FvH4_5g29350

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
20335556 .. 20342227
6672 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29350.t1

Sequence Viewer

Length: 1857 bp
ATGCTTACGCATCTGCTATCTTTTTGTTTCTTAAGGACAAAGTTCATGACCTTGCTGGTGATGATTATCGGATTTCTGTTTTGGATTCTATTAAGGGATGGATACAGGTGTATTTTGCAGGCAGTGCCTCTTCAGTTCTTACATGCTCTACTTGCTTATCTCGGTGATTCTGTTAGTTATGAAAGTGCATCATCTGGTCTCAAGTCACCTTTGGCTAAATGCCCTACTTCATTCTATCCTGGAATTGATACTCCATCTGAAGGTCTTGTTAGGTGGCAGTTGCGACTAGAGTATTTCGCTTATGAAACATTGCAAGATCTGAGAATAGCAAAATTATTTGAGATTATTGTGGATTATCCTGACAGCTCTCCTGCTATTGAAGATTTGAAACAGTGTCTTGAGTACACTGGTCAACATTCTAAGCTTGTGGAGTCATTTATTTCGGCACTACAATATCGCTTGCTGACTGCAGGTGCCTCAACAAATGACATTTTGCATCAATATGTTTCAACGATCAAGGCACTCCGGACAATAGATCCAGCAGGTGTGTTCCTTGAAGCAGTGGGTGAGCCAATAAGGGACTATTTAAGGGGAAGGAAAGACACCATAAAGTGCATTGTGACCATGCTTACCGATGGGACTGGTGCAAATCCTAATGTATCTGGAAACACTGGGGATAGCCTTCTTGAAGAATTAAATAGAGACGAAGAAAGCCAAGAGAACATTGCTCCTGAAGATGACTTTCATATTGATGACAAACAAGCTTGGATAAATGCTTCACGCTGGGAGCCTGACCCTGTAGAAGCTGACCCCTTGAAAGGTAGTAGGAACCGAAGGAAGGTTGACATACTTGGAATGATTGTGGGCATAATTGGTTCACAAGACCAACTTGTTAATGAATACCGTGTTATGCTGGCTGAAAAGCTTCTTAACAAATCTGATTATGACATTGATTCAGAGATTCGTACTCTTGAACTCCTCAAGATACATTTTGGAGAGAACAGCATGCAGAAATGTGAGATTATGCTCAATGATCTGATTGGTTCTAAGAGGACCAACACCAATATTAAAGCAACCATAGCTCAGCCATCTCATACAGGTGGTGAGCTGGCCGAAAACAGGGTATCCATGGATACTCTTGACGCTACAATTATCTCTTCAAATTTTTGGCCTCCAATCCAGGAGGAGTCTCTAAATGTACCTGGTCCTGTTGACCAACTACTCTCTGATTATGCAAAGAGATTTAATGAAATCAAGACCCCTCGTAAGCTCTTGTGGAAGAAGAATCTTGGTACTGTCAAGTTGGAATTGCAATTTGAAGATAGAGAGATGCAGTTCATGGTTGCTCCTCTTCAAGCGGCAATTATAATGCATTTTCAAGATCAGAAAAGCTGGAGCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATATACTCAACCGGAGGATCAATTTTTGGACAAGCAAGGGAATTCTTGCAGAATCAATTGGGGAAGACTCTGATGACCATGTGTTTACACTCATGGAAGGGATGATTGACGCTGGCAAAAACACTGCTAATGATGGGAACTGTGAGGATCTTACAGCTGGTGATGAGGAAGGAGAGAGCTCTGTAGCCTCTGTAGAGGATCAACTGCGCAAGGAAATGACTGTGTATGAGAAATTTATTTTGGGAATGCTTACAAACTTTGGAAGCATGGCTTTGGATCGCATTCATAATACTCTCAAGATGTTCTGCATAGCAGATCCTACTTATGACAAAACCCTCCAACAGCTGCAAAGTTTCTTATCAGGTCTAGTTTCTGAAGAGAAGTTAGAACTAAGAGATGGCATGTACTTTTTAAAAAAATAG

Protein Analysis

619

Amino Acids

69.65

Weight (kDa)

