Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

53391617 .. 53400155

Gene Structure 8539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTATGTGAGTGATGGGAAAGTTGTGGGTTTCAATGGGTTGGCTAAGCAAGCTCTTCACGTTGTGCATAGGGTCAATGTGGGAGGTCATAAAGTTATTCCACAAGCAATATGCACTAGATATGGAGTTGCTGTGGGTTCCAACCAATATGTTATCACTTGGGAGAAGTCCCTAAATGTACCTGGGCCTGTTAATCAACTACTCTCGATTATGCAAAGAGATTTAATGAAATCAAGACCCCTCGTAAGCTATTGTGGAAGAAGAATCTTGGTACTTGTCAAGGTAAAGGATCTCAAGTGTTACGCTGTCATTTCATGTCCTCCCTTCTCCTCCATCAGCATGACCAGTTTCATTCTTAGCATGCTTGACCTCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATGCACTTAATCGGAGGATCAATTTTTGGATAAGCAAGCTTACAAAAGCACGGGTTGGAAAGAAAAATAAGAGAAATCAAATTGATGTTCTTCAATTGTCGCTTCCTGTGTATCCTTGTAAAGATGAGACCAAAGCTTCTGAATTAATCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

186

Amino Acids

20.61

Weight (kDa)

9.81

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	297, 431
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	2 cut(s)	180, 273
AgsI	TTSAA	2 cut(s)	34, 500
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	5 cut(s)	53, 249, 386, 445, 542
AluI	AGCT	5 cut(s)	53, 249, 386, 445, 542
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	2 cut(s)	297, 431
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	383, 386
AseI	ATTAAT	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	373, 395
BccI	CCATC	2 cut(s)	8, 341
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	528
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	2 cut(s)	384, 387
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	2 cut(s)	385, 388
Bme1390I	CCNGG	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	139, 399
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	397
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse1I	ACTGG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	319
BseXI	GCAGC	2 cut(s)	373, 395
BshFI	GGCC	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	187
Bso31I	GGTCTC	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	289, 376, 423
Bsp1720I	GCTNAGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	139, 399
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	2 cut(s)	297, 431
BspQI	GCTCTTC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	3 cut(s)	289, 376, 423
Bst2UI	CCWGG	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	51, 362, 443
BstDEI	CTNAG	2 cut(s)	45, 356
BstKTI	GATC	3 cut(s)	292, 379, 426
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	3 cut(s)	289, 376, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	373, 395
BstX2I	RGATCY	2 cut(s)	289, 376
BstYI	RGATCY	2 cut(s)	289, 376
BsuI	GTATCC	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	187
Cac8I	GCNNGC	3 cut(s)	51, 362, 443
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	179, 272
CviAII	CATG	3 cut(s)	315, 340, 361
CviJI	RGCY	7 cut(s)	44, 53, 187, 249, 386, 445, 542
CviKI_1	RGCY	7 cut(s)	44, 53, 187, 249, 386, 445, 542
CviQI	GTAC	2 cut(s)	179, 272
DdeI	CTNAG	2 cut(s)	45, 356
DpnI	GATC	3 cut(s)	291, 378, 425
DpnII	GATC	3 cut(s)	289, 376, 423
DraIII	CACNNNGTG	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	318, 343, 364
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	3 cut(s)	314, 339, 360
Fnu4HI	GCNGC	2 cut(s)	384, 387
Fsp4HI	GCNGC	2 cut(s)	384, 387
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	2 cut(s)	384, 387
HaeIII	GGCC	1 cut(s)	187
Hin1II	CATG	3 cut(s)	318, 343, 364
HindIII	AAGCTT	2 cut(s)	443, 540
HinfI	GANTC	1 cut(s)	264
Hpy188I	TCNGA	2 cut(s)	420, 547
Hpy188III	TCNNGA	2 cut(s)	205, 234
HpyAV	CCTTC	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	67, 114, 214, 383, 389, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	45, 356
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	318, 343, 364
Kzo9I	GATC	3 cut(s)	289, 376, 423
LguI	GCTCTTC	1 cut(s)	60
LpnPI	CCDG	5 cut(s)	168, 195, 201, 358, 525
Lsp1109I	GCAGC	2 cut(s)	373, 395
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	3 cut(s)	291, 378, 425
MboI	GATC	3 cut(s)	289, 376, 423
MboII	GAAGA	4 cut(s)	47, 270, 273, 488
MfeI	CAATTG	1 cut(s)	500
MflI	RGATCY	2 cut(s)	289, 376
MluCI	AATT	4 cut(s)	427, 486, 500, 548
MmeI	TCCRAC	2 cut(s)	165, 442
MnlI	CCTC	6 cut(s)	77, 251, 330, 340, 380, 414
MseI	TTAA	4 cut(s)	192, 224, 414, 551
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	3 cut(s)	289, 376, 423
NlaIII	CATG	3 cut(s)	318, 343, 364
NlaIV	GGNNCC	2 cut(s)	139, 399
NspI	RCATGY	1 cut(s)	364
PaeI	GCATGC	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	385, 388
PshBI	ATTAAT	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	139, 399
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	2 cut(s)	289, 376
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	2 cut(s)	180, 273
RsaNI	GTAC	2 cut(s)	179, 272
RseI	CAYNNNNRTG	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	4 cut(s)	192, 224, 414, 551
SatI	GCNGC	2 cut(s)	384, 387
Sau3AI	GATC	3 cut(s)	289, 376, 423
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	4 cut(s)	427, 486, 500, 548
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	181
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	206, 555
TasI	AATT	4 cut(s)	427, 486, 500, 548
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	4 cut(s)	192, 224, 414, 551
Tru9I	TTAA	4 cut(s)	192, 224, 414, 551
TseI	GCWGC	2 cut(s)	383, 386
TspDTI	ATGAA	3 cut(s)	242, 303, 340
VspI	ATTAAT	1 cut(s)	551
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.