Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

18320408 .. 18326167

Gene Structure 5760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG205400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGGTGGACTATTTCGGTATGAGCTTGAGGAAGTATGGTTGGGCTTTAGGCTAAGCAGTCTCATTGATTCGAAGTTTGACATATCTTCTTGGATTCCTGAGGCTCAAGAGAGATTTAATGAAATCAAGACCCCTCGTAAGCTATTGTGGAAGAAGAATCTTGGTACTGTCAAGTTTATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

61

Amino Acids

7.28

Weight (kDa)

9.22

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	166
AluBI	AGCT	2 cut(s)	25, 142
AluI	AGCT	2 cut(s)	25, 142
Alw26I	GTCTC	1 cut(s)	65
AsuII	TTCGAA	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	65
BlpI	GCTNAGC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	47, 90
Bse21I	CCTNAGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1720I	GCTNAGC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	91
BspT104I	TTCGAA	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	169
BstBI	TTCGAA	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	53, 99
BstMAI	GTCTC	1 cut(s)	65
Bsu36I	CCTNAGG	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	165
CviJI	RGCY	5 cut(s)	25, 45, 52, 104, 142
CviKI_1	RGCY	5 cut(s)	25, 45, 52, 104, 142
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	53, 99
Eco81I	CCTNAGG	1 cut(s)	99
FaiI	YATR	3 cut(s)	21, 37, 83
HinfI	GANTC	3 cut(s)	68, 94, 157
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188III	TCNNGA	3 cut(s)	98, 107, 127
Hpy8I	GTNNAC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	169
HpyF3I	CTNAG	2 cut(s)	53, 99
LpnPI	CCDG	1 cut(s)	111
MboII	GAAGA	3 cut(s)	78, 163, 166
MnlI	CCTC	3 cut(s)	22, 94, 144
MseI	TTAA	2 cut(s)	117, 180
NspV	TTCGAA	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	68, 94, 157
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	117, 180
SetI	ASST	2 cut(s)	27, 144
SfuI	TTCGAA	1 cut(s)	71
SgeI	CNNG	7 cut(s)	38, 102, 110, 119, 139, 147, 173
SmlI	CTYRAG	2 cut(s)	26, 105
SmoI	CTYRAG	2 cut(s)	26, 105
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	68, 94, 157
Tru1I	TTAA	2 cut(s)	117, 180
Tru9I	TTAA	2 cut(s)	117, 180
TspDTI	ATGAA	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.