4.86

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_ANAPC2 PF25773 91 - 199 5.6e-42 ANAPC2-like, TPR repeats
Cullin_AB PF26557 384 - 496 1.8e-15 Cullin alpha+beta domain
ANAPC2 PF08672 557 - 614 1.3e-23 Anaphase promoting complex (APC) subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1367
AarI CACCTGC 2 cut(s) 461, 533
Acc16I TGCGCA 1 cut(s) 1643
Acc36I ACCTGC 2 cut(s) 461, 533
AccB1I GGYRCC 1 cut(s) 473
AccIII TCCGGA 1 cut(s) 525
AciI CCGC 1 cut(s) 1358
AclWI GGATC 6 cut(s) 530, 1460, 1590, 1641, 1719, 1745
AcoI YGGCCR 1 cut(s) 1110
AcsI RAATTY 3 cut(s) 1162, 1476, 1667
AcuI CTGAAG 4 cut(s) 116, 279, 753, 1830
AfaI GTAC 5 cut(s) 404, 967, 1200, 1294, 1841
AfiI CCNNNNNNNGG 4 cut(s) 260, 818, 838, 1119
AflII CTTAAG 1 cut(s) 31
AjnI CCWGG 3 cut(s) 238, 1179, 1201
AjuI GAANNNNNNNTTGG 2 cut(s) 1658, 1690
Alw21I GWGCWC 2 cut(s) 1400, 1616
Alw26I GTCTC 3 cut(s) 203, 696, 1194
AlwI GGATC 6 cut(s) 530, 1460, 1590, 1641, 1719, 1745
Aor13HI TCCGGA 1 cut(s) 525
AoxI GGCC 2 cut(s) 1110, 1169
ApeKI GCWGC 3 cut(s) 1412, 1415, 1780
ApoI RAATTY 3 cut(s) 1162, 1476, 1667
Asp700I GAANNNNTTC 1 cut(s) 924
AspLEI GCGC 1 cut(s) 1644
AspS9I GGNCC 2 cut(s) 1053, 1205
AsuHPI GGTGA 6 cut(s) 70, 176, 198, 578, 1115, 1607
AvaII GGWCC 2 cut(s) 1053, 1205
BaeI ACNNNNGTAYC 2 cut(s) 94, 127
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 2 cut(s) 1400, 1616
BbsI GAAGAC 1 cut(s) 1506
Bbv12I GWGCWC 2 cut(s) 1400, 1616
BbvI GCAGC 3 cut(s) 1402, 1424, 1767
BccI CCATC 6 cut(s) 92, 262, 629, 1096, 1562, 1826
BciT130I CCWGG 3 cut(s) 240, 1181, 1203
BciVI GTATCC 3 cut(s) 95, 1126, 1135
BcoDI GTCTC 3 cut(s) 203, 696, 1194
BfaI CTAG 2 cut(s) 287, 1802
BfmI CTRYAG 5 cut(s) 468, 798, 1416, 1617, 1626
BfrI CTTAAG 1 cut(s) 31
BfuAI ACCTGC 2 cut(s) 461, 533
BfuI GTATCC 3 cut(s) 95, 1126, 1135
BglII AGATCT 2 cut(s) 316, 1405
BisI GCNGC 4 cut(s) 1359, 1413, 1416, 1781
BlpI GCTNAGC 1 cut(s) 1083
BlsI GCNGC 4 cut(s) 1360, 1414, 1417, 1782
Bme1390I CCNGG 3 cut(s) 240, 1181, 1203
Bme18I GGWCC 2 cut(s) 1053, 1205
BmgT120I GGNCC 2 cut(s) 1053, 1205
BmiI GGNNCC 4 cut(s) 475, 789, 830, 1428
BmrFI CCNGG 3 cut(s) 240, 1181, 1203
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 4 cut(s) 19, 197, 505, 1320
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 1 cut(s) 1506
BpmI CTGGAG 1 cut(s) 1414
Bpu1102I GCTNAGC 1 cut(s) 1083
BpuEI CTTGAG 4 cut(s) 185, 419, 965, 1715
BsaBI GATNNNNATC 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 1128
BsaWI WCCGGW 2 cut(s) 525, 1446
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 818, 838, 1119
Bse1I ACTGG 3 cut(s) 412, 646, 676
Bse3DI GCAATG 2 cut(s) 308, 723
Bse8I GATNNNNATC 1 cut(s) 65
BseAI TCCGGA 1 cut(s) 525
