Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

5764158 .. 5770510

Gene Structure 6353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006274

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2748 bp

ATGGGTATAGACGTCGGGTTCTGGATTGGTGAGGCGAAGCACAGACCTTGGTGTGGGTTTGTAAAAGAGACCGGAGTTGCTTTGGTGGCATCGAGTTTGACGAGGAGGAGATCGGTTGCAGTTTCGGGACTAGAGGAGGAGCGAGGTCGGAGCTTTCCTACTAAAGATCGGCGTTGGGATCGGCACGAAAACTCCATCCACGAAATTGTCGAAAGCTACTCCGCCGTCTGCGCCGCCACCGAAACCCTCCTCAACGGCGCCGGAGACCTCTCGGTGGGCCCGCAACTCGTCTCCCACGTCCACCGCCTCTGCAGCCACGGCCTCGAGTCTCTCGTCCGCGACCACTTCCTCGGCGCGCTCGAGAGAACCTTCGAGAAAAACGGCGCCTCCAAATTCTGGCGGCATTTCGAGGCACACGACGACGTTTCGATCGGAGAGCAAGTGTTCTACAACGCCTTGGAGGAAATCTCACTGGAAAAGCAGTACCAGGAGAAGTGCTTGCTGATGCTGGTTCATGCTTTACAGACTTATGGAGGAAGAAGAAGCCGTGATTCCGATGACGTCAGCCCGGAGCTCTTTGCTAAGTATCAATTATCAGTGTCCTCGGTTCTTATGGCCACTCTTCCTCGGAAATTTCCAGAGATACTCAACTGGTATTTTAAGGGAAGGTTGGAGGAACTGAGTACTATAATGGCCGGAGACGAGCCTCGTGGCGATGAGGATGAAGATGACAGGGATGATATGGAGTTGGATGAGAAATGCAGAGTGTCATACAGGAGTGGACAAATGGAGATTGATGAATGTTATCCCCAAGGGAGGTTCTTTGATAATAATAAATTGGTCAACAACATAGGGCGGGTTGTACATGATTTGAGGAGTCTTGGATTTACATCTATGACTGAAGATGCATATGCATCTGCTATCTTTTTATTTCTTAAGGACAAAGTTCATGACCTTGCTGGTGATGATTATCGGATTTCTGTTTTGGAGTCTATTAAGAGGTGGATACAGGCTGTGCCTCTTCAGTTCTTGCATGCTTTACTTGCTTATCTTGGTGATTCTGTTAGTTATGAAAGTGCATCATCCGGTCTCAAGTCACCTTTGGCTAAATGCCCTGCTTCATTCTATCCTGGAATCGATACTCCATCTGAAGGTCTTGTAAGATGGCAGTTGCGACTAGAGTATTTTGCTTATGAAACATTGCAAGATTTGAGAATAGCAAAATTATTTGAGATTATTGTGGATTATCCTGACAGCTCTCCTGCGATTGAAGATTTGAAACAGTGTCTTGAATACACTGGACAACATTCTAAGCTTGTGGAGTCATTTATTTCAGCACTACAGTACCGGTTGCTCACTGCAGGTGCCTCAACAAATGACATTTTGCATCAATATGTTTCAACGATTAAGGCACTCCGGACAATAGATCCAGCAGGTGTTTTCCTTGAAGCAGTCGGTGAGCCAATAAGGGACTATTTAAGGGGAAGGAAAGACACCATCAAGTGCATTGTGACCATGCTTACCGATGGGACTGGTGCAAATTCTAATGTCTCCGGAAACACTGGCGATAGCCTTCTTGAAGAACTAAATAGAGATGAAGAAAGCCAAGAGAACATTGCTCCTGAGGATGACTTTCATACTGATGATAAGCAAGCTTGGATAAATGCTTCACGCTGGGAGCCTGACCCTGTAGAAGCTGACCCCTTGAAAGGTAGCAGGAACCGAAGGAAGGTTGACATACTTGGAATGATTGTTGGCATAATTGGTTCACAAGACCAACTTGTTAATGAATACCGTGTTATGCTGGCCGAAAAGCTTCTCAACAAATCTGATTATGACATTGATTCAGAGATACGTACTCTTGAACTCCTCAAGATACATTTTGGAGAGAACAGCATGCAGAAATGTGAAATTATGCTCAATGATCTGATTGGTTCTAAGAGGACCAACACTAATATTAAAGCAACCATAGCTCAGCCATCTCATACAGGCGGTGAGCTGGGGGATAACAGGGTATCCATGGATATTCTTGACGCTACAATTATCTCTTCAAATTTTTGGCCTCCAATCCAGGAGGAGTCCCTAAATGTACCTGGGCCTGTTGACCAACTACTCTCTGATTATGCAAAGAGATTTAATGAAATCAAGACCCCTCGTAAGCTATTGTGGAAGAAGAATCTTGGTACTGTCAAGTTGGAATTGCAATTTGAAGATAGAGAAATGCAGTTCATGGTTGCTCCTCTTCATGCAGCAATCATAATGCAATTTCAAGATCAGAAAAGCTGGACCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATATACTTAATCGGAGGATCAATTTTTGGATAAGCAAGGGAATTCTTGCAGAATCACTTGGGGAAGACACTGATGACCATGTGTTTACACTAATGGAAGGGGTGATTGACACTGTCAAAAACACCGCTAATGATGGGAACTGCGAGGATCTTATAGTTGGTGATGAGGAAGGAGAGAGCTCTGTAGCCTCTGTAGAGGATCAACTGCGCAAGGAAATGACTGTGTATGAGAAATTTATTTTGGGGATGCTCACAAACTTTGGAAGCATGGCTTTGGATCGTATTCATAATACTCTCAAGATGTTCTGCATAGCTGATCCTACTTATGACAAAACCCTCCAACAGCTGCAAAGCTTCTTATCAGGCCTAGTTTCTGAAGAGAAATTAGAACTAAGAGATGGCATGTACTTTTTGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

916

Amino Acids

103.36

Weight (kDa)

4.94

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_ANAPC2	PF25773	388 - 496	1e-41	ANAPC2-like, TPR repeats
Cullin_AB	PF26557	681 - 794	1e-14	Cullin alpha+beta domain
ANAPC2	PF08672	854 - 911	2.1e-23	Anaphase promoting complex (APC) subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1352, 1424
AatII	GACGTC	2 cut(s)	15, 564
Acc16I	TGCGCA	1 cut(s)	2534
Acc36I	ACCTGC	2 cut(s)	1352, 1424
AccB1I	GGYRCC	3 cut(s)	257, 383, 1364
AccB7I	CCANNNNNTGG	1 cut(s)	396
AccII	CGCG	2 cut(s)	339, 356
AccIII	TCCGGA	2 cut(s)	1416, 1553
AciI	CCGC	9 cut(s)	222, 234, 281, 304, 337, 400, 856, 1992, 2451
AclWI	GGATC	7 cut(s)	186, 1421, 2351, 2481, 2532, 2610, 2636
AcoI	YGGCCR	3 cut(s)	615, 693, 1806
AcsI	RAATTY	6 cut(s)	392, 632, 1540, 2053, 2367, 2558
AcuI	CTGAAG	4 cut(s)	921, 1007, 1170, 2721
AcyI	GRCGYC	4 cut(s)	12, 258, 384, 561
AfaI	GTAC	8 cut(s)	485, 685, 864, 1346, 1858, 2091, 2185, 2732
AfiI	CCNNNNNNNGG	7 cut(s)	53, 274, 396, 816, 1151, 1709, 1729
AflII	CTTAAG	1 cut(s)	935
AgeI	ACCGGT	1 cut(s)	1347
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	4 cut(s)	486, 1129, 2070, 2092
AjuI	GAANNNNNNNTTGG	2 cut(s)	2549, 2581
Alw21I	GWGCWC	2 cut(s)	576, 2507
Alw26I	GTCTC	7 cut(s)	62, 258, 295, 333, 693, 1094, 1555
AlwI	GGATC	7 cut(s)	186, 1421, 2351, 2481, 2532, 2610, 2636
Ama87I	CYCGRG	2 cut(s)	323, 359
Aor13HI	TCCGGA	2 cut(s)	1416, 1553
AoxI	GGCC	8 cut(s)	277, 319, 615, 693, 1806, 2060, 2096, 2689
ApaI	GGGCCC	1 cut(s)	281
ApeKI	GCWGC	5 cut(s)	312, 2249, 2303, 2306, 2671
ApoI	RAATTY	6 cut(s)	392, 632, 1540, 2053, 2367, 2558
AsiGI	ACCGGT	1 cut(s)	1347
Asp700I	GAANNNNTTC	1 cut(s)	1815
AspLEI	GCGC	6 cut(s)	233, 260, 356, 358, 386, 2535
AspS9I	GGNCC	5 cut(s)	277, 278, 1944, 2096, 2286
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	8 cut(s)	41, 974, 1067, 1089, 1469, 2006, 2440, 2498
AvaI	CYCGRG	2 cut(s)	323, 359
