Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

59837028 .. 59858573

Gene Structure 21546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG386800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGGCCACAAGTGTATCAAATCAAGTGGAAGCAATGGCCGGTGTTGAACAACAAAATCATGCTGATCACCAAAATTTTGCTTTCAAAGTTCGATCTAAACTTGAAGCGGCTTTGAGGTTGAACTCAATTCATCACTATGTGACGAAAAGGCCGTGGCTTGCATCATTTGAAAGTATGAGTAGAAAAGCATTTGTTGATCCAGCACTGTTACACCAGTACTTGCCGAATGAGTTGCTCTTTGAGGTCTCTAACCCAGTTCACTTGTGGGATGTACTATCTGGTTACTCTCCACCCCCACCCATGAAGAGAAAAAAGAGGGTTCTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

110

Amino Acids

12.67

Weight (kDa)

9.35

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	76
AdeI	CACNNNGTG	1 cut(s)	142
AfaI	GTAC	2 cut(s)	221, 276
AgsI	TTSAA	5 cut(s)	50, 88, 107, 124, 173
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	3 cut(s)	6, 39, 152
ApoI	RAATTY	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	62
BaeI	ACNNNNGTAYC	1 cut(s)	33
BceAI	ACGGC	1 cut(s)	139
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BmcAI	AGTACT	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	217, 257
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	217, 257
BshFI	GGCC	3 cut(s)	8, 41, 154
BsiSI	CCGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	8, 41, 154
Bso31I	GGTCTC	1 cut(s)	253
Bsp143I	GATC	3 cut(s)	67, 95, 199
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	3 cut(s)	8, 41, 154
BspPI	GGATC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	217, 257
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	3 cut(s)	67, 95, 199
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	3 cut(s)	70, 98, 202
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	3 cut(s)	67, 95, 199
BsuRI	GGCC	3 cut(s)	8, 41, 154
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	220, 275
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	2 cut(s)	62, 304
CviJI	RGCY	5 cut(s)	8, 41, 113, 154, 160
CviKI_1	RGCY	5 cut(s)	8, 41, 113, 154, 160
CviQI	GTAC	2 cut(s)	220, 275
DpnI	GATC	3 cut(s)	69, 97, 201
DpnII	GATC	3 cut(s)	67, 95, 199
DraIII	CACNNNGTG	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	253
FaeI	CATG	2 cut(s)	65, 307
FaiI	YATR	4 cut(s)	63, 141, 179, 305
FatI	CATG	2 cut(s)	61, 303
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	8, 41, 154
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	2 cut(s)	65, 307
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	65, 307
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	67, 95, 199
LpnPI	CCDG	5 cut(s)	55, 216, 230, 267, 270
LweI	GCATC	1 cut(s)	173
MaeIII	GTNAC	3 cut(s)	142, 210, 284
MalI	GATC	3 cut(s)	69, 97, 201
MboI	GATC	3 cut(s)	67, 95, 199
MboII	GAAGA	1 cut(s)	319
MluCI	AATT	2 cut(s)	76, 129
MnlI	CCTC	3 cut(s)	111, 238, 312
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	1 cut(s)	42
NdeII	GATC	3 cut(s)	67, 95, 199
NlaIII	CATG	2 cut(s)	65, 307
NmuCI	GTSAC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	112
RsaI	GTAC	2 cut(s)	221, 276
RsaNI	GTAC	2 cut(s)	220, 275
RseI	CAYNNNNRTG	1 cut(s)	138
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	3 cut(s)	67, 95, 199
ScaI	AGTACT	1 cut(s)	221
SetI	ASST	2 cut(s)	122, 249
SfaNI	GCATC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	2 cut(s)	76, 129
SsiI	CCGC	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	76, 129
TatI	WGTACW	2 cut(s)	219, 274
TauI	GCSGC	1 cut(s)	113
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	122, 320
TspRI	CASTG	1 cut(s)	213
XapI	RAATTY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.