Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

30807620 .. 30812890

Gene Structure 5271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGGCTTGGCAAAAGGGTATTTGTTGTTCTTGTTGGGGTATATGATGATGGGACCATGGACTGTGGCACGATCCCATTCACTGTGAGCATGCCACCAAAGGGTGCCTTCCTCCTCCGAGAAAATGATCTTTTGGGTGAACTTGGCCCCTGGTTGAATTGGGCACTGTGTGATATACTCTGGTCCGTCCGACCATGGATATCTTGGTTGCGAAACACCATGCCTGCTCATGATCAAGTTATTCGACAAGCAATATGCACTAGATATGGACTTGTTGTGGGTTCCAACCAATATGTTATCACTTGGATACATTTTGGAGAGAACAGCATGCAGAAATGTGAAATTATGCTCAATGATTTGATTGGTTCTAAGAGGACCAACACCAATATTAAAGCAACCATAGCTCAGCCATCTCATACAGCAATTATAATGCAATTTCAAGATCAGAAGAGCTGGACCTCCCAAGATCTTGCAGCTGCAGTTGAGGTTCCAATAGATACTAGTGGATTGCGAGGCAACTCTTATTTGACCGGAGCACTGTCCCCTGAAATGTGTCAATTAACTGGTCTGTGGTACTTGCTTCGCTATGAAGTTAATATAGTAGAATTTGTTGTAGGCTTGCCAGCTGCAGATGCTCCCAAGAAAATAAGTAGAGTCCACAAGCGTGGTTGGAGGTACATTCTAAGCTTATCGAAGTTGACTGAAAGTCTTCCAAGTGTGAGTAAACCAACTGAAACTACTCCAGCAACACCTGAAGTTCAACCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

256

Amino Acids

28.62

Weight (kDa)