AvaII	GGWCC	2 cut(s)	1944, 2286
AxyI	CCTNAGG	1 cut(s)	1623
BaeGI	GKGCMC	1 cut(s)	281
BaeI	ACNNNNGTAYC	2 cut(s)	1328, 1361
BalI	TGGCCA	1 cut(s)	617
BanI	GGYRCC	3 cut(s)	257, 383, 1364
BanII	GRGCYC	3 cut(s)	281, 576, 2507
BauI	CACGAG	1 cut(s)	708
BbsI	GAAGAC	1 cut(s)	2397
Bbv12I	GWGCWC	2 cut(s)	576, 2507
BbvI	GCAGC	5 cut(s)	324, 2261, 2293, 2315, 2658
BccI	CCATC	8 cut(s)	203, 1153, 1158, 1505, 1520, 1987, 2453, 2717
BceAI	ACGGC	5 cut(s)	209, 271, 334, 397, 531
BciT130I	CCWGG	4 cut(s)	488, 1131, 2072, 2094
BciVI	GTATCC	2 cut(s)	999, 2026
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	7 cut(s)	62, 258, 295, 333, 693, 1094, 1555
BfaI	CTAG	3 cut(s)	131, 1178, 2693
BfmI	CTRYAG	7 cut(s)	310, 1340, 1359, 1689, 2307, 2508, 2517
BfoI	RGCGCY	2 cut(s)	261, 387
BfrI	CTTAAG	1 cut(s)	935
BfuAI	ACCTGC	2 cut(s)	1352, 1424
BfuI	GTATCC	2 cut(s)	999, 2026
BglII	AGATCT	1 cut(s)	2296
BisI	GCNGC	7 cut(s)	234, 313, 401, 2250, 2304, 2307, 2672
BlpI	GCTNAGC	1 cut(s)	1974
BlsI	GCNGC	7 cut(s)	235, 314, 402, 2251, 2305, 2308, 2673
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	5 cut(s)	488, 569, 1131, 2072, 2094
Bme18I	GGWCC	2 cut(s)	1944, 2286
BmeT110I	CYCGRG	2 cut(s)	323, 359
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	5 cut(s)	277, 278, 1944, 2096, 2286
BmiI	GGNNCC	7 cut(s)	259, 279, 385, 1366, 1680, 1721, 2319
BmrFI	CCNGG	5 cut(s)	488, 569, 1131, 2072, 2094
BmsI	GCATC	7 cut(s)	98, 495, 895, 923, 1088, 1396, 2562
BpiI	GAAGAC	1 cut(s)	2397
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
Bpu1102I	GCTNAGC	1 cut(s)	1974
BpuEI	CTTGAG	3 cut(s)	1076, 1856, 2606
BpuMI	CCSGG	1 cut(s)	569
Bsa29I	ATCGAT	1 cut(s)	1137
BsaAI	YACGTR	1 cut(s)	1856
BsaBI	GATNNNNATC	2 cut(s)	889, 969
BsaHI	GRCGYC	4 cut(s)	12, 258, 384, 561
BsaI	GGTCTC	3 cut(s)	62, 258, 1094
BsaJI	CCNNGG	9 cut(s)	47, 316, 349, 456, 603, 626, 811, 2019, 2093
BsaWI	WCCGGW	5 cut(s)	71, 1085, 1347, 1416, 1553
BsaXI	ACNNNNNCTCC	6 cut(s)	176, 206, 371, 401, 426, 456
Bsc4I	CCNNNNNNNGG	7 cut(s)	53, 274, 396, 816, 1151, 1709, 1729
Bse118I	RCCGGY	1 cut(s)	1347
Bse1I	ACTGG	5 cut(s)	477, 656, 1303, 1537, 1567
Bse21I	CCTNAGG	1 cut(s)	1623
Bse3DI	GCAATG	2 cut(s)	1199, 1614
Bse8I	GATNNNNATC	2 cut(s)	889, 969
BseAI	TCCGGA	2 cut(s)	1416, 1553
BseBI	CCWGG	4 cut(s)	488, 1131, 2072, 2094
BseCI	ATCGAT	1 cut(s)	1137
BseDI	CCNNGG	9 cut(s)	47, 316, 349, 456, 603, 626, 811, 2019, 2093
BseGI	GGATG	7 cut(s)	195, 727, 742, 757, 1082, 1633, 2577
BseJI	GATNNNNATC	2 cut(s)	889, 969
