Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

45829739 .. 45831965

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTCGCCGCTTCGTTCCGGACTCGTCCACTTCAGCTCGCTCAATTTCACTCCGAAACCAAAATCCCAATCCCAATTCCCCCTAAATTTACCAAACCGCTAAGGTCCAATGGTCGTTCTGCACCTAAGGACCTTGTTGCTAATACTGCAATGTATGTGAGTGATGGGAAAGTTGTGGGTTTCAACAGGTTGGCTAAGCAAGCTCTTCACATTGTGCATAGGGTCAATGTGGGAGGTTATTCGACAAGCGTATGCACTAGATATGGACTTGCTGTGGGTTCCAACCAATATGTTATCACTTGGGTAGCTTTGAAATTTGAAGATATGTTGGAATTGCAATTTGAAGATAGAGAAATGCAGTTCATGGTTGCTCTTCTTCATGCAGCAATTATAATGCAATTTCAAAATCAGAAAAGCTGGACCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATAATAGCTACTTTACTGTATTTGGTAAAAGTCCTCTATATTTCGATTCTCTTGGTTGGAATTTGAGTTCACGGTGGATTGCGAGGCAACTCTTTGACCGGAGCACCGTCCCCCGATATGTGTCAATTAACTGGTCTGTGTTTCCTTTTATGCTTAGTGATGTTAGAGGCAATAACCCGACTAGCCCCGTGTCTCGTATCAGATTACCCAAAATCAATCTTTACAAGGGTTTAGGGTTTATGCTGGTTTTCAATTTTGACGGGATGGTGGGCATGGAAAGGCTTGGGAGTCGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

252

Amino Acids

28.44

Weight (kDa)