BseBI CCWGG 3 cut(s) 240, 1181, 1203
BseDI CCNNGG 1 cut(s) 1128
BseGI GGATG 2 cut(s) 103, 1542
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 4 cut(s) 260, 818, 838, 1119
BseMI GCAATG 2 cut(s) 308, 723
BseMII CTCAG 2 cut(s) 311, 1097
BseNI ACTGG 3 cut(s) 412, 646, 676
BseRI GAGGAG 3 cut(s) 968, 1199, 1338
BseXI GCAGC 3 cut(s) 1402, 1424, 1767
BseYI CCCAGC 1 cut(s) 783
BshFI GGCC 2 cut(s) 1112, 1171
BshNI GGYRCC 1 cut(s) 473
BsiHKAI GWGCWC 2 cut(s) 1400, 1616
BsiSI CCGG 2 cut(s) 526, 1447
BslFI GGGAC 2 cut(s) 593, 652
BslI CCNNNNNNNGG 4 cut(s) 260, 818, 838, 1119
BsmAI GTCTC 3 cut(s) 203, 696, 1194
BsmBI CGTCTC 1 cut(s) 696
BsmFI GGGAC 2 cut(s) 593, 652
BsmI GAATGC 2 cut(s) 1686, 1716
BsnI GGCC 2 cut(s) 1112, 1171
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 1400, 1616
Bsp13I TCCGGA 1 cut(s) 525
Bsp1720I GCTNAGC 1 cut(s) 1083
Bsp19I CCATGG 1 cut(s) 1128
BspACI CCGC 1 cut(s) 1358
BspANI GGCC 2 cut(s) 1112, 1171
BspCNI CTCAG 2 cut(s) 312, 1096
BspEI TCCGGA 1 cut(s) 525
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 4 cut(s) 475, 789, 830, 1428
BspMAI CTGCAG 2 cut(s) 472, 1420
BspMI ACCTGC 2 cut(s) 461, 533
BspPI GGATC 6 cut(s) 530, 1460, 1590, 1641, 1719, 1745
BspT107I GGYRCC 1 cut(s) 473
BspTI CTTAAG 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 308, 723
BsrI ACTGG 3 cut(s) 412, 646, 676
BssECI CCNNGG 1 cut(s) 1128
BssT1I CCWWGG 1 cut(s) 1128
Bst2UI CCWGG 3 cut(s) 240, 1181, 1203
Bst4CI ACNGT 5 cut(s) 393, 905, 1297, 1577, 1657
Bst6I CTCTTC 4 cut(s) 135, 1162, 1356, 1806
BstAFI CTTAAG 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 124
BstC8I GCNNGC 6 cut(s) 120, 461, 915, 1007, 1110, 1549
BstDEI CTNAG 5 cut(s) 320, 420, 1047, 1083, 1826
BstDSI CCRYGG 1 cut(s) 1128
BstF5I GGATG 2 cut(s) 103, 1542
BstHHI GCGC 1 cut(s) 1644
BstMAI GTCTC 3 cut(s) 203, 696, 1194
BstMWI GCNNNNNNNGC 3 cut(s) 124, 152, 1079
BstNI CCWGG 3 cut(s) 240, 1181, 1203
BstNSI RCATGY 3 cut(s) 146, 1009, 1840
BstSCI CCNGG 3 cut(s) 238, 1179, 1201
BstSFI CTRYAG 5 cut(s) 468, 798, 1416, 1617, 1626
BstV1I GCAGC 3 cut(s) 1402, 1424, 1767
BstV2I GAAGAC 1 cut(s) 1506
BstX2I RGATCY 5 cut(s) 316, 535, 1405, 1582, 1750
BstYI RGATCY 5 cut(s) 316, 535, 1405, 1582, 1750
BsuI GTATCC 3 cut(s) 95, 1126, 1135
BsuRI GGCC 2 cut(s) 1112, 1171
BtgI CCRYGG 1 cut(s) 1128
BtsCI GGATG 2 cut(s) 103, 1542
BtsI GCAGTG 3 cut(s) 129, 567, 1557
BtsIMutI CAGTG 6 cut(s) 129, 398, 405, 567, 669, 1557
BveI ACCTGC 2 cut(s) 461, 533
Cac8I GCNNGC 6 cut(s) 120, 461, 915, 1007, 1110, 1549
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 1644
Cfr13I GGNCC 2 cut(s) 1053, 1205
CseI GACGC 2 cut(s) 1151, 1553
CsiI ACCWGGT 1 cut(s) 1201
Csp6I GTAC 5 cut(s) 403, 966, 1199, 1293, 1840