BseLI	CCNNNNNNNGG	7 cut(s)	53, 274, 396, 816, 1151, 1709, 1729
BseMI	GCAATG	2 cut(s)	1199, 1614
BseMII	CTCAG	3 cut(s)	671, 1614, 1988
BseNI	ACTGG	5 cut(s)	477, 656, 1303, 1537, 1567
BsePI	GCGCGC	1 cut(s)	354
BseRI	GAGGAG	9 cut(s)	118, 121, 149, 152, 239, 889, 1859, 2090, 2229
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	5 cut(s)	324, 2261, 2293, 2315, 2658
BseYI	CCCAGC	2 cut(s)	1674, 1999
Bsh1236I	CGCG	2 cut(s)	339, 356
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	8 cut(s)	279, 321, 617, 695, 1808, 2062, 2098, 2691
BshNI	GGYRCC	3 cut(s)	257, 383, 1364
BshTI	ACCGGT	1 cut(s)	1347
BshVI	ATCGAT	1 cut(s)	1137
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	2 cut(s)	576, 2507
BsiHKCI	CYCGRG	2 cut(s)	323, 359
BsiSI	CCGG	8 cut(s)	72, 261, 569, 696, 1086, 1348, 1417, 1554
BslFI	GGGAC	4 cut(s)	141, 1484, 1543, 2065
BslI	CCNNNNNNNGG	7 cut(s)	53, 274, 396, 816, 1151, 1709, 1729
BsmAI	GTCTC	7 cut(s)	62, 258, 295, 333, 693, 1094, 1555
BsmBI	CGTCTC	2 cut(s)	295, 693
BsmFI	GGGAC	4 cut(s)	141, 1484, 1543, 2065
BsnI	GGCC	8 cut(s)	279, 321, 617, 695, 1808, 2062, 2098, 2691
Bso31I	GGTCTC	3 cut(s)	62, 258, 1094
BsoBI	CYCGRG	2 cut(s)	323, 359
Bsp120I	GGGCCC	1 cut(s)	277
Bsp1286I	GDGCHC	3 cut(s)	281, 576, 2507
Bsp13I	TCCGGA	2 cut(s)	1416, 1553
Bsp1407I	TGTACA	1 cut(s)	862
Bsp1720I	GCTNAGC	1 cut(s)	1974
Bsp19I	CCATGG	1 cut(s)	2019
BspACI	CCGC	9 cut(s)	222, 234, 281, 304, 337, 400, 856, 1992, 2451
BspANI	GGCC	8 cut(s)	279, 321, 617, 695, 1808, 2062, 2098, 2691
BspCNI	CTCAG	3 cut(s)	672, 1615, 1987
BspDI	ATCGAT	1 cut(s)	1137
BspEI	TCCGGA	2 cut(s)	1416, 1553
BspFNI	CGCG	2 cut(s)	339, 356
BspHI	TCATGA	1 cut(s)	949
BspLI	GGNNCC	7 cut(s)	259, 279, 385, 1366, 1680, 1721, 2319
BspMAI	CTGCAG	3 cut(s)	314, 1363, 2311
BspMI	ACCTGC	2 cut(s)	1352, 1424
BspPI	GGATC	7 cut(s)	186, 1421, 2351, 2481, 2532, 2610, 2636
BspT107I	GGYRCC	3 cut(s)	257, 383, 1364
BspTI	CTTAAG	1 cut(s)	935
BspTNI	GGTCTC	3 cut(s)	62, 258, 1094
BsrDI	GCAATG	2 cut(s)	1199, 1614
BsrFI	RCCGGY	1 cut(s)	1347
BsrGI	TGTACA	1 cut(s)	862
BsrI	ACTGG	5 cut(s)	477, 656, 1303, 1537, 1567
BssAI	RCCGGY	1 cut(s)	1347
BssECI	CCNNGG	9 cut(s)	47, 316, 349, 456, 603, 626, 811, 2019, 2093
BssHII	GCGCGC	1 cut(s)	354
BssNI	GRCGYC	4 cut(s)	12, 258, 384, 561
BssSI	CACGAG	1 cut(s)	708
BssT1I	CCWWGG	4 cut(s)	47, 456, 811, 2019
Bst2BI	CACGAG	1 cut(s)	708
Bst2UI	CCWGG	4 cut(s)	488, 1131, 2072, 2094
Bst4CI	ACNGT	6 cut(s)	1284, 1344, 1796, 2188, 2440, 2548
Bst6I	CTCTTC	5 cut(s)	627, 1026, 2053, 2247, 2697
