Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

29953395 .. 29956000

Gene Structure 2606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018454

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCGTTGATTCGTTCCGGACTCGTCCAGTTCAGCTCGCTCAATTTCACTCCAAAACCAAAACCCCAATCCCAATTCCCCCCAAATTTACAAAACCGCTAAGGTTTTCCGGTGGCCGTCCTAGTATGAGTTCCAGATTCGCGACCTGGGCACCCACATGGTACGACTCCATTTCCAGAGCTTCAATTCTTGTAATTTTGGTTGGAATAGTGCTCAGTTTCATGTCTTGGTCAATGGGTCGTTCTGCACCTAAGGACCTTGTTGCTAAGACTGCAATGTATGTGAGTGATGGGAAAGTTGTGGGTTTCAATGGGTTGGCTAAGCAAGCTCTTCACTTTGTGCATAGGGTCAATGTGGGAGGTCATAAAGAGAAGTCCCTAAAGGTACCTGGGCCTGTTGATCAACTATTCTCTGATTATGCAAAGAGATTTAATGAAATCAAGACCCCTCGTAAGCTATTGTGGAAGAAGAATCTTGGTACTGTCAAGTTGGAATTGCAATTTGAAGATAGAGAAATGCAGTTCATGGTTGCTCCTCTTCATGCAGCAATTATCCTGCAATTTCAAGATCAGAAAAGCTGGACCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCTAATAGATACACTTAATCGGAGGATCAATTTTTGGATAAGCAAGGGAATTCTTGCAGAATCACTTGGGGAAGATACTAATGACCATGTGTTTACACTAATGGAAGGGATGATTGGTTCTTGCCTCTGTTTTCTATTCTGCTTCGTCATTTTTTATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

259

Amino Acids

29.08

Weight (kDa)

