RchiOBHm_Chr1g0327871

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
16844937 .. 16845430
494 bp
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UTR
Exon/CDS
Intron
PRQ55736

Sequence Viewer

Length: 381 bp
ATGGTTGGGGTTATTCCACAAGCCATATGCACTAGATATGGACTTGCTGTGGGTTCCAACCAATATGTTATCACTTGGATACATTTTGGAGAGAACAGCATGCAGAAATGTGAAATTATGCTCAATGATTTGATTGGTTCTAAGAGGACCAACACCAATATTAAAGCAGCCATAGCTCAGCCATCTCATACAGGTAGCTTTGAAAATATATTTTCCTACAGGTGTTATTACTTTTGGGGCTTGCTCTTGTATTACCAGAAGTCTACTATAATTATTTATTTACATTCTTATAGTTTGACATATCTTCTTGGATTCCTGAGTCTTAAGGTTGAGAGAGCACATTTGCATTCTCTGCAATTGCAGAACCACATGCAAATATGA

Protein Analysis

126

Amino Acids

14.54

Weight (kDa)

9.03

Isoelectric Point (pI)

19.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 263
AflII CTTAAG 1 cut(s) 323
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 2 cut(s) 176, 198
AluI AGCT 2 cut(s) 176, 198
Alw21I GWGCWC 1 cut(s) 340
ApeKI GCWGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 147
AvaII GGWCC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 340
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 190
BciVI GTATCC 1 cut(s) 72
BfaI CTAG 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 217
BfrI CTTAAG 1 cut(s) 323
BfuI GTATCC 1 cut(s) 72
BisI GCNGC 1 cut(s) 168
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 177
BseMII CTCAG 2 cut(s) 191, 308
BseXI GCAGC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 340
BsmI GAATGC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 340
Bsp1720I GCTNAGC 1 cut(s) 177
BspCNI CTCAG 2 cut(s) 190, 309
BspLI GGNNCC 1 cut(s) 55
BspTI CTTAAG 1 cut(s) 323
BstAFI CTTAAG 1 cut(s) 323
BstAPI GCANNNNNTGC 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 101, 242
BstDEI CTNAG 3 cut(s) 141, 177, 317
BstMWI GCNNNNNNNGC 2 cut(s) 173, 352
BstNSI RCATGY 2 cut(s) 103, 373
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 179
BsuI GTATCC 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 101, 242
Cfr13I GGNCC 1 cut(s) 147
CviAII CATG 2 cut(s) 100, 370
CviJI RGCY 6 cut(s) 23, 170, 176, 181, 198, 240
CviKI_1 RGCY 6 cut(s) 23, 170, 176, 181, 198, 240
DdeI CTNAG 3 cut(s) 141, 177, 317
Eco47I GGWCC 1 cut(s) 147
FaeI CATG 2 cut(s) 103, 373
FatI CATG 2 cut(s) 99, 369
FauNDI CATATG 1 cut(s) 26
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 33
GluI GCNGC 1 cut(s) 168
Hin1II CATG 2 cut(s) 103, 373
HinfI GANTC 2 cut(s) 312, 319
Hpy166II GTNNAC 1 cut(s) 264
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 264
HpyCH4V TGCA 6 cut(s) 30, 103, 346, 355, 361, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 352
HpyF3I CTNAG 3 cut(s) 141, 177, 317
Hsp92II CATG 2 cut(s) 103, 373
LpnPI CCDG 4 cut(s) 177, 205, 269, 329
Lsp1109I GCAGC 1 cut(s) 179
MaeI CTAG 1 cut(s) 33
MboII GAAGA 1 cut(s) 296
MfeI CAATTG 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 3 cut(s) 114, 270, 356
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 1 cut(s) 138
MseI TTAA 2 cut(s) 162, 324
MspCI CTTAAG 1 cut(s) 323
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 173, 352
NdeI CATATG 1 cut(s) 26
NlaIII CATG 2 cut(s) 103, 373
NlaIV GGNNCC 1 cut(s) 55
NspI RCATGY 2 cut(s) 103, 373
PaeI GCATGC 1 cut(s) 103
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 147
SaqAI TTAA 2 cut(s) 162, 324
SatI GCNGC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 1 cut(s) 328
SduI GDGCHC 1 cut(s) 340
SetI ASST 5 cut(s) 178, 196, 200, 224, 330
SfcI CTRYAG 1 cut(s) 217
SinI GGWCC 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SphI GCATGC 1 cut(s) 103
Sse9I AATT 3 cut(s) 114, 270, 356
SspI AATATT 1 cut(s) 160
SspMI CTAG 1 cut(s) 33
TasI AATT 3 cut(s) 114, 270, 356
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 2 cut(s) 162, 324
Tru9I TTAA 2 cut(s) 162, 324
TseI GCWGC 1 cut(s) 167
Vha464I CTTAAG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 147
XceI RCATGY 2 cut(s) 103, 373
XmiI GTMKAC 1 cut(s) 263
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.