BstACI	GRCGYC	4 cut(s)	12, 258, 384, 561
BstAFI	CTTAAG	1 cut(s)	935
BstAUI	TGTACA	1 cut(s)	862
BstBAI	YACGTR	1 cut(s)	1856
BstC8I	GCNNGC	7 cut(s)	281, 356, 500, 1035, 1653, 1806, 1898
BstDEI	CTNAG	7 cut(s)	582, 680, 1311, 1623, 1938, 1974, 2717
BstDSI	CCRYGG	2 cut(s)	316, 2019
BstF5I	GGATG	7 cut(s)	195, 727, 742, 757, 1082, 1633, 2577
BstFNI	CGCG	2 cut(s)	339, 356
BstH2I	RGCGCY	2 cut(s)	261, 387
BstHHI	GCGC	6 cut(s)	233, 260, 356, 358, 386, 2535
BstMAI	GTCTC	7 cut(s)	62, 258, 295, 333, 693, 1094, 1555
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 230, 312, 318, 1043, 1970
BstNI	CCWGG	4 cut(s)	488, 1131, 2072, 2094
BstNSI	RCATGY	3 cut(s)	1037, 1900, 2731
BstSCI	CCNGG	5 cut(s)	486, 567, 1129, 2070, 2092
BstSFI	CTRYAG	7 cut(s)	310, 1340, 1359, 1689, 2307, 2508, 2517
BstSLI	GKGCMC	1 cut(s)	281
BstSNI	TACGTA	1 cut(s)	1856
BstUI	CGCG	2 cut(s)	339, 356
BstV1I	GCAGC	5 cut(s)	324, 2261, 2293, 2315, 2658
BstV2I	GAAGAC	1 cut(s)	2397
BstX2I	RGATCY	3 cut(s)	1426, 2296, 2473
BstYI	RGATCY	3 cut(s)	1426, 2296, 2473
Bsu15I	ATCGAT	1 cut(s)	1137
Bsu36I	CCTNAGG	1 cut(s)	1623
BsuI	GTATCC	2 cut(s)	999, 2026
BsuRI	GGCC	8 cut(s)	279, 321, 617, 695, 1808, 2062, 2098, 2691
BsuTUI	ATCGAT	1 cut(s)	1137
BtgI	CCRYGG	2 cut(s)	316, 2019
BtgZI	GCGATG	1 cut(s)	729
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	7 cut(s)	195, 727, 742, 757, 1082, 1633, 2577
BtsI	GCAGTG	1 cut(s)	1356
BtsIMutI	CAGTG	8 cut(s)	470, 603, 1289, 1296, 1356, 1560, 2394, 2436
BveI	ACCTGC	2 cut(s)	1352, 1424
Cac8I	GCNNGC	7 cut(s)	281, 356, 500, 1035, 1653, 1806, 1898
CciI	TCATGA	1 cut(s)	949
CfoI	GCGC	6 cut(s)	233, 260, 356, 358, 386, 2535
Cfr10I	RCCGGY	1 cut(s)	1347
Cfr13I	GGNCC	5 cut(s)	277, 278, 1944, 2096, 2286
ClaI	ATCGAT	1 cut(s)	1137
CseI	GACGC	1 cut(s)	2042
Csp6I	GTAC	8 cut(s)	484, 684, 863, 1345, 1857, 2090, 2184, 2731
CspAI	ACCGGT	1 cut(s)	1347
CviQI	GTAC	8 cut(s)	484, 684, 863, 1345, 1857, 2090, 2184, 2731
DdeI	CTNAG	7 cut(s)	582, 680, 1311, 1623, 1938, 1974, 2717
DinI	GGCGCC	2 cut(s)	259, 385
EaeI	YGGCCR	3 cut(s)	615, 693, 1806
Eam1104I	CTCTTC	5 cut(s)	627, 1026, 2053, 2247, 2697
EarI	CTCTTC	5 cut(s)	627, 1026, 2053, 2247, 2697
EciI	GGCGGA	1 cut(s)	211
Ecl136II	GAGCTC	2 cut(s)	574, 2505
Eco105I	TACGTA	1 cut(s)	1856
Eco130I	CCWWGG	4 cut(s)	47, 456, 811, 2019
Eco147I	AGGCCT	1 cut(s)	2691
Eco24I	GRGCYC	3 cut(s)	281, 576, 2507
Eco31I	GGTCTC	3 cut(s)	62, 258, 1094
Eco47I	GGWCC	2 cut(s)	1944, 2286
Eco53kI	GAGCTC	2 cut(s)	574, 2505