CviQI GTAC 5 cut(s) 403, 966, 1199, 1293, 1840
DdeI CTNAG 5 cut(s) 320, 420, 1047, 1083, 1826
DraI TTTAAA 1 cut(s) 1848
EaeI YGGCCR 1 cut(s) 1110
Eam1104I CTCTTC 4 cut(s) 135, 1162, 1356, 1806
EarI CTCTTC 4 cut(s) 135, 1162, 1356, 1806
Ecl136II GAGCTC 2 cut(s) 1398, 1614
Eco130I CCWWGG 1 cut(s) 1128
Eco24I GRGCYC 2 cut(s) 1400, 1616
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 1053, 1205
Eco53kI GAGCTC 2 cut(s) 1398, 1614
Eco57I CTGAAG 4 cut(s) 116, 279, 753, 1830
EcoICRI GAGCTC 2 cut(s) 1398, 1614
EcoRI GAATTC 1 cut(s) 1476
EcoRII CCWGG 3 cut(s) 238, 1179, 1201
EcoT14I CCWWGG 1 cut(s) 1128
EcoT22I ATGCAT 1 cut(s) 1374
EcoT38I GRGCYC 2 cut(s) 1400, 1616
ErhI CCWWGG 1 cut(s) 1128
Esp3I CGTCTC 1 cut(s) 696
FalI AAGNNNNNCTT 4 cut(s) 873, 905, 1690, 1722
FaqI GGGAC 2 cut(s) 593, 652
Fnu4HI GCNGC 4 cut(s) 1359, 1413, 1416, 1781
FokI GGATG 2 cut(s) 110, 1549
FriOI GRGCYC 2 cut(s) 1400, 1616
Fsp4HI GCNGC 4 cut(s) 1359, 1413, 1416, 1781
FspBI CTAG 2 cut(s) 287, 1802
FspI TGCGCA 1 cut(s) 1643
GlaI GCGC 1 cut(s) 1643
GluI GCNGC 4 cut(s) 1359, 1413, 1416, 1781
GsaI CCCAGC 1 cut(s) 787
GsuI CTGGAG 1 cut(s) 1414
HaeIII GGCC 2 cut(s) 1112, 1171
HapII CCGG 2 cut(s) 526, 1447
HgaI GACGC 2 cut(s) 1151, 1553
HhaI GCGC 1 cut(s) 1644
Hin6I GCGC 1 cut(s) 1642
HinP1I GCGC 1 cut(s) 1642
HincII GTYRAC 3 cut(s) 413, 844, 1213
HindII GTYRAC 3 cut(s) 413, 844, 1213
HindIII AAGCTT 3 cut(s) 422, 762, 923
HinfI GANTC 9 cut(s) 85, 167, 431, 953, 961, 1187, 1285, 1487, 1502
HpaII CCGG 2 cut(s) 526, 1447
HphI GGTGA 6 cut(s) 70, 176, 198, 578, 1115, 1607
Hpy166II GTNNAC 6 cut(s) 405, 413, 844, 878, 1213, 1521
Hpy8I GTNNAC 6 cut(s) 405, 413, 844, 878, 1213, 1521
HpyAV CCTTC 7 cut(s) 254, 588, 692, 828, 832, 1526, 1598
HpyCH4III ACNGT 5 cut(s) 393, 905, 1297, 1577, 1657
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 152, 1079
HpyF3I CTNAG 5 cut(s) 320, 420, 1047, 1083, 1826
HspAI GCGC 1 cut(s) 1642
Kpn2I TCCGGA 1 cut(s) 525
LmnI GCTCC 5 cut(s) 733, 787, 1351, 1395, 1403
Lsp1109I GCAGC 3 cut(s) 1402, 1424, 1767
LweI GCATC 4 cut(s) 19, 197, 505, 1320
MabI ACCWGGT 1 cut(s) 1201
MaeI CTAG 2 cut(s) 287, 1802
MaeIII GTNAC 2 cut(s) 204, 619
MfeI CAATTG 1 cut(s) 1491
MflI RGATCY 5 cut(s) 316, 535, 1405, 1582, 1750
MhlI GDGCHC 2 cut(s) 1400, 1616
MlyI GAGTC 3 cut(s) 440, 1196, 1496
MmeI TCCRAC 2 cut(s) 1284, 1798
Mph1103I ATGCAT 1 cut(s) 1374
MroI TCCGGA 1 cut(s) 525
MroXI GAANNNNTTC 1 cut(s) 924
MseI TTAA 9 cut(s) 32, 92, 587, 695, 894, 930, 1068, 1245, 1847
MslI CAYNNNNRTG 3 cut(s) 501, 750, 1098
MspA1I CMGCKG 3 cut(s) 1415, 1592, 1780
MspCI CTTAAG 1 cut(s) 31
MspI CCGG 2 cut(s) 526, 1447
MspR9I CCNGG 3 cut(s) 240, 1181, 1203
MunI CAATTG 1 cut(s) 1491
Mva1269I GAATGC 2 cut(s) 1686, 1716
