Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

24885876 .. 24888213

Gene Structure 2338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAAGTCAAATTCTGGCGCCATTTCCAGGGCACACGACGACGACGACGACGTTTCGATCGGAGAGCCAGTTTTCTACAACGCCATCTCACTGGAAAAGCAGTAGCAGGACAAGCGCTGGTTCATGCTTTACAGACTTATTATGGCCATGACTCCGATGACGTCATATCAATTGTGATTGTTATCCTTTTTGATGAAGATGATGGGGATGATATGGAGTTGGATGAGAAATGTAGAGTGTCATACAGGAGTCGACAAATGGAGATTGATGAATGTTATCCCCAAGGGAGGTTCTTTGAGGAGTCTTGGATTCACATCTATGACTCAAGGGTTCATGACCTTGCTGGTGATGATTATCGGATTTCTGTTTTGGAGTCTATTAAGGGGTGGATACAGATTGAAGCTCTCATGGTTGCCTCTGTTTCCCTATTGAAAGGAATTCTTGCAGAATCACTGGGGGAAGATTCTGATGACCATGTGTTTACACTCATGGAAGGGATGATTGACGCTGGCAAAAACACTGCTAATGATGGGAACTGTGAGGATCTTATAGTTGGTGATGAGGAAGGAGAGAGCTATGTAGCCTCTGTAGAGGATCAACTGCGCAAGGAAATGACTGTGTATGAGGGTTACTATTCCGACCGCGTCGGTGGTATCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

220

Amino Acids

25.29

Weight (kDa)