Eco57I	CTGAAG	4 cut(s)	921, 1007, 1170, 2721
Eco81I	CCTNAGG	1 cut(s)	1623
Eco88I	CYCGRG	2 cut(s)	323, 359
EcoICRI	GAGCTC	2 cut(s)	574, 2505
EcoRI	GAATTC	1 cut(s)	2367
EcoRII	CCWGG	4 cut(s)	486, 1129, 2070, 2092
EcoT14I	CCWWGG	4 cut(s)	47, 456, 811, 2019
EcoT22I	ATGCAT	2 cut(s)	910, 916
EcoT38I	GRGCYC	3 cut(s)	281, 576, 2507
EgeI	GGCGCC	2 cut(s)	259, 385
EheI	GGCGCC	2 cut(s)	259, 385
ErhI	CCWWGG	4 cut(s)	47, 456, 811, 2019
Esp3I	CGTCTC	2 cut(s)	295, 693
FalI	AAGNNNNNCTT	4 cut(s)	1764, 1796, 2581, 2613
FaqI	GGGAC	4 cut(s)	141, 1484, 1543, 2065
FauI	CCCGC	2 cut(s)	288, 849
FauNDI	CATATG	1 cut(s)	910
Fnu4HI	GCNGC	7 cut(s)	234, 313, 401, 2250, 2304, 2307, 2672
FokI	GGATG	7 cut(s)	182, 734, 749, 764, 1069, 1640, 2584
FriOI	GRGCYC	3 cut(s)	281, 576, 2507
Fsp4HI	GCNGC	7 cut(s)	234, 313, 401, 2250, 2304, 2307, 2672
FspBI	CTAG	3 cut(s)	131, 1178, 2693
FspI	TGCGCA	1 cut(s)	2534
GlaI	GCGC	6 cut(s)	232, 259, 355, 357, 385, 2534
GluI	GCNGC	7 cut(s)	234, 313, 401, 2250, 2304, 2307, 2672
GsaI	CCCAGC	2 cut(s)	1678, 2003
HaeII	RGCGCY	2 cut(s)	261, 387
HaeIII	GGCC	8 cut(s)	279, 321, 617, 695, 1808, 2062, 2098, 2691
HapII	CCGG	8 cut(s)	72, 261, 569, 696, 1086, 1348, 1417, 1554
HgaI	GACGC	1 cut(s)	2042
HhaI	GCGC	6 cut(s)	233, 260, 356, 358, 386, 2535
Hin1I	GRCGYC	4 cut(s)	12, 258, 384, 561
Hin6I	GCGC	6 cut(s)	231, 258, 354, 356, 384, 2533
HinP1I	GCGC	6 cut(s)	231, 258, 354, 356, 384, 2533
HincII	GTYRAC	3 cut(s)	844, 1735, 2104
HindII	GTYRAC	3 cut(s)	844, 1735, 2104
HindIII	AAGCTT	4 cut(s)	1313, 1653, 1814, 2677
HpaII	CCGG	8 cut(s)	72, 261, 569, 696, 1086, 1348, 1417, 1554
HphI	GGTGA	8 cut(s)	41, 974, 1067, 1089, 1469, 2006, 2440, 2498
Hpy166II	GTNNAC	7 cut(s)	301, 782, 844, 1735, 1769, 2104, 2412
Hpy8I	GTNNAC	7 cut(s)	301, 782, 844, 1735, 1769, 2104, 2412
Hpy99I	CGWCG	3 cut(s)	17, 422, 425
HpyAV	CCTTC	9 cut(s)	379, 660, 1145, 1479, 1583, 1719, 1723, 2417, 2489
HpyCH4III	ACNGT	6 cut(s)	1284, 1344, 1796, 2188, 2440, 2548
HpyCH4IV	ACGT	5 cut(s)	12, 297, 423, 561, 1855
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 230, 312, 318, 1043, 1970
HpyF3I	CTNAG	7 cut(s)	582, 680, 1311, 1623, 1938, 1974, 2717
HpySE526I	ACGT	5 cut(s)	12, 297, 423, 561, 1855
Hsp92I	GRCGYC	4 cut(s)	12, 258, 384, 561
HspAI	GCGC	6 cut(s)	231, 258, 354, 356, 384, 2533
KasI	GGCGCC	2 cut(s)	257, 383
Kpn2I	TCCGGA	2 cut(s)	1416, 1553
LmnI	GCTCC	6 cut(s)	139, 150, 571, 1624, 1678, 2242
Lsp1109I	GCAGC	5 cut(s)	324, 2261, 2293, 2315, 2658
