Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

46175051 .. 46178439

Gene Structure 3389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTCGCCGCTTCGTTCCGGACTCGTCCACTTCAGCTCGCTCAATTTCACTCCGAAACCAAAATCCCAATCCCAATTCCCCCTAAATTTACCAAACCGCTAAGGTTTTCCGGTGGCCGTCCTAGTATGAGTTCCGGATCCGCGACACGGGCACCCACATGCTACTTTACTGTATTTGGTAAAAGTCCTCTATATTTCGATTCTCTTGGTTGGAATTTGAGTTCACGGTGGATTGCGAGGCAACTCTTTGACCGGAGCACCGTCCCCGATATGTGTCAATTAACTGGTCCTGTGGTACTTGTTAAGTTGAAGATTGTGAGGGACGAGAAGAAAAGGGTAAAGTTTGTATGCCGACCAATTCATCGTAAAGGGTTGGTTTGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.48

Weight (kDa)

10.8

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	151
AccII	CGCG	1 cut(s)	143
AccIII	TCCGGA	2 cut(s)	18, 134
AciI	CCGC	3 cut(s)	9, 98, 141
AclWI	GGATC	2 cut(s)	132, 145
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	86, 214
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	310
AloI	GAACNNNNNNTCC	2 cut(s)	205, 237
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw21I	GWGCWC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	132, 145
Aor13HI	TCCGGA	2 cut(s)	18, 134
AoxI	GGCC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	86, 214
AspS9I	GGNCC	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	102
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	139, 153
Bpu10I	CCTNAGC	1 cut(s)	101
BsaWI	WCCGGW	4 cut(s)	18, 110, 134, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	289
BseAI	TCCGGA	2 cut(s)	18, 134
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	19, 111, 135, 253
BslFI	GGGAC	2 cut(s)	248, 335
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmFI	GGGAC	2 cut(s)	248, 335
BsnI	GGCC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	154, 260
Bsp13I	TCCGGA	2 cut(s)	18, 134
Bsp143I	GATC	1 cut(s)	137
BspACI	CCGC	3 cut(s)	9, 98, 141
BspANI	GGCC	1 cut(s)	117
BspEI	TCCGGA	2 cut(s)	18, 134
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	2 cut(s)	139, 153
BspPI	GGATC	2 cut(s)	132, 145
BspT107I	GGYRCC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	137
Bst4CI	ACNGT	3 cut(s)	172, 228, 262
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	101
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	1 cut(s)	159
CviJI	RGCY	2 cut(s)	37, 117
CviKI_1	RGCY	2 cut(s)	37, 117
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	17
FaeI	CATG	1 cut(s)	162
FaiI	YATR	5 cut(s)	128, 160, 193, 272, 349
FaqI	GGGAC	2 cut(s)	248, 335
FatI	CATG	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	4 cut(s)	19, 111, 135, 253
Hin1II	CATG	1 cut(s)	162
HinfI	GANTC	2 cut(s)	22, 200
HpaII	CCGG	4 cut(s)	19, 111, 135, 253
Hpy166II	GTNNAC	2 cut(s)	29, 224
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	19, 135
Hpy8I	GTNNAC	2 cut(s)	29, 224
HpyCH4III	ACNGT	3 cut(s)	172, 228, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	162
Kpn2I	TCCGGA	2 cut(s)	18, 134
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	6 cut(s)	32, 124, 148, 266, 270, 303
MaeI	CTAG	1 cut(s)	123
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	2 cut(s)	322, 340
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	2 cut(s)	154, 260
MluCI	AATT	6 cut(s)	44, 75, 86, 214, 278, 357
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	3 cut(s)	198, 231, 312
MroI	TCCGGA	2 cut(s)	18, 134
MseI	TTAA	2 cut(s)	281, 303
MslI	CAYNNNNRTG	1 cut(s)	157
MspI	CCGG	4 cut(s)	19, 111, 135, 253
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	162
NlaIV	GGNNCC	2 cut(s)	139, 153
NspI	RCATGY	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	139, 153
PspPI	GGNCC	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	281, 303
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	154, 260
SetI	ASST	2 cut(s)	39, 107
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	157
Sse9I	AATT	6 cut(s)	44, 75, 86, 214, 278, 357
SsiI	CCGC	3 cut(s)	9, 98, 141
SspMI	CTAG	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	172, 228, 262
TaqI	TCGA	1 cut(s)	198
TasI	AATT	6 cut(s)	44, 75, 86, 214, 278, 357
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	281, 303
Tru9I	TTAA	2 cut(s)	281, 303
TspDTI	ATGAA	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	2 cut(s)	86, 214
XceI	RCATGY	1 cut(s)	162
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.