4.66

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
Acc16I	TGCGCA	1 cut(s)	605
AccB1I	GGYRCC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	253
AccII	CGCG	1 cut(s)	645
AciI	CCGC	1 cut(s)	643
AclWI	GGATC	2 cut(s)	552, 603
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	11, 438
AcyI	GRCGYC	2 cut(s)	19, 162
AfeI	AGCGCT	1 cut(s)	117
AfiI	CCNNNNNNNGG	2 cut(s)	28, 288
AgsI	TTSAA	2 cut(s)	401, 433
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	2 cut(s)	404, 576
AluI	AGCT	2 cut(s)	404, 576
AlwI	GGATC	2 cut(s)	552, 603
Aor51HI	AGCGCT	1 cut(s)	117
AoxI	GGCC	1 cut(s)	145
ApoI	RAATTY	2 cut(s)	11, 438
AspLEI	GCGC	3 cut(s)	21, 118, 606
AsuHPI	GGTGA	2 cut(s)	359, 569
BaeGI	GKGCMC	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	18
BccI	CCATC	3 cut(s)	93, 197, 524
BciT130I	CCWGG	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	2 cut(s)	22, 119
BfuI	GTATCC	1 cut(s)	384
Bme1390I	CCNGG	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	464
BmuI	ACTGGG	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	310
BsaBI	GATNNNNATC	3 cut(s)	182, 314, 354
BsaHI	GRCGYC	2 cut(s)	19, 162
BsaJI	CCNNGG	2 cut(s)	28, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 288
Bse1I	ACTGG	3 cut(s)	69, 97, 459
Bse8I	GATNNNNATC	3 cut(s)	182, 314, 354
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	28, 283
BseGI	GGATG	3 cut(s)	214, 229, 504
BseJI	GATNNNNATC	3 cut(s)	182, 314, 354
BseLI	CCNNNNNNNGG	2 cut(s)	28, 288
BseNI	ACTGG	3 cut(s)	69, 97, 459
BseRI	GAGGAG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	645
Bsh1285I	CGRYCG	2 cut(s)	61, 643
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	18
BsiEI	CGRYCG	2 cut(s)	61, 643
BslI	CCNNNNNNNGG	2 cut(s)	28, 288
BsnI	GGCC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	58, 544, 595
BspACI	CCGC	1 cut(s)	643
BspANI	GGCC	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	645
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	20
BspPI	GGATC	2 cut(s)	552, 603
BspT107I	GGYRCC	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	69, 97, 459
BssECI	CCNNGG	2 cut(s)	28, 283
BssMI	GATC	3 cut(s)	58, 544, 595
BssNI	GRCGYC	2 cut(s)	19, 162
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	539, 619
BstACI	GRCGYC	2 cut(s)	19, 162
BstC8I	GCNNGC	1 cut(s)	511
BstF5I	GGATG	3 cut(s)	214, 229, 504
BstFNI	CGCG	1 cut(s)	645
BstH2I	RGCGCY	2 cut(s)	22, 119
BstHHI	GCGC	3 cut(s)	21, 118, 606
BstKTI	GATC	3 cut(s)	61, 547, 598
BstMBI	GATC	3 cut(s)	58, 544, 595
BstMCI	CGRYCG	2 cut(s)	61, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	544
BstXI	CCANNNNNNTGG	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	214, 229, 504
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	90, 452, 519
Cac8I	GCNNGC	1 cut(s)	511
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	3 cut(s)	21, 118, 606
CseI	GACGC	2 cut(s)	515, 634
CviAII	CATG	6 cut(s)	125, 149, 335, 409, 476, 490
CviJI	RGCY	5 cut(s)	68, 147, 404, 576, 584
CviKI_1	RGCY	5 cut(s)	68, 147, 404, 576, 584
DinI	GGCGCC	1 cut(s)	20
DpnI	GATC	3 cut(s)	60, 546, 597
DpnII	GATC	3 cut(s)	58, 544, 595
EaeI	YGGCCR	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	283
EgeI	GGCGCC	1 cut(s)	20
EheI	GGCGCC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	6 cut(s)	128, 152, 338, 412, 479, 493
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	6 cut(s)	124, 148, 334, 408, 475, 489
FblI	GTMKAC	1 cut(s)	253
FokI	GGATG	3 cut(s)	221, 236, 511
FspI	TGCGCA	1 cut(s)	605
GlaI	GCGC	3 cut(s)	20, 117, 605
HaeII	RGCGCY	2 cut(s)	22, 119
HaeIII	GGCC	1 cut(s)	147
HgaI	GACGC	2 cut(s)	515, 634
HhaI	GCGC	3 cut(s)	21, 118, 606
Hin1I	GRCGYC	2 cut(s)	19, 162
Hin1II	CATG	6 cut(s)	128, 152, 338, 412, 479, 493
Hin6I	GCGC	3 cut(s)	19, 116, 604
HinP1I	GCGC	3 cut(s)	19, 116, 604
HincII	GTYRAC	1 cut(s)	254
HindII	GTYRAC	1 cut(s)	254
HinfI	GANTC	8 cut(s)	152, 250, 302, 310, 323, 374, 449, 464
HphI	GGTGA	2 cut(s)	359, 569
Hpy166II	GTNNAC	2 cut(s)	254, 483
Hpy188I	TCNGA	5 cut(s)	63, 157, 360, 469, 640
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	2 cut(s)	254, 483
Hpy99I	CGWCG	6 cut(s)	42, 45, 48, 51, 54, 650
HpyAV	CCTTC	2 cut(s)	488, 560
HpyCH4III	ACNGT	2 cut(s)	539, 619
HpyCH4IV	ACGT	2 cut(s)	52, 162
HpyCH4V	TGCA	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpySE526I	ACGT	2 cut(s)	52, 162
Hsp92I	GRCGYC	2 cut(s)	19, 162
Hsp92II	CATG	6 cut(s)	128, 152, 338, 412, 479, 493
HspAI	GCGC	3 cut(s)	19, 116, 604
KasI	GGCGCC	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	58, 544, 595
MaeII	ACGT	2 cut(s)	52, 162
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	3 cut(s)	60, 546, 597
MboI	GATC	3 cut(s)	58, 544, 595
MboII	GAAGA	2 cut(s)	209, 473
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	35
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	3 cut(s)	11, 171, 438
MluNI	TGGCCA	1 cut(s)	147
Mly113I	GGCGCC	1 cut(s)	19
MlyI	GAGTC	5 cut(s)	146, 259, 311, 317, 383
MmeI	TCCRAC	2 cut(s)	201, 663
MnlI	CCTC	8 cut(s)	282, 292, 427, 535, 556, 586, 595, 619
Mox20I	TGGCCA	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	1 cut(s)	113
NarI	GGCGCC	1 cut(s)	19
NdeII	GATC	3 cut(s)	58, 544, 595
NlaIII	CATG	6 cut(s)	128, 152, 338, 412, 479, 493
NlaIV	GGNNCC	1 cut(s)	20
NsbI	TGCGCA	1 cut(s)	605
PagI	TCATGA	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	4 cut(s)	43, 46, 49, 654
PfeI	GAWTC	3 cut(s)	310, 449, 464
PflFI	GACNNNGTC	1 cut(s)	644
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	5 cut(s)	146, 258, 310, 317, 382
PluTI	GGCGCC	1 cut(s)	22
PpsI	GAGTC	5 cut(s)	146, 258, 310, 317, 382
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	544
PsyI	GACNNNGTC	1 cut(s)	644
PvuI	CGATCG	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	318
SalI	GTCGAC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	381
Sau3AI	GATC	3 cut(s)	58, 544, 595
SchI	GAGTC	5 cut(s)	146, 259, 311, 317, 383
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	6 cut(s)	55, 165, 293, 342, 406, 578
SfcI	CTRYAG	1 cut(s)	588
SfoI	GGCGCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	3 cut(s)	11, 171, 438
SsiI	CCGC	1 cut(s)	643
SspDI	GGCGCC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	539, 619
TaiI	ACGT	2 cut(s)	55, 165
TaqI	TCGA	3 cut(s)	57, 253, 657
TasI	AATT	3 cut(s)	11, 171, 438
TfiI	GAWTC	3 cut(s)	310, 449, 464
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	3 cut(s)	97, 459, 526
TspDTI	ATGAA	4 cut(s)	113, 210, 285, 323
TspRI	CASTG	3 cut(s)	97, 459, 526
Tth111I	GACNNNGTC	1 cut(s)	644
XapI	RAATTY	2 cut(s)	11, 438
XmiI	GTMKAC	1 cut(s)	253
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.