Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

67918449 .. 67919957

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCCATTATTGGCCTAGGTCTCCTACTTTTCGCCCTTCTCATAGGAAATATGCAGAACTTTCTGCAGGCTCTTGGCCGGAGAAGGTTAGAAATGTCACTGAGACATTGTGACGTTGAGCAGTGGATGAGCCATAGACGTTTGCCAGATGAACTAGGGAGTGGTGTTGTCTGCAACCTGGCCTATCTCTCCGCTAGAGAGCAAGAGGCGGTGGAGACCAAAGAGCAAGAGATGGAGTCTCAATCCCTCCTACTTATCACAGCATCCCTTCACAGTACCATCACCAGTTCACCACCTTCCGGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

103

Amino Acids

11.3

Weight (kDa)

5.51

Isoelectric Point (pI)

73.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	192, 209
AcoI	YGGCCR	2 cut(s)	3, 76
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	177
Alw26I	GTCTC	4 cut(s)	26, 97, 209, 243
AoxI	GGCC	4 cut(s)	3, 13, 76, 180
AspA2I	CCTAGG	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	274, 282
AvrII	CCTAGG	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	2 cut(s)	226, 287
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	4 cut(s)	26, 97, 209, 243
BfaI	CTAG	3 cut(s)	17, 155, 195
BfmI	CTRYAG	1 cut(s)	65
BlnI	CCTAGG	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	272
BsaI	GGTCTC	2 cut(s)	26, 209
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	132, 263
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	285
BshFI	GGCC	4 cut(s)	5, 15, 78, 182
BsiSI	CCGG	2 cut(s)	79, 300
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	4 cut(s)	26, 97, 209, 243
BsnI	GGCC	4 cut(s)	5, 15, 78, 182
Bso31I	GGTCTC	2 cut(s)	26, 209
BspACI	CCGC	2 cut(s)	192, 209
BspANI	GGCC	4 cut(s)	5, 15, 78, 182
BspCNI	CTCAG	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	69
BspTNI	GGTCTC	2 cut(s)	26, 209
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	132, 263
BstMAI	GTCTC	4 cut(s)	26, 97, 209, 243
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	65
BsuRI	GGCC	4 cut(s)	5, 15, 78, 182
BtsCI	GGATG	2 cut(s)	132, 263
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	98, 128
Cac8I	GCNNGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	276
CviJI	RGCY	6 cut(s)	5, 15, 71, 78, 132, 182
CviKI_1	RGCY	6 cut(s)	5, 15, 71, 78, 132, 182
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	1 cut(s)	101
EaeI	YGGCCR	2 cut(s)	3, 76
Eco130I	CCWWGG	1 cut(s)	16
Eco31I	GGTCTC	2 cut(s)	26, 209
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaiI	YATR	3 cut(s)	44, 53, 135
FokI	GGATG	2 cut(s)	139, 250
FspBI	CTAG	3 cut(s)	17, 155, 195
HaeIII	GGCC	4 cut(s)	5, 15, 78, 182
HapII	CCGG	2 cut(s)	79, 300
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	2 cut(s)	79, 300
HphI	GGTGA	2 cut(s)	274, 282
Hpy166II	GTNNAC	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	4 cut(s)	47, 78, 278, 306
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	2 cut(s)	114, 139
HpyCH4V	TGCA	3 cut(s)	55, 67, 174
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	114, 139
LpnPI	CCDG	6 cut(s)	53, 92, 159, 164, 191, 298
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	3 cut(s)	17, 155, 195
MaeII	ACGT	2 cut(s)	114, 139
MaeIII	GTNAC	2 cut(s)	96, 110
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	2 cut(s)	199, 257
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	307
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	79, 300
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
NmuCI	GTSAC	2 cut(s)	96, 110
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	69
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	307
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	6 cut(s)	22, 89, 117, 142, 180, 298
SfaNI	GCATC	1 cut(s)	272
SfcI	CTRYAG	1 cut(s)	65
SsiI	CCGC	2 cut(s)	192, 209
SspMI	CTAG	3 cut(s)	17, 155, 195
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	2 cut(s)	117, 142
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TscAI	CASTG	2 cut(s)	105, 128
TseFI	GTSAC	2 cut(s)	96, 110
Tsp45I	GTSAC	2 cut(s)	96, 110
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	2 cut(s)	105, 128
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	3 cut(s)	17, 155, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.