LweI	GCATC	7 cut(s)	98, 495, 895, 923, 1088, 1396, 2562
MaeI	CTAG	3 cut(s)	131, 1178, 2693
MaeII	ACGT	5 cut(s)	12, 297, 423, 561, 1855
MaeIII	GTNAC	2 cut(s)	1095, 1510
MflI	RGATCY	3 cut(s)	1426, 2296, 2473
MhlI	GDGCHC	3 cut(s)	281, 576, 2507
MlsI	TGGCCA	1 cut(s)	617
MluNI	TGGCCA	1 cut(s)	617
Mly113I	GGCGCC	2 cut(s)	258, 384
MlyI	GAGTC	5 cut(s)	335, 886, 998, 1331, 2087
MmeI	TCCRAC	5 cut(s)	128, 651, 729, 2175, 2689
Mox20I	TGGCCA	1 cut(s)	617
Mph1103I	ATGCAT	2 cut(s)	910, 916
MroI	TCCGGA	2 cut(s)	1416, 1553
MroXI	GAANNNNTTC	1 cut(s)	1815
MscI	TGGCCA	1 cut(s)	617
MseI	TTAA	9 cut(s)	660, 936, 996, 1407, 1478, 1785, 1959, 2136, 2334
MslI	CAYNNNNRTG	2 cut(s)	1392, 1641
Msp20I	TGGCCA	1 cut(s)	617
MspA1I	CMGCKG	2 cut(s)	2306, 2671
MspCI	CTTAAG	1 cut(s)	935
MspI	CCGG	8 cut(s)	72, 261, 569, 696, 1086, 1348, 1417, 1554
MspR9I	CCNGG	5 cut(s)	488, 569, 1131, 2072, 2094
MvaI	CCWGG	4 cut(s)	488, 1131, 2072, 2094
MvnI	CGCG	2 cut(s)	339, 356
MwoI	GCNNNNNNNGC	6 cut(s)	86, 230, 312, 318, 1043, 1970
NarI	GGCGCC	2 cut(s)	258, 384
NciI	CCSGG	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	2019
NdeI	CATATG	1 cut(s)	910
NlaIV	GGNNCC	7 cut(s)	259, 279, 385, 1366, 1680, 1721, 2319
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	1095, 1510
NsbI	TGCGCA	1 cut(s)	2534
NsiI	ATGCAT	2 cut(s)	910, 916
NspI	RCATGY	3 cut(s)	1037, 1900, 2731
PaeI	GCATGC	2 cut(s)	1037, 1900
PaeR7I	CTCGAG	2 cut(s)	323, 359
PagI	TCATGA	1 cut(s)	949
PaqCI	CACCTGC	2 cut(s)	1352, 1424
PauI	GCGCGC	1 cut(s)	354
PceI	AGGCCT	1 cut(s)	2691
PcsI	WCGNNNNNNNCGW	6 cut(s)	98, 207, 294, 330, 357, 414
PdmI	GAANNNNTTC	1 cut(s)	1815
PfeI	GAWTC	6 cut(s)	551, 1058, 1134, 1844, 2176, 2378
PflFI	GACNNNGTC	1 cut(s)	2438
PflMI	CCANNNNNTGG	1 cut(s)	396
PfoI	TCCNGGA	2 cut(s)	1129, 2070
PinAI	ACCGGT	1 cut(s)	1347
PkrI	GCNGC	7 cut(s)	235, 314, 402, 2251, 2305, 2308, 2673
Ple19I	CGATCG	1 cut(s)	432
PleI	GAGTC	5 cut(s)	334, 885, 997, 1330, 2086
PluTI	GGCGCC	2 cut(s)	261, 387
PpsI	GAGTC	5 cut(s)	334, 885, 997, 1330, 2086
Ppu21I	YACGTR	1 cut(s)	1856
Psp124BI	GAGCTC	2 cut(s)	576, 2507
Psp6I	CCWGG	4 cut(s)	486, 1129, 2070, 2092
PspFI	CCCAGC	2 cut(s)	1674, 1999
PspGI	CCWGG	4 cut(s)	486, 1129, 2070, 2092
PspN4I	GGNNCC	7 cut(s)	259, 279, 385, 1366, 1680, 1721, 2319
PspOMI	GGGCCC	1 cut(s)	277
PspPI	GGNCC	5 cut(s)	277, 278, 1944, 2096, 2286
PspXI	VCTCGAGB	1 cut(s)	323
PstI	CTGCAG	3 cut(s)	314, 1363, 2311
PsuI	RGATCY	3 cut(s)	1426, 2296, 2473
PsyI	GACNNNGTC	1 cut(s)	2438
PteI	GCGCGC	1 cut(s)	354
PvuI	CGATCG	1 cut(s)	432