10.08

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	2 cut(s)	9, 98
AcsI	RAATTY	3 cut(s)	86, 314, 520
AcuI	CTGAAG	1 cut(s)	17
AdeI	CACNNNGTG	1 cut(s)	214
AgsI	TTSAA	6 cut(s)	184, 313, 320, 344, 404, 712
AloI	GAACNNNNNNTCC	2 cut(s)	511, 543
AluBI	AGCT	6 cut(s)	37, 203, 308, 417, 440, 468
AluI	AGCT	6 cut(s)	37, 203, 308, 417, 440, 468
Alw21I	GWGCWC	1 cut(s)	566
Alw26I	GTCTC	1 cut(s)	657
Aor13HI	TCCGGA	1 cut(s)	18
ApeKI	GCWGC	3 cut(s)	383, 437, 440
ApoI	RAATTY	3 cut(s)	86, 314, 520
AspS9I	GGNCC	3 cut(s)	105, 130, 420
AvaII	GGWCC	3 cut(s)	105, 130, 420
AxyI	CCTNAGG	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	566
BbvI	GCAGC	3 cut(s)	395, 427, 449
BccI	CCATC	2 cut(s)	158, 718
BcoDI	GTCTC	1 cut(s)	657
BfaI	CTAG	2 cut(s)	258, 642
BfmI	CTRYAG	1 cut(s)	441
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	4 cut(s)	9, 384, 438, 441
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	4 cut(s)	10, 385, 439, 442
Bme18I	GGWCC	3 cut(s)	105, 130, 420
BmgT120I	GGNCC	3 cut(s)	105, 130, 420
BmiI	GGNNCC	2 cut(s)	280, 453
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	195
BsaWI	WCCGGW	2 cut(s)	18, 558
Bse1I	ACTGG	1 cut(s)	596
Bse21I	CCTNAGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	156
BseAI	TCCGGA	1 cut(s)	18
BseGI	GGATG	1 cut(s)	729
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	596
BseXI	GCAGC	3 cut(s)	395, 427, 449
BsgI	GTGCAG	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	566
BsiSI	CCGG	2 cut(s)	19, 559
BslFI	GGGAC	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	657
BsmFI	GGGAC	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	430
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	2 cut(s)	9, 98
BspEI	TCCGGA	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	280, 453
BspMAI	CTGCAG	1 cut(s)	445
BspQI	GCTCTTC	2 cut(s)	210, 378
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	596
BssMI	GATC	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	478, 534, 568
Bst6I	CTCTTC	2 cut(s)	210, 378
BstC8I	GCNNGC	2 cut(s)	39, 201
BstDEI	CTNAG	4 cut(s)	101, 126, 195, 614
BstF5I	GGATG	1 cut(s)	729
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 200
BstSFI	CTRYAG	1 cut(s)	441
BstV1I	GCAGC	3 cut(s)	395, 427, 449
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu36I	CCTNAGG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	729
Cac8I	GCNNGC	2 cut(s)	39, 201
Cfr13I	GGNCC	3 cut(s)	105, 130, 420
CviAII	CATG	3 cut(s)	364, 380, 733
CviJI	RGCY	9 cut(s)	37, 194, 203, 308, 417, 440, 468, 645, 742
CviKI_1	RGCY	9 cut(s)	37, 194, 203, 308, 417, 440, 468, 645, 742
DdeI	CTNAG	4 cut(s)	101, 126, 195, 614
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
DraIII	CACNNNGTG	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	210, 378
EarI	CTCTTC	2 cut(s)	210, 378
Eco47I	GGWCC	3 cut(s)	105, 130, 420
Eco57I	CTGAAG	1 cut(s)	17
Eco81I	CCTNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	130
FaeI	CATG	3 cut(s)	367, 383, 736
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	3 cut(s)	363, 379, 732
Fnu4HI	GCNGC	4 cut(s)	9, 384, 438, 441
FokI	GGATG	1 cut(s)	736
Fsp4HI	GCNGC	4 cut(s)	9, 384, 438, 441
FspBI	CTAG	2 cut(s)	258, 642
GluI	GCNGC	4 cut(s)	9, 384, 438, 441
HapII	CCGG	2 cut(s)	19, 559
Hin1II	CATG	3 cut(s)	367, 383, 736
HinfI	GANTC	3 cut(s)	22, 506, 748
HpaII	CCGG	2 cut(s)	19, 559
Hpy166II	GTNNAC	2 cut(s)	29, 530
Hpy188I	TCNGA	3 cut(s)	55, 411, 662
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	2 cut(s)	29, 530
HpyCH4III	ACNGT	3 cut(s)	478, 534, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 200
HpyF3I	CTNAG	4 cut(s)	101, 126, 195, 614
Hsp92II	CATG	3 cut(s)	367, 383, 736
Kpn2I	TCCGGA	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	430
LguI	GCTCTTC	2 cut(s)	210, 378
LmnI	GCTCC	1 cut(s)	561
LpnPI	CCDG	6 cut(s)	32, 172, 403, 572, 577, 689
Lsp1109I	GCAGC	3 cut(s)	395, 427, 449
MaeI	CTAG	2 cut(s)	258, 642
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	5 cut(s)	197, 332, 356, 365, 368
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	566
MlyI	GAGTC	2 cut(s)	16, 757
MmeI	TCCRAC	3 cut(s)	306, 309, 497
MnlI	CCTC	5 cut(s)	227, 433, 504, 537, 620
MroI	TCCGGA	1 cut(s)	18
MseI	TTAA	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	2 cut(s)	19, 559
MwoI	GCNNNNNNNGC	2 cut(s)	146, 200
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	3 cut(s)	367, 383, 736
NlaIV	GGNNCC	2 cut(s)	280, 453
PciSI	GCTCTTC	2 cut(s)	210, 378
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	4 cut(s)	10, 385, 439, 442
PleI	GAGTC	2 cut(s)	16, 756
PpsI	GAGTC	2 cut(s)	16, 756
PpuMI	RGGWCCY	1 cut(s)	130
PsiI	TTATAA	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	280, 453
PspPI	GGNCC	3 cut(s)	105, 130, 420
PspPPI	RGGWCCY	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	440
SapI	GCTCTTC	2 cut(s)	210, 378
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	4 cut(s)	9, 384, 438, 441
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	3 cut(s)	105, 130, 420
SchI	GAGTC	2 cut(s)	16, 757
SduI	GDGCHC	1 cut(s)	566
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	3 cut(s)	105, 130, 420
SsiI	CCGC	2 cut(s)	9, 98
SspMI	CTAG	2 cut(s)	258, 642
TaaI	ACNGT	3 cut(s)	478, 534, 568
TaqI	TCGA	2 cut(s)	242, 504
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TseI	GCWGC	3 cut(s)	383, 437, 440
TspDTI	ATGAA	3 cut(s)	352, 368, 744
VpaK11BI	GGWCC	3 cut(s)	105, 130, 420
XapI	RAATTY	3 cut(s)	86, 314, 520
XspI	CTAG	2 cut(s)	258, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.