Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000159

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

762021 .. 765823

Gene Structure 3803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_159G00433030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCTTGGTCAAAGGGTTTGTGGTTCGAAAGTCGTAACTTTGGATTTGAGGGTGTATTAGGTCCAATGGTTAGGGAGTACTTGATTTGGGTCGATCTTGAAAAGCTTGTTATTCCACAAGCAATATGCACTAGATATGGACTTGCTGTGGGTTCCAACCAATATGTTATCACTTGGGAGAAGTCCCTAAATGTACCTGGGCTCGTTAATCAACTACTCTCTGATTATGCAAAGAGATTTAATGAAATCAAGACCCCTCGTAAGCTATTGTGGAAGAAGAATCTTGGTACTGTCAAGGTAAAGGATCTCAAGTGTTACGCTGTCATTTCATGTCCTCCCTTCTCCTCCATCAGCATGACCAGTTTCATTCTTAGCATGCTTGACCTCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATGCACTTAATCAGAGGATCAATTTTTGGATAAGCAAGCAAGGTAAGAGACTAAAAGATTCTAAAACAGGAACTAAAGACACCAGTAAAATAGATCGAGAGAATAAGCTTCTTCAACGGCCTCGGAGCGGGGATGCAGAGGGAATATCGAAGGCATCCGGTGGACAGGGGAGGCCGTCCTTGGAGAGAATGAAAACAAGGGAGGTTGGGGGTCCGTCGACCCAAGCTTCCGCGCACAACCTCCGCCCGGCAAGCGAGGCAAGGCACCGCCGCCCGGCAAAAGGTGTTGATGTTGGTGACAAGTTTCAGTTCGAAAGACTTGGCTATTTTGTGGTCGACCAAGATTCAACTCCCGAGAAGCTTGTGTTTAATCGGACGGTCACACAGCGAGATAGCTACAAGAATGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

277

Amino Acids

31.16

Weight (kDa)