9.8

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin_AB	PF26557	125 - 226	4.5e-12	Cullin alpha+beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	385
AccB1I	GGYRCC	2 cut(s)	151, 385
AccII	CGCG	1 cut(s)	143
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	647
AcoI	YGGCCR	2 cut(s)	3, 115
AcsI	RAATTY	2 cut(s)	86, 663
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	3 cut(s)	164, 387, 481
AgsI	TTSAA	4 cut(s)	186, 310, 506, 566
AjnI	CCWGG	2 cut(s)	146, 388
AjuI	GAANNNNNNNTTGG	2 cut(s)	711, 743
AloI	GAACNNNNNNTCC	2 cut(s)	715, 747
AluBI	AGCT	6 cut(s)	37, 182, 329, 457, 579, 602
AluI	AGCT	6 cut(s)	37, 182, 329, 457, 579, 602
Alw21I	GWGCWC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	647
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	3 cut(s)	3, 115, 392
ApeKI	GCWGC	3 cut(s)	545, 599, 602
ApoI	RAATTY	2 cut(s)	86, 663
Asp718I	GGTACC	1 cut(s)	385
AspS9I	GGNCC	3 cut(s)	256, 392, 582
AvaII	GGWCC	2 cut(s)	256, 582
AxyI	CCTNAGG	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	2 cut(s)	151, 385
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	557, 589, 611
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	2 cut(s)	148, 390
BclI	TGATCA	1 cut(s)	400
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	603
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	3 cut(s)	546, 600, 603
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	3 cut(s)	547, 601, 604
Bme1390I	CCNGG	2 cut(s)	148, 390
Bme18I	GGWCC	2 cut(s)	256, 582
BmgT120I	GGNCC	3 cut(s)	256, 392, 582
BmiI	GGNNCC	2 cut(s)	153, 387
BmrFI	CCNGG	2 cut(s)	148, 390
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	147, 389
BsaWI	WCCGGW	2 cut(s)	18, 110
Bse1I	ACTGG	1 cut(s)	29
Bse21I	CCTNAGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	148, 390
BseDI	CCNNGG	2 cut(s)	147, 389
BseGI	GGATG	1 cut(s)	729
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	525
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	3 cut(s)	557, 589, 611
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	3 cut(s)	5, 117, 394
BshNI	GGYRCC	2 cut(s)	151, 385
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	19, 111
BslFI	GGGAC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	3 cut(s)	5, 117, 394
Bsp1286I	GDGCHC	2 cut(s)	154, 216
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	4 cut(s)	400, 568, 592, 639
Bsp1720I	GCTNAGC	1 cut(s)	321
Bsp68I	TCGCGA	1 cut(s)	143
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	3 cut(s)	5, 117, 394
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	2 cut(s)	153, 387
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	1 cut(s)	647
BspQI	GCTCTTC	1 cut(s)	336
BspT107I	GGYRCC	2 cut(s)	151, 385
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	147, 389
BssMI	GATC	4 cut(s)	400, 568, 592, 639
Bst2UI	CCWGG	2 cut(s)	148, 390
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	2 cut(s)	336, 543
BstC8I	GCNNGC	2 cut(s)	39, 327
BstDEI	CTNAG	5 cut(s)	101, 215, 252, 267, 321
BstF5I	GGATG	1 cut(s)	729
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	4 cut(s)	403, 571, 595, 642
BstMBI	GATC	4 cut(s)	400, 568, 592, 639
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 272, 326
BstNI	CCWGG	2 cut(s)	148, 390
BstSCI	CCNGG	2 cut(s)	146, 388
BstSFI	CTRYAG	1 cut(s)	603
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	557, 589, 611
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	5, 117, 394
BtsCI	GGATG	1 cut(s)	729
BtuMI	TCGCGA	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	39, 327
Cfr13I	GGNCC	3 cut(s)	256, 392, 582
Csp6I	GTAC	3 cut(s)	163, 386, 480
CviAII	CATG	5 cut(s)	159, 223, 526, 542, 701
CviQI	GTAC	3 cut(s)	163, 386, 480
DdeI	CTNAG	5 cut(s)	101, 215, 252, 267, 321
DpnI	GATC	4 cut(s)	402, 570, 594, 641
DpnII	GATC	4 cut(s)	400, 568, 592, 639
DraIII	CACNNNGTG	1 cut(s)	340
EaeI	YGGCCR	2 cut(s)	3, 115
Eam1104I	CTCTTC	2 cut(s)	336, 543
EarI	CTCTTC	2 cut(s)	336, 543
Eco47I	GGWCC	2 cut(s)	256, 582
Eco81I	CCTNAGG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	663
EcoRII	CCWGG	2 cut(s)	146, 388
FaeI	CATG	5 cut(s)	162, 226, 529, 545, 704
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	5 cut(s)	158, 222, 525, 541, 700
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	3 cut(s)	546, 600, 603
FokI	GGATG	1 cut(s)	736
Fsp4HI	GCNGC	3 cut(s)	546, 600, 603
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	546, 600, 603
HaeIII	GGCC	3 cut(s)	5, 117, 394
HapII	CCGG	2 cut(s)	19, 111
Hin1II	CATG	5 cut(s)	162, 226, 529, 545, 704
HinfI	GANTC	6 cut(s)	11, 22, 138, 167, 472, 674
HpaII	CCGG	2 cut(s)	19, 111
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188I	TCNGA	3 cut(s)	415, 573, 636
Hpy188III	TCNNGA	6 cut(s)	19, 135, 142, 177, 442, 566
Hpy8I	GTNNAC	1 cut(s)	708
HpyAV	CCTTC	1 cut(s)	713
HpyCH4III	ACNGT	1 cut(s)	484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 272, 326
HpyF3I	CTNAG	5 cut(s)	101, 215, 252, 267, 321
Hsp92II	CATG	5 cut(s)	162, 226, 529, 545, 704
Kpn2I	TCCGGA	1 cut(s)	18
KpnI	GGTACC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	4 cut(s)	400, 568, 592, 639
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	3 cut(s)	557, 589, 611
MaeI	CTAG	1 cut(s)	123
MalI	GATC	4 cut(s)	402, 570, 594, 641
MboI	GATC	4 cut(s)	400, 568, 592, 639
MboII	GAAGA	6 cut(s)	323, 478, 481, 518, 530, 698
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	2 cut(s)	154, 216
MlyI	GAGTC	2 cut(s)	16, 161
MmeI	TCCRAC	2 cut(s)	184, 471
MnlI	CCTC	6 cut(s)	353, 459, 546, 595, 630, 749
MroI	TCCGGA	1 cut(s)	18
MseI	TTAA	2 cut(s)	432, 630
MslI	CAYNNNNRTG	1 cut(s)	157
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	2 cut(s)	19, 111
MspR9I	CCNGG	2 cut(s)	148, 390
MvaI	CCWGG	2 cut(s)	148, 390
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	3 cut(s)	149, 272, 326
NdeII	GATC	4 cut(s)	400, 568, 592, 639
NlaIII	CATG	5 cut(s)	162, 226, 529, 545, 704
NlaIV	GGNNCC	2 cut(s)	153, 387
NruI	TCGCGA	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	11, 138, 472, 674
PkrI	GCNGC	3 cut(s)	547, 601, 604
PleI	GAGTC	2 cut(s)	16, 161
PpsI	GAGTC	2 cut(s)	16, 161
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	146, 388
PspGI	CCWGG	2 cut(s)	146, 388
PspN4I	GGNNCC	2 cut(s)	153, 387
PspPI	GGNCC	3 cut(s)	256, 392, 582
PspPPI	RGGWCCY	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	602
RruI	TCGCGA	1 cut(s)	143
RsaI	GTAC	3 cut(s)	164, 387, 481
RsaNI	GTAC	3 cut(s)	163, 386, 480
RseI	CAYNNNNRTG	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	432, 630
SatI	GCNGC	3 cut(s)	546, 600, 603
Sau3AI	GATC	4 cut(s)	400, 568, 592, 639
Sau96I	GGNCC	3 cut(s)	256, 392, 582
SchI	GAGTC	2 cut(s)	16, 161
ScrFI	CCNGG	2 cut(s)	148, 390
SduI	GDGCHC	2 cut(s)	154, 216
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	2 cut(s)	256, 582
SmiMI	CAYNNNNRTG	1 cut(s)	157
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	146, 388
TaaI	ACNGT	1 cut(s)	484
TfiI	GAWTC	4 cut(s)	11, 138, 472, 674
Tru1I	TTAA	2 cut(s)	432, 630
Tru9I	TTAA	2 cut(s)	432, 630
TseI	GCWGC	3 cut(s)	545, 599, 602
TspDTI	ATGAA	4 cut(s)	211, 450, 514, 530
VpaK11BI	GGWCC	2 cut(s)	256, 582
XapI	RAATTY	2 cut(s)	86, 663
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.