNNNNNNNGG 1 cut(s) 150
BsnI GGCC 2 cut(s) 8, 120
Bsp143I GATC 2 cut(s) 140, 155
BspACI CCGC 4 cut(s) 9, 101, 117, 144
BspANI GGCC 2 cut(s) 8, 120
BspCNI CTCAG 1 cut(s) 68
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 157, 280
BspPI GGATC 3 cut(s) 135, 150, 163
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 2 cut(s) 140, 155
Bst2UI CCWGG 2 cut(s) 151, 290
Bst4CI ACNGT 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 55, 104
BstFNI CGCG 1 cut(s) 146
BstKTI GATC 2 cut(s) 143, 158
BstMBI GATC 2 cut(s) 140, 155
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 2 cut(s) 151, 290
BstSCI CCNGG 3 cut(s) 149, 288, 334
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 2 cut(s) 140, 155
BstYI RGATCY 2 cut(s) 140, 155
BstZI CGGCCG 1 cut(s) 118
BsuRI GGCC 2 cut(s) 8, 120
BtsIMutI CAGTG 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 42
CviAII CATG 2 cut(s) 130, 195
CviJI RGCY 7 cut(s) 8, 40, 120, 169, 199, 222, 264
CviKI_1 RGCY 7 cut(s) 8, 40, 120, 169, 199, 222, 264
DdeI CTNAG 2 cut(s) 55, 104
DpnI GATC 2 cut(s) 142, 157
DpnII GATC 2 cut(s) 140, 155
EaeI YGGCCR 2 cut(s) 6, 118
EagI CGGCCG 1 cut(s) 118
EclXI CGGCCG 1 cut(s) 118
Eco52I CGGCCG 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 149, 288
FaeI CATG 2 cut(s) 133, 198
FaiI YATR 7 cut(s) 131, 161, 163, 196, 215, 322, 358
FatI CATG 2 cut(s) 129, 194
FauNDI CATATG 1 cut(s) 161
Fnu4HI GCNGC 4 cut(s) 9, 118, 245, 354
Fsp4HI GCNGC 4 cut(s) 9, 118, 245, 354
FspBI CTAG 1 cut(s) 126
GluI GCNGC 4 cut(s) 9, 118, 245, 354
HaeIII GGCC 2 cut(s) 8, 120
HapII CCGG 2 cut(s) 114, 336
Hin1II CATG 2 cut(s) 133, 198
HinfI GANTC 2 cut(s) 25, 228
HpaII CCGG 2 cut(s) 114, 336
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 3 cut(s) 24, 58, 182
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 55, 104
Hsp92II CATG 2 cut(s) 133, 198
Kzo9I GATC 2 cut(s) 140, 155
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 1 cut(s) 231
MaeI CTAG 1 cut(s) 126
MalI GATC 2 cut(s) 142, 157
MboI GATC 2 cut(s) 140, 155
MflI RGATCY 2 cut(s) 140, 155
MluCI AATT 3 cut(s) 47, 78, 89
MlyI GAGTC 1 cut(s) 19
MspI CCGG 2 cut(s) 114, 336
MspR9I CCNGG 3 cut(s) 151, 290, 336
MvaI CCWGG 2 cut(s) 151, 290
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 126
NciI CCSGG 1 cut(s) 336
NdeI CATATG 1 cut(s) 161
NdeII GATC 2 cut(s) 140, 155
NlaIII CATG 2 cut(s) 133, 198
NlaIV GGNNCC 2 cut(s) 157, 280
PfeI GAWTC 1 cut(s) 228
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 4 cut(s) 10, 119, 246, 355
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp6I CCWGG 2 cut(s) 149, 288
PspGI CCWGG 2 cut(s) 149, 288
PspN4I GGNNCC 2 cut(s) 157, 280
PsuI RGATCY 2 cut(s) 140, 155
SatI GCNGC 4 cut(s) 9, 118, 245, 354
Sau3AI GATC 2 cut(s) 140, 155
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 3 cut(s) 151, 290, 336
SetI ASST 4 cut(s) 42, 110, 171, 206
Sse9I AATT 3 cut(s) 47, 78, 89
SsiI CCGC 4 cut(s) 9, 101, 117, 144
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 149, 288, 334
TaaI ACNGT 1 cut(s) 297
TasI AATT 3 cut(s) 47, 78, 89
TauI GCSGC 2 cut(s) 11, 120
TfiI GAWTC 1 cut(s) 228
TscAI CASTG 1 cut(s) 302
TseI GCWGC 2 cut(s) 244, 353
TspDTI ATGAA 1 cut(s) 183
TspRI CASTG 1 cut(s) 302
XapI RAATTY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.