Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

36196271 .. 36196847

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034065

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTCGCAGCTTCGTTCCGGACTCGTCCACTTCAGCTCGCTCAATTTCACTCCAAAACCAAAACCCCAATCCCAATTCCCCCCAAATTTACAAAACCGCTAAGGTTTTCCGGTGGCCGTCCTAGTATGAGTTCCAGATCCGCGACCTGGGCACCCACATGGTACGACTCCATTTCCAGAGCTTCAATTCTTGTAATTTTGATTGGAATAGTGCTCAGTTTCATGTCTTGGTCAATGGGTCGTTCTGCACCTAAGGACCTTGTTGCTAATACTGCAATGTATGTGAGTGATGGGAAAGTTGTGGGTTTCAATGGGTTGGCTAAGCAAGCTCTTCACTTTGTGCATAGGGTCAATGTGGGAGGTCATAAAGTGACGCCCTTTAATGATATTCTGTGGAGGACTTGGATTGCTGATTTAAATAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604 Malectin_like

Protein Analysis

142

Amino Acids

15.61

Weight (kDa)

11.29

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	151
AccII	CGCG	1 cut(s)	143
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	2 cut(s)	98, 141
AclWI	GGATC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	374
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgsI	TTSAA	2 cut(s)	186, 310
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	5 cut(s)	11, 37, 182, 329, 423
AluI	AGCT	5 cut(s)	11, 37, 182, 329, 423
Alw21I	GWGCWC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	132
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	256
AxyI	CCTNAGG	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	148
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	1 cut(s)	9
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	2 cut(s)	18, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse21I	CCTNAGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	19, 111
BslI	CCNNNNNNNGG	1 cut(s)	147
BsnI	GGCC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	154, 216
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	137
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	2 cut(s)	98, 141
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	132
BspQI	GCTCTTC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	137
BssNI	GRCGYC	1 cut(s)	374
Bst2UI	CCWGG	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	39, 327
BstDEI	CTNAG	4 cut(s)	101, 215, 252, 321
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 272, 326
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	39, 327
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	2 cut(s)	159, 223
CviJI	RGCY	7 cut(s)	11, 37, 117, 182, 320, 329, 423
CviKI_1	RGCY	7 cut(s)	11, 37, 117, 182, 320, 329, 423
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	4 cut(s)	101, 215, 252, 321
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
DraI	TTTAAA	1 cut(s)	417
DraIII	CACNNNGTG	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	17
Eco81I	CCTNAGG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	146
FaeI	CATG	2 cut(s)	162, 226
FaiI	YATR	6 cut(s)	128, 160, 224, 282, 345, 366
FatI	CATG	2 cut(s)	158, 222
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	2 cut(s)	19, 111
HgaI	GACGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	2 cut(s)	162, 226
HinfI	GANTC	2 cut(s)	22, 167
HpaII	CCGG	2 cut(s)	19, 111
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188III	TCNNGA	3 cut(s)	19, 135, 177
Hpy8I	GTNNAC	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	248, 275, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 272, 326
HpyF3I	CTNAG	4 cut(s)	101, 215, 252, 321
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	162, 226
Kpn2I	TCCGGA	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	137
LguI	GCTCTTC	1 cut(s)	336
LpnPI	CCDG	6 cut(s)	32, 124, 133, 148, 160, 190
Lsp1109I	GCAGC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	2 cut(s)	154, 216
MluCI	AATT	5 cut(s)	44, 75, 86, 186, 195
MlyI	GAGTC	2 cut(s)	16, 161
MnlI	CCTC	2 cut(s)	353, 390
MroI	TCCGGA	1 cut(s)	18
MseI	TTAA	2 cut(s)	381, 416
MslI	CAYNNNNRTG	1 cut(s)	157
MspI	CCGG	2 cut(s)	19, 111
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	3 cut(s)	149, 272, 326
NdeII	GATC	1 cut(s)	137
NlaIII	CATG	2 cut(s)	162, 226
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	336
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	2 cut(s)	16, 161
PpsI	GAGTC	2 cut(s)	16, 161
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	381, 416
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	2 cut(s)	16, 161
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	2 cut(s)	154, 216
SinI	GGWCC	1 cut(s)	256
SmiI	ATTTAAAT	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	157
Sse9I	AATT	5 cut(s)	44, 75, 86, 186, 195
SsiI	CCGC	2 cut(s)	98, 141
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	146
SwaI	ATTTAAAT	1 cut(s)	417
TasI	AATT	5 cut(s)	44, 75, 86, 186, 195
Tru1I	TTAA	2 cut(s)	381, 416
Tru9I	TTAA	2 cut(s)	381, 416
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	86
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.