MvaI CCWGG 3 cut(s) 240, 1181, 1203
MwoI GCNNNNNNNGC 3 cut(s) 124, 152, 1079
NcoI CCATGG 1 cut(s) 1128
NlaIV GGNNCC 4 cut(s) 475, 789, 830, 1428
NmuCI GTSAC 2 cut(s) 204, 619
NsbI TGCGCA 1 cut(s) 1643
NsiI ATGCAT 1 cut(s) 1374
NspI RCATGY 3 cut(s) 146, 1009, 1840
PaeI GCATGC 1 cut(s) 1009
PagI TCATGA 1 cut(s) 45
PaqCI CACCTGC 2 cut(s) 461, 533
PctI GAATGC 2 cut(s) 1686, 1716
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 6 cut(s) 85, 167, 953, 961, 1285, 1487
PfoI TCCNGGA 2 cut(s) 238, 1179
PkrI GCNGC 4 cut(s) 1360, 1414, 1417, 1782
PleI GAGTC 3 cut(s) 439, 1195, 1496
PpsI GAGTC 3 cut(s) 439, 1195, 1496
PsiI TTATAA 1 cut(s) 1367
Psp124BI GAGCTC 2 cut(s) 1400, 1616
Psp6I CCWGG 3 cut(s) 238, 1179, 1201
PspFI CCCAGC 1 cut(s) 783
PspGI CCWGG 3 cut(s) 238, 1179, 1201
PspN4I GGNNCC 4 cut(s) 475, 789, 830, 1428
PspPI GGNCC 2 cut(s) 1053, 1205
PstI CTGCAG 2 cut(s) 472, 1420
PsuI RGATCY 5 cut(s) 316, 535, 1405, 1582, 1750
PvuII CAGCTG 3 cut(s) 1415, 1592, 1780
RsaI GTAC 5 cut(s) 404, 967, 1200, 1294, 1841
RsaNI GTAC 5 cut(s) 403, 966, 1199, 1293, 1840
RseI CAYNNNNRTG 3 cut(s) 501, 750, 1098
SacI GAGCTC 2 cut(s) 1400, 1616
SaqAI TTAA 9 cut(s) 32, 92, 587, 695, 894, 930, 1068, 1245, 1847
SatI GCNGC 4 cut(s) 1359, 1413, 1416, 1781
Sau96I GGNCC 2 cut(s) 1053, 1205
SchI GAGTC 3 cut(s) 440, 1196, 1496
ScrFI CCNGG 3 cut(s) 240, 1181, 1203
SduI GDGCHC 2 cut(s) 1400, 1616
SexAI ACCWGGT 1 cut(s) 1201
SfaNI GCATC 4 cut(s) 19, 197, 505, 1320
SfcI CTRYAG 5 cut(s) 468, 798, 1416, 1617, 1626
SinI GGWCC 2 cut(s) 1053, 1205
SmiMI CAYNNNNRTG 3 cut(s) 501, 750, 1098
SmlI CTYRAG 5 cut(s) 31, 200, 398, 980, 1730
SmoI CTYRAG 5 cut(s) 31, 200, 398, 980, 1730
SphI GCATGC 1 cut(s) 1009
SsiI CCGC 1 cut(s) 1358
SspI AATATT 1 cut(s) 1066
SspMI CTAG 2 cut(s) 287, 1802
SstI GAGCTC 2 cut(s) 1400, 1616
StyD4I CCNGG 3 cut(s) 238, 1179, 1201
StyI CCWWGG 1 cut(s) 1128
TaaI ACNGT 5 cut(s) 393, 905, 1297, 1577, 1657
TatI WGTACW 2 cut(s) 402, 1839
TauI GCSGC 1 cut(s) 1361
TfiI GAWTC 6 cut(s) 85, 167, 953, 961, 1285, 1487
Tru1I TTAA 9 cut(s) 32, 92, 587, 695, 894, 930, 1068, 1245, 1847
Tru9I TTAA 9 cut(s) 32, 92, 587, 695, 894, 930, 1068, 1245, 1847
TscAI CASTG 6 cut(s) 129, 398, 412, 567, 676, 1564
TseFI GTSAC 2 cut(s) 204, 619
TseI GCWGC 3 cut(s) 1412, 1415, 1780
Tsp45I GTSAC 2 cut(s) 204, 619
TspDTI ATGAA 9 cut(s) 34, 195, 219, 318, 734, 912, 1263, 1327, 1709
TspRI CASTG 6 cut(s) 129, 398, 412, 567, 676, 1564
Vha464I CTTAAG 1 cut(s) 31
VpaK11BI GGWCC 2 cut(s) 1053, 1205
XapI RAATTY 3 cut(s) 1162, 1476, 1667
XceI RCATGY 3 cut(s) 146, 1009, 1840
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 2 cut(s) 287, 1802
Zsp2I ATGCAT 1 cut(s) 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.