PvuII	CAGCTG	2 cut(s)	2306, 2671
RsaI	GTAC	8 cut(s)	485, 685, 864, 1346, 1858, 2091, 2185, 2732
RsaNI	GTAC	8 cut(s)	484, 684, 863, 1345, 1857, 2090, 2184, 2731
RseI	CAYNNNNRTG	2 cut(s)	1392, 1641
SacI	GAGCTC	2 cut(s)	576, 2507
SaqAI	TTAA	9 cut(s)	660, 936, 996, 1407, 1478, 1785, 1959, 2136, 2334
SatI	GCNGC	7 cut(s)	234, 313, 401, 2250, 2304, 2307, 2672
Sau96I	GGNCC	5 cut(s)	277, 278, 1944, 2096, 2286
ScaI	AGTACT	1 cut(s)	685
SchI	GAGTC	5 cut(s)	335, 886, 998, 1331, 2087
ScrFI	CCNGG	5 cut(s)	488, 569, 1131, 2072, 2094
SduI	GDGCHC	3 cut(s)	281, 576, 2507
SfaNI	GCATC	7 cut(s)	98, 495, 895, 923, 1088, 1396, 2562
SfcI	CTRYAG	7 cut(s)	310, 1340, 1359, 1689, 2307, 2508, 2517
SfoI	GGCGCC	2 cut(s)	259, 385
Sfr274I	CTCGAG	2 cut(s)	323, 359
SinI	GGWCC	2 cut(s)	1944, 2286
SlaI	CTCGAG	2 cut(s)	323, 359
SmiMI	CAYNNNNRTG	2 cut(s)	1392, 1641
SmlI	CTYRAG	6 cut(s)	323, 359, 935, 1091, 1871, 2621
SmoI	CTYRAG	6 cut(s)	323, 359, 935, 1091, 1871, 2621
SnaBI	TACGTA	1 cut(s)	1856
SphI	GCATGC	2 cut(s)	1037, 1900
SseBI	AGGCCT	1 cut(s)	2691
SsiI	CCGC	9 cut(s)	222, 234, 281, 304, 337, 400, 856, 1992, 2451
SspDI	GGCGCC	2 cut(s)	257, 383
SspI	AATATT	1 cut(s)	1957
SspMI	CTAG	3 cut(s)	131, 1178, 2693
SstI	GAGCTC	2 cut(s)	576, 2507
StuI	AGGCCT	1 cut(s)	2691
StyD4I	CCNGG	5 cut(s)	486, 567, 1129, 2070, 2092
StyI	CCWWGG	4 cut(s)	47, 456, 811, 2019
TaaI	ACNGT	6 cut(s)	1284, 1344, 1796, 2188, 2440, 2548
TaiI	ACGT	5 cut(s)	15, 300, 426, 564, 1858
TaqI	TCGA	8 cut(s)	92, 210, 324, 360, 372, 408, 428, 1137
TatI	WGTACW	3 cut(s)	683, 862, 2730
TauI	GCSGC	2 cut(s)	236, 403
TfiI	GAWTC	6 cut(s)	551, 1058, 1134, 1844, 2176, 2378
Tru1I	TTAA	9 cut(s)	660, 936, 996, 1407, 1478, 1785, 1959, 2136, 2334
Tru9I	TTAA	9 cut(s)	660, 936, 996, 1407, 1478, 1785, 1959, 2136, 2334
TscAI	CASTG	8 cut(s)	477, 603, 1289, 1303, 1363, 1567, 2401, 2443
TseFI	GTSAC	2 cut(s)	1095, 1510
TseI	GCWGC	5 cut(s)	312, 2249, 2303, 2306, 2671
Tsp45I	GTSAC	2 cut(s)	1095, 1510
TspRI	CASTG	8 cut(s)	477, 603, 1289, 1303, 1363, 1567, 2401, 2443
Tth111I	GACNNNGTC	1 cut(s)	2438
Van91I	CCANNNNNTGG	1 cut(s)	396
Vha464I	CTTAAG	1 cut(s)	935
VpaK11BI	GGWCC	2 cut(s)	1944, 2286
XapI	RAATTY	6 cut(s)	392, 632, 1540, 2053, 2367, 2558
XceI	RCATGY	3 cut(s)	1037, 1900, 2731
XhoI	CTCGAG	2 cut(s)	323, 359
XmnI	GAANNNNTTC	1 cut(s)	1815
XspI	CTAG	3 cut(s)	131, 1178, 2693
ZraI	GACGTC	2 cut(s)	13, 562
ZrmI	AGTACT	1 cut(s)	685
Zsp2I	ATGCAT	2 cut(s)	910, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.