Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

63775168 .. 63790375

Gene Structure 15208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCCTTGACAAGGATAAGGAAAGACCAAACGGTGAGATTTGTAGACTCTCCGTTCTTTCTCCATTTCTCTGAAACTCGGACAGCTATCTTGAATGATAATCGCAAGAGCAGCACAGTCCAAAGATTAGGGCCGACTTCAACGAGCTATGGCCTGATCAAGATCGAACGCCACAAATTTTTCCAGAAGCTTCACTATCTGGTCGACGACCCGGTAGGAAAATCTCCTTCTGGCCACCTCACGATGGCGCACCGGCACCTATCGCTCCCTATCCTCATCGCCGACGTCTTTCTAGGGTCAGATCTTTCAGCCGGCATCTCTGGGAAGAGAGTCGACGCCCCTTCACCGGAATTCACTGTTCACGACGACACTCCTAGCGTTTCTGGGTTCATCTCCGACATTTATGGGCATGGATTGACGAGAAATTGCTCTGTGGTTCGAAAGAAGGGAGTGACTAACTCGGGAGCTAGATGCTCAGTTATTCCACAAGCAATATGCACTAGATATGGACTTGCTGTGGGTTCCAACCAATATGTTATCACTTGGATACATTTTGGAGAGAACAGCATGCAGAAATGTGAAATTATGCTCAATGATTTGATTGGTTCTAAGAGGACCAACACCAATATTAAAGCAACCATAGCTCAGCCATCTCATACAGGACAACTTGGTGAGGCACAAAGAAGTTATTATGGGTTTAGTTCAGTTCATGGGGCTGTGAGTCCTGTGACAATGAGTTACAATCTTGTAGAGGAGGTGAAAGAAATGAATGTAAACCTCGACGGATTATCCGATGGAGCAGGTTGGAAAAAACATCACACAGATACTCTTGGACCTTCTTTCTTTGCCACCACTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

286

Amino Acids

31.41

Weight (kDa)