9.88

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	684
AccBSI	CCGCTC	1 cut(s)	549
AccI	GTMKAC	2 cut(s)	638, 756
AccII	CGCG	1 cut(s)	653
AciI	CCGC	5 cut(s)	549, 651, 664, 688, 691
AclWI	GGATC	2 cut(s)	312, 446
AfaI	GTAC	3 cut(s)	80, 195, 289
AfiI	CCNNNNNNNGG	4 cut(s)	548, 667, 694, 701
AgsI	TTSAA	3 cut(s)	101, 536, 768
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	7 cut(s)	106, 265, 401, 529, 647, 781, 816
AluI	AGCT	7 cut(s)	106, 265, 401, 529, 647, 781, 816
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	2 cut(s)	312, 446
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	2 cut(s)	539, 593
ApeKI	GCWGC	2 cut(s)	398, 401
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	2 cut(s)	62, 632
AsuC2I	CCSGG	2 cut(s)	668, 695
AsuHPI	GGTGA	1 cut(s)	728
AsuII	TTCGAA	2 cut(s)	27, 732
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	2 cut(s)	62, 632
BanI	GGYRCC	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	388, 410
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	2 cut(s)	554, 580
BciT130I	CCWGG	1 cut(s)	198
BcnI	CCSGG	2 cut(s)	668, 695
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	402
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	3 cut(s)	399, 402, 691
BlsI	GCNGC	3 cut(s)	400, 403, 692
BmcAI	AGTACT	1 cut(s)	80
Bme1390I	CCNGG	3 cut(s)	198, 668, 695
Bme18I	GGWCC	2 cut(s)	62, 632
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	2 cut(s)	62, 632
BmiI	GGNNCC	4 cut(s)	154, 414, 633, 686
BmrFI	CCNGG	3 cut(s)	198, 668, 695
BmsI	GCATC	3 cut(s)	412, 544, 584
Bpu14I	TTCGAA	2 cut(s)	27, 732
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	2 cut(s)	668, 695
BsaJI	CCNNGG	3 cut(s)	197, 542, 600
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	4 cut(s)	548, 667, 694, 701
Bse1I	ACTGG	2 cut(s)	360, 504
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	3 cut(s)	197, 542, 600
BseGI	GGATG	2 cut(s)	559, 575
BseLI	CCNNNNNNNGG	4 cut(s)	548, 667, 694, 701
BseNI	ACTGG	2 cut(s)	360, 504
BseRI	GAGGAG	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	388, 410
Bsh1236I	CGCG	1 cut(s)	653
BshFI	GGCC	2 cut(s)	541, 595
BshNI	GGYRCC	1 cut(s)	684
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	3 cut(s)	579, 668, 695
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	4 cut(s)	548, 667, 694, 701
BsmAI	GTCTC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	541, 595
BsoBI	CYCGRG	1 cut(s)	773
Bsp119I	TTCGAA	2 cut(s)	27, 732
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	5 cut(s)	94, 304, 391, 438, 514
BspACI	CCGC	5 cut(s)	549, 651, 664, 688, 691
BspANI	GGCC	2 cut(s)	541, 595
BspFNI	CGCG	1 cut(s)	653
BspLI	GGNNCC	4 cut(s)	154, 414, 633, 686
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	2 cut(s)	312, 446
BspT104I	TTCGAA	2 cut(s)	27, 732
BspT107I	GGYRCC	1 cut(s)	684
BsrBI	CCGCTC	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	360, 504
BssECI	CCNNGG	3 cut(s)	197, 542, 600
BssMI	GATC	5 cut(s)	94, 304, 391, 438, 514
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	292, 799
BstBI	TTCGAA	2 cut(s)	27, 732
BstC8I	GCNNGC	3 cut(s)	377, 458, 673
BstDEI	CTNAG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	559, 575
BstFNI	CGCG	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	5 cut(s)	97, 307, 394, 441, 517
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	5 cut(s)	94, 304, 391, 438, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	672, 677
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	3 cut(s)	196, 666, 693
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	653
BstV1I	GCAGC	2 cut(s)	388, 410
BstX2I	RGATCY	2 cut(s)	304, 391
BstYI	RGATCY	2 cut(s)	304, 391
BsuRI	GGCC	2 cut(s)	541, 595
BtsCI	GGATG	2 cut(s)	559, 575
Cac8I	GCNNGC	3 cut(s)	377, 458, 673
CfoI	GCGC	1 cut(s)	655
Cfr13I	GGNCC	2 cut(s)	62, 632
Csp6I	GTAC	3 cut(s)	79, 194, 288
CviAII	CATG	3 cut(s)	330, 355, 376
CviQI	GTAC	3 cut(s)	79, 194, 288
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	5 cut(s)	96, 306, 393, 440, 516
DpnII	GATC	5 cut(s)	94, 304, 391, 438, 514
EciI	GGCGGA	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	62, 632
