Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

27750506 .. 27751054

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0198100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAGTTCCACTTTGTTCTTCAGTGGGTAAAAGGCCTCCTCCGAAACAATGTAACCCTGAAAAAAAGGCAAGCTCTACACCACTTACAAGTGCTCGCCTCCGGGTCCAAGCGTACAAAAGCAACCTTGATTATCAACAGGTTCGAGAAAGGTGGTGATGGTGGTGGACCGTCTGAATGTGATAACAAATTCCACTCGGATAACACGGCGGTCGTGGCATTGTCCACCGGGTGGTTCAACAATAGGAAGAGTTGTCCACACTACATTACCATACATGGTAATGGAAGGAGTGTGAAAGCCAAGGCTGTTGATGAGAATGACTCCACAATGGGTTGTGATCCTGTTCATGATTACCAGCCTCCATGCTCTCACAACATCGTTGATGCCTCTCCAGCTGTTTGGAAGGCCTTGGGAGTTAAGGAAAGCGACTGGGGTGAAATTCAGATATTCTGGTCTGTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

154

Amino Acids

17.07

Weight (kDa)

9.12

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KWL1	PF24300	38 - 152	1.1e-40	Kiwellin-1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	231
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	2 cut(s)	188, 438
AcuI	CTGAAG	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	238
AluBI	AGCT	2 cut(s)	74, 395
AluI	AGCT	2 cut(s)	74, 395
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	2 cut(s)	34, 405
ApoI	RAATTY	2 cut(s)	188, 438
AspS9I	GGNCC	2 cut(s)	105, 167
AsuC2I	CCSGG	2 cut(s)	103, 229
AsuHPI	GGTGA	2 cut(s)	167, 446
AvaII	GGWCC	2 cut(s)	105, 167
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	222
BcnI	CCSGG	2 cut(s)	103, 229
Bme1390I	CCNGG	2 cut(s)	103, 229
Bme18I	GGWCC	2 cut(s)	105, 167
BmgT120I	GGNCC	2 cut(s)	105, 167
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	103, 229
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	439
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	1 cut(s)	375
BpuMI	CCSGG	2 cut(s)	103, 229
BsaJI	CCNNGG	2 cut(s)	300, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	300, 408
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	36, 407
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	102, 228
BslI	CCNNNNNNNGG	1 cut(s)	231
BsnI	GGCC	2 cut(s)	36, 407
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	2 cut(s)	36, 407
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	300, 408
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	2 cut(s)	300, 408
Bst4CI	ACNGT	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	72, 96
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 392
BstSCI	CCNGG	2 cut(s)	101, 227
BstXI	CCANNNNNNTGG	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	36, 407
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	2 cut(s)	72, 96
CciI	TCATGA	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	105, 167
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	3 cut(s)	275, 347, 363
CviJI	RGCY	7 cut(s)	36, 74, 299, 305, 358, 395, 407
CviKI_1	RGCY	7 cut(s)	36, 74, 299, 305, 358, 395, 407
CviQI	GTAC	1 cut(s)	114
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
DraIII	CACNNNGTG	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	300, 408
Eco147I	AGGCCT	2 cut(s)	36, 407
Eco47I	GGWCC	2 cut(s)	105, 167
Eco57I	CTGAAG	1 cut(s)	5
EcoT14I	CCWWGG	2 cut(s)	300, 408
ErhI	CCWWGG	2 cut(s)	300, 408
FaeI	CATG	3 cut(s)	278, 350, 366
FaiI	YATR	4 cut(s)	272, 276, 348, 364
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	3 cut(s)	274, 346, 362
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	36, 407
HapII	CCGG	2 cut(s)	102, 228
Hin1II	CATG	3 cut(s)	278, 350, 366
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	2 cut(s)	102, 228
HphI	GGTGA	2 cut(s)	167, 446
Hpy166II	GTNNAC	3 cut(s)	167, 225, 257
Hpy188I	TCNGA	4 cut(s)	44, 175, 199, 444
Hpy188III	TCNNGA	2 cut(s)	145, 347
Hpy8I	GTNNAC	3 cut(s)	167, 225, 257
HpyAV	CCTTC	2 cut(s)	279, 397
HpyCH4III	ACNGT	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 392
Hsp92II	CATG	3 cut(s)	278, 350, 366
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	9 cut(s)	71, 115, 124, 241, 354, 368, 405, 415, 436
LweI	GCATC	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	2 cut(s)	11, 259
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	2 cut(s)	188, 438
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	5 cut(s)	47, 50, 109, 369, 397
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	2 cut(s)	102, 228
MspR9I	CCNGG	2 cut(s)	103, 229
MwoI	GCNNNNNNNGC	2 cut(s)	215, 392
NciI	CCSGG	2 cut(s)	103, 229
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	3 cut(s)	278, 350, 366
NlaIV	GGNNCC	1 cut(s)	106
PagI	TCATGA	1 cut(s)	346
PceI	AGGCCT	2 cut(s)	36, 407
PflMI	CCANNNNNTGG	1 cut(s)	231
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	2 cut(s)	105, 167
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	417
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	2 cut(s)	105, 167
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	103, 229
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	5 cut(s)	76, 128, 143, 154, 397
SfaNI	GCATC	1 cut(s)	373
SinI	GGWCC	2 cut(s)	105, 167
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	2 cut(s)	188, 438
SseBI	AGGCCT	2 cut(s)	36, 407
SsiI	CCGC	1 cut(s)	209
StuI	AGGCCT	2 cut(s)	36, 407
StyD4I	CCNGG	2 cut(s)	101, 227
StyI	CCWWGG	2 cut(s)	300, 408
TaaI	ACNGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	144
TasI	AATT	2 cut(s)	188, 438
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	17, 335
TspRI	CASTG	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	231
VpaK11BI	GGWCC	2 cut(s)	105, 167
XapI	RAATTY	2 cut(s)	188, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.