Rh1BG117800

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
20107428 .. 20114138
6711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG117800.1

Sequence Viewer

Length: 561 bp
ATGGCACGACTCCATTTCCAGAGCTTCAATTCTTGTAATTTTGATTGGAATAGTGCTCAGTTTCATGTCTTGGTCAATGGGTTTGTGGTTCTGAAAGTCAGTAACTTTGGATTTGAGGGTGTATTAGGTCCAATGGTTAGGGAGTACTTGATTTGGGTCAGTACTGAAAAGCTTGTAATTCGATTTGTTCTTGATAAAAATTCAAGCTTTGCGTTTGTGAATGCGATTGAGGTTATTCCACAAGCAATATGCACTAGATATGGACTTGCTGTGGGTTCCAACCAATATGTTATCACTTGGATACATTTTGGAGAGAACAGCATGCAGAAATGTGAAATTATGCTCAATGATTTGATTGGTTCTAAGAGGACCAACACCAATATTAAAGCAACCATAGCTCAGCCATCTCGTACAGTCTCCACTAAAGTACAGAAAAACAGGGACTCCCTCACTCACTCTCTCACTACCTTAAAGTCTTTTTCTCTCACACTGGTGCAATTTCCAACTCAACGCTTTGACTCCCACCGCTTGCTTCTCAGGGAGAAGTCAAGTTTGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

186

Amino Acids

21.13

Weight (kDa)

9.71

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 526
AcsI RAATTY 1 cut(s) 199
AfaI GTAC 4 cut(s) 146, 163, 412, 429
AgsI TTSAA 2 cut(s) 28, 204
AjuI GAANNNNNNNTTGG 1 cut(s) 536
AleI CACNNNNGTG 1 cut(s) 491
AluBI AGCT 4 cut(s) 24, 172, 207, 398
AluI AGCT 4 cut(s) 24, 172, 207, 398
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 421
ApoI RAATTY 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 128, 369
AvaII GGWCC 2 cut(s) 128, 369
Bbv12I GWGCWC 1 cut(s) 58
BccI CCATC 1 cut(s) 412
BciVI GTATCC 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 1 cut(s) 255
BfuI GTATCC 1 cut(s) 294
BlpI GCTNAGC 1 cut(s) 399
BmcAI AGTACT 2 cut(s) 146, 163
Bme18I GGWCC 2 cut(s) 128, 369
BmgT120I GGNCC 2 cut(s) 128, 369
BmiI GGNNCC 1 cut(s) 277
Bpu1102I GCTNAGC 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bse1I ACTGG 1 cut(s) 495
BseMII CTCAG 3 cut(s) 71, 413, 550
BseNI ACTGG 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 58
BslFI GGGAC 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 421
BsmFI GGGAC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 58
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 1 cut(s) 526
BspCNI CTCAG 3 cut(s) 70, 412, 549
BspLI GGNNCC 1 cut(s) 277
BsrI ACTGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 415
BstC8I GCNNGC 2 cut(s) 323, 530
BstDEI CTNAG 4 cut(s) 57, 363, 399, 536
BstMAI GTCTC 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 325
BsuI GTATCC 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 488
Cac8I GCNNGC 2 cut(s) 323, 530
Cfr13I GGNCC 2 cut(s) 128, 369
Csp6I GTAC 4 cut(s) 145, 162, 411, 428
CviAII CATG 2 cut(s) 65, 322
CviJI RGCY 5 cut(s) 24, 172, 207, 398, 403
CviKI_1 RGCY 5 cut(s) 24, 172, 207, 398, 403
CviQI GTAC 4 cut(s) 145, 162, 411, 428
DdeI CTNAG 4 cut(s) 57, 363, 399, 536
Eco47I GGWCC 2 cut(s) 128, 369
FaeI CATG 2 cut(s) 68, 325
FaiI YATR 7 cut(s) 66, 250, 261, 288, 323, 341, 395
FaqI GGGAC 1 cut(s) 455
FatI CATG 2 cut(s) 64, 321
FspBI CTAG 1 cut(s) 255
Hin1II CATG 2 cut(s) 68, 325
HindIII AAGCTT 2 cut(s) 170, 205
HinfI GANTC 3 cut(s) 9, 443, 518
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 19, 191
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 252, 325, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 4 cut(s) 57, 363, 399, 536
Hsp92II CATG 2 cut(s) 68, 325
LpnPI CCDG 4 cut(s) 32, 424, 476, 523
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 6 cut(s) 28, 37, 177, 199, 336, 497
MlyI GAGTC 3 cut(s) 3, 437, 512
MmeI TCCRAC 2 cut(s) 303, 527
MnlI CCTC 4 cut(s) 109, 223, 360, 458
MseI TTAA 2 cut(s) 384, 470
MslI CAYNNNNRTG 1 cut(s) 491
Mva1269I GAATGC 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 395
NlaIII CATG 2 cut(s) 68, 325
NlaIV GGNNCC 1 cut(s) 277
NspI RCATGY 1 cut(s) 325
OliI CACNNNNGTG 1 cut(s) 491
PaeI GCATGC 1 cut(s) 325
PctI GAATGC 1 cut(s) 226
PleI GAGTC 3 cut(s) 3, 437, 512
PpsI GAGTC 3 cut(s) 3, 437, 512
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 2 cut(s) 128, 369
RsaI GTAC 4 cut(s) 146, 163, 412, 429
RsaNI GTAC 4 cut(s) 145, 162, 411, 428
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 2 cut(s) 384, 470
Sau96I GGNCC 2 cut(s) 128, 369
ScaI AGTACT 2 cut(s) 146, 163
SchI GAGTC 3 cut(s) 3, 437, 512
SduI GDGCHC 1 cut(s) 58
SetI ASST 7 cut(s) 26, 130, 174, 209, 234, 400, 470
SinI GGWCC 2 cut(s) 128, 369
SmiMI CAYNNNNRTG 1 cut(s) 491
SphI GCATGC 1 cut(s) 325
Sse9I AATT 6 cut(s) 28, 37, 177, 199, 336, 497
SsiI CCGC 1 cut(s) 526
SspI AATATT 1 cut(s) 382
SspMI CTAG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 181
TasI AATT 6 cut(s) 28, 37, 177, 199, 336, 497
TatI WGTACW 3 cut(s) 144, 161, 427
Tru1I TTAA 2 cut(s) 384, 470
Tru9I TTAA 2 cut(s) 384, 470
TscAI CASTG 1 cut(s) 495
TspDTI ATGAA 1 cut(s) 53
TspRI CASTG 1 cut(s) 495
VpaK11BI GGWCC 2 cut(s) 128, 369
XapI RAATTY 1 cut(s) 199
XceI RCATGY 1 cut(s) 325
XspI CTAG 1 cut(s) 255
ZrmI AGTACT 2 cut(s) 146, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.