9.13

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	791
AccB1I	GGYRCC	1 cut(s)	255
AccI	GTMKAC	3 cut(s)	45, 204, 333
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	176, 350
AcyI	GRCGYC	2 cut(s)	285, 336
AfiI	CCNNNNNNNGG	3 cut(s)	12, 244, 346
AgsI	TTSAA	2 cut(s)	94, 141
AluBI	AGCT	5 cut(s)	86, 147, 190, 467, 644
AluI	AGCT	5 cut(s)	86, 147, 190, 467, 644
Ama87I	CYCGRG	1 cut(s)	460
AoxI	GGCC	4 cut(s)	3, 131, 151, 232
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	2 cut(s)	176, 350
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	3 cut(s)	131, 615, 833
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	4 cut(s)	46, 336, 683, 769
AsuII	TTCGAA	1 cut(s)	439
AvaI	CYCGRG	1 cut(s)	460
AvaII	GGWCC	2 cut(s)	615, 833
BalI	TGGCCA	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	3 cut(s)	238, 658, 788
BciVI	GTATCC	1 cut(s)	540
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	212
BfaI	CTAG	4 cut(s)	293, 375, 468, 501
BfuAI	ACCTGC	1 cut(s)	791
BfuI	GTATCC	1 cut(s)	540
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	1 cut(s)	112
BlpI	GCTNAGC	1 cut(s)	645
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	615, 833
BmeT110I	CYCGRG	1 cut(s)	460
BmgT120I	GGNCC	3 cut(s)	131, 615, 833
BmiI	GGNNCC	2 cut(s)	257, 523
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	2 cut(s)	324, 461
Bpu1102I	GCTNAGC	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	161
BsaHI	GRCGYC	2 cut(s)	285, 336
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 244, 346
Bse118I	RCCGGY	2 cut(s)	252, 311
Bse8I	GATNNNNATC	1 cut(s)	161
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	3 cut(s)	12, 244, 346
BseMII	CTCAG	2 cut(s)	489, 659
BseRI	GAGGAG	1 cut(s)	767
BseXI	GCAGC	1 cut(s)	123
BshFI	GGCC	4 cut(s)	5, 133, 153, 234
BshNI	GGYRCC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	460
BsiSI	CCGG	4 cut(s)	212, 253, 312, 347
BslI	CCNNNNNNNGG	3 cut(s)	12, 244, 346
BsnI	GGCC	4 cut(s)	5, 133, 153, 234
BsoBI	CYCGRG	1 cut(s)	460
Bsp119I	TTCGAA	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	156, 162, 301
Bsp1720I	GCTNAGC	1 cut(s)	645
BspANI	GGCC	4 cut(s)	5, 133, 153, 234
BspCNI	CTCAG	2 cut(s)	488, 658
BspLI	GGNNCC	2 cut(s)	257, 523
BspMI	ACCTGC	1 cut(s)	791
BspT104I	TTCGAA	1 cut(s)	439
BspT107I	GGYRCC	1 cut(s)	255
BsrFI	RCCGGY	2 cut(s)	252, 311
BssAI	RCCGGY	2 cut(s)	252, 311
BssMI	GATC	3 cut(s)	156, 162, 301
BssNI	GRCGYC	2 cut(s)	285, 336
Bst4CI	ACNGT	3 cut(s)	34, 118, 358
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	2 cut(s)	285, 336
BstBI	TTCGAA	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	313, 569
BstDEI	CTNAG	3 cut(s)	475, 609, 645
BstENI	CCTNNNNNAGG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	3 cut(s)	159, 165, 304
BstMBI	GATC	3 cut(s)	156, 162, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 262, 641
BstNSI	RCATGY	1 cut(s)	571
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	4 cut(s)	5, 133, 153, 234
BtgZI	GCGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	791
Cac8I	GCNNGC	2 cut(s)	313, 569
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	2 cut(s)	252, 311
Cfr13I	GGNCC	3 cut(s)	131, 615, 833
CseI	GACGC	1 cut(s)	344
CviAII	CATG	3 cut(s)	410, 568, 710
DdeI	CTNAG	3 cut(s)	475, 609, 645
DpnI	GATC	3 cut(s)	158, 164, 303
DpnII	GATC	3 cut(s)	156, 162, 301
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	615, 833
Eco88I	CYCGRG	1 cut(s)	460
EcoNI	CCTNNNNNAGG	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	350
FaeI	CATG	3 cut(s)	413, 571, 713
FatI	CATG	3 cut(s)	409, 567, 709
FbaI	TGATCA	1 cut(s)	156
FblI	GTMKAC	3 cut(s)	45, 204, 333
Fnu4HI	GCNGC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	4 cut(s)	293, 375, 468, 501
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	4 cut(s)	5, 133, 153, 234
HapII	CCGG	4 cut(s)	212, 253, 312, 347
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	2 cut(s)	285, 336
Hin1II	CATG	3 cut(s)	413, 571, 713
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	2 cut(s)	205, 334
HindII	GTYRAC	2 cut(s)	205, 334
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	47, 330, 721
HpaII	CCGG	4 cut(s)	212, 253, 312, 347
HphI	GGTGA	4 cut(s)	46, 336, 683, 769
Hpy166II	GTNNAC	5 cut(s)	46, 205, 334, 361, 775
Hpy188I	TCNGA	5 cut(s)	73, 81, 301, 397, 793
Hpy188III	TCNNGA	6 cut(s)	91, 160, 184, 241, 362, 462
Hpy8I	GTNNAC	5 cut(s)	46, 205, 334, 361, 775
Hpy99I	CGWCG	5 cut(s)	209, 287, 338, 368, 785
HpyAV	CCTTC	4 cut(s)	237, 351, 439, 846
HpyCH4III	ACNGT	3 cut(s)	34, 118, 358
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	498, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 262, 641
HpyF3I	CTNAG	3 cut(s)	475, 609, 645
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	2 cut(s)	285, 336
Hsp92II	CATG	3 cut(s)	413, 571, 713
HspAI	GCGC	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	156, 162, 301
LmnI	GCTCC	3 cut(s)	270, 464, 797
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	2 cut(s)	324, 461
MaeI	CTAG	4 cut(s)	293, 375, 468, 501
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	3 cut(s)	451, 727, 737
MalI	GATC	3 cut(s)	158, 164, 303
MboI	GATC	3 cut(s)	156, 162, 301
MboII	GAAGA	1 cut(s)	337
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	4 cut(s)	176, 350, 424, 582
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	3 cut(s)	41, 339, 730
MmeI	TCCRAC	3 cut(s)	420, 549, 785
MnlI	CCTC	7 cut(s)	248, 284, 606, 667, 745, 748, 788
Mox20I	TGGCCA	1 cut(s)	234
MroNI	GCCGGC	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	1 cut(s)	630
Msp20I	TGGCCA	1 cut(s)	234
MspI	CCGG	4 cut(s)	212, 253, 312, 347
MspR9I	CCNGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	111, 262, 641
NaeI	GCCGGC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	3 cut(s)	156, 162, 301
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	3 cut(s)	413, 571, 713
NlaIV	GGNNCC	2 cut(s)	257, 523
NmuCI	GTSAC	2 cut(s)	451, 727
NspI	RCATGY	1 cut(s)	571
NspV	TTCGAA	1 cut(s)	439
PaeI	GCATGC	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	789
PdiI	GCCGGC	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	3 cut(s)	41, 338, 729
PpsI	GAGTC	3 cut(s)	41, 338, 729
PspN4I	GGNNCC	2 cut(s)	257, 523
PspPI	GGNCC	3 cut(s)	131, 615, 833
PsuI	RGATCY	1 cut(s)	301
SalI	GTCGAC	2 cut(s)	203, 332
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	3 cut(s)	156, 162, 301
Sau96I	GGNCC	3 cut(s)	131, 615, 833
SchI	GAGTC	3 cut(s)	41, 339, 730
ScrFI	CCNGG	1 cut(s)	212
SfaNI	GCATC	2 cut(s)	324, 461
SfuI	TTCGAA	1 cut(s)	439
SinI	GGWCC	2 cut(s)	615, 833
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	4 cut(s)	176, 350, 424, 582
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	4 cut(s)	293, 375, 468, 501
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	34, 118, 358
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	5 cut(s)	165, 204, 333, 439, 780
TasI	AATT	4 cut(s)	176, 350, 424, 582
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	451, 727
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	2 cut(s)	451, 727
TspDTI	ATGAA	3 cut(s)	379, 698, 782
TspGWI	ACGGA	2 cut(s)	42, 798
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	615, 833
XagI	CCTNNNNNAGG	1 cut(s)	10
XapI	RAATTY	2 cut(s)	176, 350
XceI	RCATGY	1 cut(s)	571
XmiI	GTMKAC	3 cut(s)	45, 204, 333
XspI	CTAG	4 cut(s)	293, 375, 468, 501
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.