Eco88I	CYCGRG	1 cut(s)	773
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	600
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	3 cut(s)	333, 358, 379
FaiI	YATR	7 cut(s)	127, 138, 165, 228, 331, 356, 377
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	3 cut(s)	329, 354, 375
FauI	CCCGC	1 cut(s)	542
FblI	GTMKAC	2 cut(s)	638, 756
Fnu4HI	GCNGC	3 cut(s)	399, 402, 691
FokI	GGATG	2 cut(s)	562, 566
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	3 cut(s)	399, 402, 691
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	3 cut(s)	399, 402, 691
HaeIII	GGCC	2 cut(s)	541, 595
HapII	CCGG	3 cut(s)	579, 668, 695
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	3 cut(s)	333, 358, 379
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	2 cut(s)	639, 757
HindII	GTYRAC	2 cut(s)	639, 757
HindIII	AAGCTT	4 cut(s)	104, 527, 645, 779
HinfI	GANTC	3 cut(s)	280, 479, 764
HpaII	CCGG	3 cut(s)	579, 668, 695
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	3 cut(s)	584, 639, 757
Hpy188I	TCNGA	4 cut(s)	223, 435, 546, 795
Hpy188III	TCNNGA	4 cut(s)	98, 250, 518, 773
Hpy8I	GTNNAC	3 cut(s)	584, 639, 757
Hpy99I	CGWCG	1 cut(s)	640
HpyAV	CCTTC	2 cut(s)	349, 565
HpyCH4III	ACNGT	2 cut(s)	292, 799
HpyCH4V	TGCA	6 cut(s)	129, 230, 398, 404, 425, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	672, 677
HpyF3I	CTNAG	1 cut(s)	371
Hsp92II	CATG	3 cut(s)	333, 358, 379
HspAI	GCGC	1 cut(s)	653
Kzo9I	GATC	5 cut(s)	94, 304, 391, 438, 514
LmnI	GCTCC	1 cut(s)	546
LpnPI	CCDG	9 cut(s)	183, 210, 373, 474, 517, 572, 592, 681, 708
Lsp1109I	GCAGC	2 cut(s)	388, 410
LweI	GCATC	3 cut(s)	412, 544, 584
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	4 cut(s)	35, 314, 716, 799
MalI	GATC	5 cut(s)	96, 306, 393, 440, 516
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	5 cut(s)	94, 304, 391, 438, 514
MboII	GAAGA	3 cut(s)	286, 289, 524
MflI	RGATCY	2 cut(s)	304, 391
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	442
MmeI	TCCRAC	1 cut(s)	180
MseI	TTAA	4 cut(s)	207, 240, 429, 789
MslI	CAYNNNNRTG	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	3 cut(s)	579, 668, 695
MspR9I	CCNGG	3 cut(s)	198, 668, 695
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	653
MwoI	GCNNNNNNNGC	2 cut(s)	672, 677
NciI	CCSGG	2 cut(s)	668, 695
NdeII	GATC	5 cut(s)	94, 304, 391, 438, 514
NlaIII	CATG	3 cut(s)	333, 358, 379
NlaIV	GGNNCC	4 cut(s)	154, 414, 633, 686
NmuCI	GTSAC	2 cut(s)	716, 799
NspI	RCATGY	1 cut(s)	379
NspV	TTCGAA	2 cut(s)	27, 732
PaeI	GCATGC	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	280, 479, 764
PkrI	GCNGC	3 cut(s)	400, 403, 692
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	4 cut(s)	154, 414, 633, 686
PspPI	GGNCC	2 cut(s)	62, 632
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	304, 391
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	3 cut(s)	80, 195, 289
RsaNI	GTAC	3 cut(s)	79, 194, 288
RseI	CAYNNNNRTG	1 cut(s)	353
SalI	GTCGAC	2 cut(s)	637, 755
SaqAI	TTAA	4 cut(s)	207, 240, 429, 789
SatI	GCNGC	3 cut(s)	399, 402, 691
Sau3AI	GATC	5 cut(s)	94, 304, 391, 438, 514
Sau96I	GGNCC	2 cut(s)	62, 632
ScaI	AGTACT	1 cut(s)	80
ScrFI	CCNGG	3 cut(s)	198, 668, 695
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	3 cut(s)	412, 544, 584
SfcI	CTRYAG	1 cut(s)	402
SfuI	TTCGAA	2 cut(s)	27, 732
SinI	GGWCC	2 cut(s)	62, 632
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	379
Sse9I	AATT	1 cut(s)	442
SsiI	CCGC	5 cut(s)	549, 651, 664, 688, 691
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	196, 666, 693
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	292, 799
TaqI	TCGA	7 cut(s)	27, 93, 517, 569, 638, 732, 756
TasI	AATT	1 cut(s)	442
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	3 cut(s)	280, 479, 764
Tru1I	TTAA	4 cut(s)	207, 240, 429, 789
Tru9I	TTAA	4 cut(s)	207, 240, 429, 789
TseFI	GTSAC	2 cut(s)	716, 799
TseI	GCWGC	2 cut(s)	398, 401
Tsp45I	GTSAC	2 cut(s)	716, 799
TspDTI	ATGAA	4 cut(s)	258, 318, 355, 626
TspGWI	ACGGA	1 cut(s)	624
VpaK11BI	GGWCC	2 cut(s)	62, 632
XceI	RCATGY	1 cut(s)	379
XmiI	GTMKAC	2 cut(s)	638, 756
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.