8.25

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	428
AccB1I	GGYRCC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	605
AdeI	CACNNNGTG	1 cut(s)	170
AfaI	GTAC	2 cut(s)	575, 677
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	157, 440, 761
AhdI	GACNNNNNGTC	1 cut(s)	705
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	149
AleI	CACNNNNGTG	1 cut(s)	663
AluBI	AGCT	6 cut(s)	404, 453, 476, 626, 687, 767
AluI	AGCT	6 cut(s)	404, 453, 476, 626, 687, 767
Alw21I	GWGCWC	1 cut(s)	538
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	3 cut(s)	473, 476, 626
ApoI	RAATTY	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	708
AspS9I	GGNCC	5 cut(s)	54, 146, 183, 375, 456
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	4 cut(s)	54, 183, 375, 456
BaeGI	GKGCMC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	3 cut(s)	463, 485, 613
BccI	CCATC	2 cut(s)	44, 418
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	300
BclI	TGATCA	1 cut(s)	232
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	2 cut(s)	261, 501
BfmI	CTRYAG	2 cut(s)	477, 627
BfuI	GTATCC	1 cut(s)	300
BglII	AGATCT	1 cut(s)	466
BisI	GCNGC	3 cut(s)	474, 477, 627
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	3 cut(s)	475, 478, 628
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	4 cut(s)	54, 183, 375, 456
BmeRI	GACNNNNNGTC	1 cut(s)	705
BmgT120I	GGNCC	5 cut(s)	54, 146, 183, 375, 456
BmiI	GGNNCC	5 cut(s)	55, 106, 148, 283, 489
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	701
BpmI	CTGGAG	1 cut(s)	726
Bpu1102I	GCTNAGC	1 cut(s)	405
BsaJI	CCNNGG	3 cut(s)	57, 149, 194
BsaWI	WCCGGW	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	57, 149, 194
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	463, 485, 613
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	1 cut(s)	531
BslFI	GGGAC	2 cut(s)	67, 526
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	67, 526
BsnI	GGCC	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	166, 538
Bsp143I	GATC	5 cut(s)	72, 127, 232, 442, 466
Bsp1720I	GCTNAGC	1 cut(s)	405
Bsp19I	CCATGG	2 cut(s)	57, 194
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	5 cut(s)	55, 106, 148, 283, 489
BspMAI	CTGCAG	2 cut(s)	481, 631
BspPI	GGATC	1 cut(s)	67
BspQI	GCTCTTC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	3 cut(s)	57, 149, 194
BssMI	GATC	5 cut(s)	72, 127, 232, 442, 466
BssT1I	CCWWGG	2 cut(s)	57, 194
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	4 cut(s)	65, 85, 168, 540
Bst6I	CTCTTC	1 cut(s)	443
BstC8I	GCNNGC	5 cut(s)	92, 225, 329, 620, 624
BstDEI	CTNAG	3 cut(s)	369, 405, 683
BstDSI	CCRYGG	2 cut(s)	57, 194
BstKTI	GATC	5 cut(s)	75, 130, 235, 445, 469
BstMBI	GATC	5 cut(s)	72, 127, 232, 442, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 632
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	2 cut(s)	94, 331
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	2 cut(s)	477, 627
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	463, 485, 613
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	1 cut(s)	466
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	147
BtgI	CCRYGG	2 cut(s)	57, 194
BtsIMutI	CAGTG	3 cut(s)	81, 164, 536
Cac8I	GCNNGC	5 cut(s)	92, 225, 329, 620, 624
CciI	TCATGA	1 cut(s)	229
Cfr13I	GGNCC	5 cut(s)	54, 146, 183, 375, 456
Csp6I	GTAC	2 cut(s)	574, 676
CviAII	CATG	6 cut(s)	58, 91, 195, 220, 230, 328
CviQI	GTAC	2 cut(s)	574, 676
DdeI	CTNAG	3 cut(s)	369, 405, 683
DpnI	GATC	5 cut(s)	74, 129, 234, 444, 468
DpnII	GATC	5 cut(s)	72, 127, 232, 442, 466
DraIII	CACNNNGTG	1 cut(s)	170
DriI	GACNNNNNGTC	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	443
Eam1105I	GACNNNNNGTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	443
Eco130I	CCWWGG	2 cut(s)	57, 194
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	4 cut(s)	54, 183, 375, 456
EcoRII	CCWGG	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	57, 194
ErhI	CCWWGG	2 cut(s)	57, 194
FaeI	CATG	6 cut(s)	61, 94, 198, 223, 233, 331
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	2 cut(s)	67, 526
FatI	CATG	6 cut(s)	57, 90, 194, 219, 229, 327
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	474, 477, 627
Fsp4HI	GCNGC	3 cut(s)	474, 477, 627
FspBI	CTAG	2 cut(s)	261, 501
GluI	GCNGC	3 cut(s)	474, 477, 627
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	1 cut(s)	531
Hin1II	CATG	6 cut(s)	61, 94, 198, 223, 233, 331
HincII	GTYRAC	1 cut(s)	699
HindII	GTYRAC	1 cut(s)	699
HindIII	AAGCTT	1 cut(s)	685
HinfI	GANTC	1 cut(s)	654
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	4 cut(s)	140, 658, 699, 725
Hpy188I	TCNGA	3 cut(s)	119, 191, 447
Hpy188III	TCNNGA	2 cut(s)	230, 440
Hpy8I	GTNNAC	4 cut(s)	140, 658, 699, 725
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	4 cut(s)	65, 85, 168, 540
HpyCH4V	TGCA	6 cut(s)	258, 331, 433, 473, 479, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 632
HpyF3I	CTNAG	3 cut(s)	369, 405, 683
Hsp92II	CATG	6 cut(s)	61, 94, 198, 223, 233, 331
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	5 cut(s)	72, 127, 232, 442, 466
LguI	GCTCTTC	1 cut(s)	443
LmnI	GCTCC	2 cut(s)	533, 640
Lsp1109I	GCAGC	3 cut(s)	463, 485, 613
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	2 cut(s)	261, 501
MalI	GATC	5 cut(s)	74, 129, 234, 444, 468
MboI	GATC	5 cut(s)	72, 127, 232, 442, 466
MboII	GAAGA	2 cut(s)	460, 701
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	2 cut(s)	166, 538
MluCI	AATT	6 cut(s)	157, 342, 423, 434, 557, 605
MlyI	GAGTC	1 cut(s)	663
MmeI	TCCRAC	3 cut(s)	214, 309, 650
MnlI	CCTC	7 cut(s)	122, 125, 366, 469, 478, 506, 666
MroXI	GAANNNNTTC	1 cut(s)	708
MseI	TTAA	3 cut(s)	390, 560, 594
MslI	CAYNNNNRTG	1 cut(s)	663
MspA1I	CMGCKG	2 cut(s)	476, 626
MspI	CCGG	1 cut(s)	531
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	401, 632
NcoI	CCATGG	2 cut(s)	57, 194
NdeII	GATC	5 cut(s)	72, 127, 232, 442, 466
NlaIII	CATG	6 cut(s)	61, 94, 198, 223, 233, 331
NlaIV	GGNNCC	5 cut(s)	55, 106, 148, 283, 489
NspI	RCATGY	2 cut(s)	94, 331
OliI	CACNNNNGTG	1 cut(s)	663
PaeI	GCATGC	2 cut(s)	94, 331
PagI	TCATGA	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	708
PkrI	GCNGC	3 cut(s)	475, 478, 628
PleI	GAGTC	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	662
PsiI	TTATAA	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	5 cut(s)	55, 106, 148, 283, 489
PspPI	GGNCC	5 cut(s)	54, 146, 183, 375, 456
PsrI	GAACNNNNNNTAC	2 cut(s)	12, 44
PstI	CTGCAG	2 cut(s)	481, 631
PsuI	RGATCY	1 cut(s)	466
PvuII	CAGCTG	2 cut(s)	476, 626
RsaI	GTAC	2 cut(s)	575, 677
RsaNI	GTAC	2 cut(s)	574, 676
RseI	CAYNNNNRTG	1 cut(s)	663
SapI	GCTCTTC	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	390, 560, 594
SatI	GCNGC	3 cut(s)	474, 477, 627
Sau3AI	GATC	5 cut(s)	72, 127, 232, 442, 466
Sau96I	GGNCC	5 cut(s)	54, 146, 183, 375, 456
SchI	GAGTC	1 cut(s)	663
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	166, 538
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	2 cut(s)	477, 627
SinI	GGWCC	4 cut(s)	54, 183, 375, 456
SmiMI	CAYNNNNRTG	1 cut(s)	663
SpeI	ACTAGT	1 cut(s)	500
SphI	GCATGC	2 cut(s)	94, 331
Sse9I	AATT	6 cut(s)	157, 342, 423, 434, 557, 605
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	2 cut(s)	261, 501
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	57, 194
TaaI	ACNGT	4 cut(s)	65, 85, 168, 540
TaqI	TCGA	2 cut(s)	244, 692
TasI	AATT	6 cut(s)	157, 342, 423, 434, 557, 605
Tru1I	TTAA	3 cut(s)	390, 560, 594
Tru9I	TTAA	3 cut(s)	390, 560, 594
TscAI	CASTG	3 cut(s)	88, 171, 543
TseI	GCWGC	3 cut(s)	473, 476, 626
TspDTI	ATGAA	1 cut(s)	603
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	3 cut(s)	88, 171, 543
VpaK11BI	GGWCC	4 cut(s)	54, 183, 375, 456
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	2 cut(s)	94, 331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	2 cut(s)	261, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.